BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63840.1 Length=1111 Score E Sequences producing significant alignments: (Bits) Value Ahg474972 jgi|Araly1|474972|fgenesh2_kg.2__102__AT1G63840.1 800 0.0 Ahg947578 jgi|Araly1|947578|scaffold_703807.1 206 4e-52 > Ahg474972 jgi|Araly1|474972|fgenesh2_kg.2__102__AT1G63840.1 Length=952 Score = 800 bits (433), Expect = 0.0 Identities = 668/773 (86%), Gaps = 50/773 (6%) Strand=Plus/Plus Query 77 AGAAACATCATCA-C-CACATTCCTGGCTA-ATATCCTTCATCTAGAACAATTATTAACG 133 ||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||| | Sbjct 1 AGAAACATCATCACCACACATTCCTGGCTATATATCCTTCATCTAGAACAATAATTAAAG 60 Query 134 AATCAAAATACCAAAAAACAAAGCACCTCATTGACTATTAAATTAGTA-CTAATACATTA 192 | ||||||| ||||| | ||| || | || | | |||| | | | || || | | Sbjct 61 ACTCAAAATGCCAAAGGA-AAA-CA-CGCA---A--A-TAAA-T-GCACCTCATTGACT- 108 Query 193 ATTAAGTTA-TTATTCCTATATATAAATCTCACCCATT-CTCCACCT-TATCATCACAAT 249 ||||| ||| | || | | || || || | | ||| | || | ||| || | ||| Sbjct 109 ATTAAATTAGTAATGCAT-TA-ATTAA-GT-A---ATTAAT-CA--TATAT-AT-A-AAT 155 Query 250 CCAAAActctctctc-tctctctc-tctctgtctcttgtcttatcattta--tctctctA 305 || | || |||| | ||| | || || | ||| | |||||||||||| |||||||| Sbjct 156 CCCACCCT-TCTC-CATCT-TATCATCACAGTC-CAAATCTTATCATTTATCTCTCTCTA 211 Query 306 ACGGCGAGGCAATGGGTTTTCCGGTGGGATATTCTGAGCTACTTCTCCCAAAAATCTT-T 364 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 212 ACGGCGAGGCAATGGGTTTTCCGGTGGGATATTCCGAGCTCCTTCTCCCAAAAATCTTCC 271 Query 365 TTCTACTTGTTATCTTTCTTAGGTTTGATACGTAAACTCATCTCCACAATGTTCAAGATC 424 || |||||| | ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 272 TT-TACTTGCTCTCTTTCTTAGGTTTGATACGTAAACTCATCTCCACAATGTTCAAGGTC 330 Query 425 ATTGGTCTACCAGATTTCTTAGAACCTGAACCGGTTTCAACCTCATGGCCCGACCCACCA 484 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 ATTGGTCTACCTGATTTCTTAGAACCTGAACCGGTTTCAACCTCATGGCCCGACCCACCA 390 Query 485 CCCACGTTGACCAAACCTGACTCAGCAGCAATACTAGCCGGAGAGATGTTACCGGTTGTT 544 ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 391 CCCACGTTGACCAAACCAGAGTCAGCAGCGATACTAGCCGGAGAGATGTTACCGGTTGTT 450 Query 545 CGATTCTCGGATATAAACCGACCGGAATCCGAGTGTTGCGCAGTGTGTCTCTACGATTTC 604 ||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct 451 AGATTCTCGGATCTAAACCGACCCGAATCCGAATGTTGTGCAGTGTGTCTCTACGATTTC 510 Query 605 GAGAACGACGACGAGATCCGACGGCTGACGAATTGT-CGACATATATTTCATCGGGGATG 663 ||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||| Sbjct 511 GAGAAAGACGACGAGATCCGACGGCTGACGAATTGTACT-CATATATTCCATCGGGGATG 569 Query 664 TTTGGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTCGTACACAGTT 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 570 TTTGGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTCGTACGCAGTT 629 Query 724 TATACCTGATCATCTTCAACTGGAGTTTAATCAAAGGCTCTGGTCTCAATCTTCTGCTGT 783 ||||||||||||||| |||||||||||||||||||| || |||||| ||||||||| | Sbjct 630 TATACCTGATCATCTGCAACTGGAGTTTAATCAAAGACTTTGGTCTGAATCTTCTGGAG- 688 Query 784 TTCTTCTCAACTTCTTGATGAATCATCATCT--T-AGGACGTATTAAATCTTT 833 ||||||||||||| ||||||||||||||| | ||||| |||||||||||| Sbjct 689 --CTTCTCAACTTCTAGATGAATCATCATCTAATTAGGACATATTAAATCTTT 739 > Ahg947578 jgi|Araly1|947578|scaffold_703807.1 Length=572 Score = 206 bits (111), Expect = 4e-52 Identities = 192/229 (84%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 518 CTAGCCGGAGAGATGTTACCGGTTGTTC-GATTCTCGGATATAAACCGA-CCGGA----- 570 ||||| ||||| || ||||| ||| || |||||||||| |||||||| ||||| Sbjct 259 CTAGCAGGAGAAATCTTACCCGTT-ATCAGATTCTCGGAGCTAAACCGACCCGGATTCGG 317 Query 571 ATCC-G---AG--TGTTGCGCAGTGTGTCTCTACGATTTCGAGAACGACGACGAGATCCG 624 |||| | || || ||||| ||||| ||| |||| ||||||||||| ||||||||||| Sbjct 318 ATCCGGATCAGATTGCTGCGCGGTGTGCCTCCACGAGTTCGAGAACGAAGACGAGATCCG 377 Query 625 ACGGCTGACGAATTGTCGACATATATTTCATCGGGGATGTTTGGACCGTTGGATGATGGG 684 ||||||||||||||| | ||| |||||||||||| | ||||||||||||||||||||||| Sbjct 378 ACGGCTGACGAATTGCCAACACATATTTCATCGGAGCTGTTTGGACCGTTGGATGATGGG 437 Query 685 TTATAATCAGATGACGTGTCCACTTTGTCGTACACAGTTTATACCTGAT 733 |||||||||||||||||||||||||||| | || | |||||| |||||| Sbjct 438 TTATAATCAGATGACGTGTCCACTTTGTAGGACGCCGTTTATTCCTGAT 486 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41401487862 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5