BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63940.2
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474964 jgi|Araly1|474964|fgenesh2_kg.2__94__AT1G63940.4 2804 0.0
> Ahg474964 jgi|Araly1|474964|fgenesh2_kg.2__94__AT1G63940.4
Length=1852
Score = 2804 bits (1518), Expect = 0.0
Identities = 1694/1776 (95%), Gaps = 23/1776 (1%)
Strand=Plus/Plus
Query 124 CAGTTCGTAGAGTCATGGCGTTAGCATCAACCACGTTGCCGACGAAGTCCGGATTATCTC 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 96 CAGTTCGTAGAGTCATGGCGTTAGCATCAACCACGTTGCCGACGAAGTCCGGATTGTCTC 155
Query 184 TTTGGTGTCCGTCTTCTCCGTCTCTCGCTCGCCGATTTCCCGCTCGTTTTTCTCCGATCG 243
|||||||||| |||||||||||||||||||| || |||| |||||| |||||||||||||
Sbjct 156 TTTGGTGTCCATCTTCTCCGTCTCTCGCTCGTCGTTTTCGCGCTCGGTTTTCTCCGATCG 215
Query 244 GTTCTAGAATCGCTTCCAGAAGCCTCGTCACTGCTTCGTTCGCTAACGAGAATCGCGAGT 303
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 216 GTTCTAGAATCGCTTCCAGATGCCTCGTCACTGCTTCTTTCGCTAACGAGAATCGCGAGT 275
Query 304 TTGTGATTGTTGGTGGAGGAAATGCTGCTGGTTATGCTGCTAGAACTTTTGTGGAAAATG 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 276 TTGTGATTGTTGGTGGAGGAAATGCTGCTGGTTATGCTGCTAGAACTTTTGTAGAGAACG 335
Query 364 GAATGGCTGATGGTCGGCTATGCATTGTGACCAAAGAGGCTTACGCACCTTATGAGAGAC 423
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 336 GAATGGCTGATGGTCGGCTTTGCATTGTGACCAAAGAGGCTTATGCACCTTATGAGAGAC 395
Query 424 CGGCTTTGACAAAAGCTTACTTGTTCCCACCAGAGAAGAAGCCAGCTCGTTTACCAGGAT 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 396 CGGCTTTGACAAAAGCTTACTTGTTCCCACCAGAGAAGAAGCCAGCTCGTTTACCAGGGT 455
Query 484 TTCATACTTGCGTTGGAGGTGGTGGAGAAAGGCAAACACCAGATTGGTATAAGGAGAAAG 543
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 456 TTCATACTTGTGTTGGAGGTGGTGGAGAAAGGCAGACACCAGACTGGTATAAGGAGAAAG 515
Query 544 GAATTGAGGTAATATATGAAGATCCAGTGGCTGGAGCTGATTTTGAAAAGCAAACACTCA 603
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 516 GAATTGAGGTAATATATGAAGATCCAGTGACTGGAGCTAATTTTGAAAAGCAAACCCTCA 575
Query 604 CCACAGACGCAGGGAAGCAGTTAAAATATGGATCTCTAATTATCGCTACAGGGTGTACAG 663
| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 576 CAACAGACACAGGGAAGCAGTTAAAATATGGATCCCTAATTATCGCTACAGGGTGTACAG 635
Query 664 CCTCAAGGTTCCCAGATAAAATCGGTGGGCACTTGCCAGGGGTTCACTATATTCGGGAGG 723
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 636 CCTCAAGGTTCCCAGATAAAATTGGAGGGAACTTGCCAGGGGTTCACTATATTCGGGAGG 695
Query 724 TTGCAGATGCTGATTCACTGATAGCATCTCTGGGAAAGGCAAAGAAAATTGTCATTGTTG 783
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 696 TTGCAGATGCTGATTCACTGATAGCATCTCTGGGAAAGGCAAAGAAAGTTGTCATTGTGG 755
Query 784 GTGGTGGCTACATCGGCATGGAGGTTGCTGCTGCAGCTGTTGCGTGGAATCTAGATACAA 843
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 756 GTGGTGGCTACATCGGCATGGAGGTTGCTGCGGCAGCTGTTGCGTGGAATCTAGATACAA 815
Query 844 CGATTGTATTCCCTGAAGATCAGCTTTTGCAAAGATTGTTCACTCCATCGCTTGCTCAGA 903
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CGATTGTATTCCCCGAAGATCAGCTTTTGCAAAGATTGTTCACTCCATCGCTTGCTCAGA 875
Query 904 AATATGAAGAACTGTACCGTCAAAATGGTGTTAAGTTTGTCAAGGGCGCTTCCATAAATA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 AATATGAAGAACTGTACCGTCAAAATGGTGTTAAGTTTGTCAAGGGCGCTTCCATAAATA 935
Query 964 ACTTGGAAGCAGGTTCGGATGGGCGTGTATCAGCTGTTAAGCTTGCTGATGGGTCTACAA 1023
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 ACTTAGAAGCAGGTTCAGATGGGCGTGTATCAGCTGTTAAGCTTGCTGATGGGTCTACAA 995
Query 1024 TTGAGGCAGACACGGTTGTAATTGGAATTGGAGCTAAGCCTGCTATTGGCCCCTTTGAAA 1083
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 996 TTGAGGCAGACACGGTTGTAATCGGAATTGGAGCTAAGCCTGCTATTGGCCCCTTTGAAA 1055
Query 1084 CTTTGGCCATGAACAAATCAATTGGAGGAATTCAGGTCGATGGCTTGTTCAGGACAAGTA 1143
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 CTTTGGCCATGAACAAATCTATTGGAGGAATTCAGGTCGATGGCTTGTTCAGGACAAGTA 1115
Query 1144 CCCCTGGAATTTTTGCTATTGGAGATGTCGCAGCCTTCCCTTTGAAGATATATGATAGGA 1203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1116 CCCCTGGAATTTTTGCTATTGGAGATGTCGCAGCCTTCCCTTTGAAGATATATGATCGGA 1175
Query 1204 TGACTCGAGTTGAACATGTTGATCACGCCCGCCGCTCTGCACAACACTGTGTGAAATCAC 1263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1176 TGACTCGAGTTGAACATGTTGATCACGCCCGCCGCTCTGCACAACACTGTGTGAAATCGC 1235
Query 1264 TACTCACGGCACACACTGACACGTACGATTATCTTCCATATTTCTACTCAAGAGTATTCG 1323
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1236 TGCTCACGGCACACACTGACACGTACGATTATCTTCCTTATTTCTACTCAAGAGTATTCG 1295
Query 1324 AGTATGAAGGAAGCCCAAGAAAAGTGTGGTGGCAGTTTTTCGGAGATAATGTGGGAGAAA 1383
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1296 AGTATGAAGGCAGCCCAAGAAAAGTTTGGTGGCAGTTTTTCGGAGATAATGTGGGAGAAA 1355
Query 1384 CAGTGGAGGTTGGGAACTTTGACCCGAAAATCGCTACCTTCTGGATTGAATCTGGCAGGT 1443
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1356 CAGTTGAGGTTGGGAACTTCGACCCGAAAATCGCTACCTTCTGGATTGAATCTGGTAGGT 1415
Query 1444 TGAAAGGTGTTCTAGTAGAAAGCGGATCGCCTGAGGAGTTCCAGCTTCTACCAAAGCTAG 1503
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1416 TGAAAGGTGTTCTTGTAGAAAGTGGATCACCTGAGGAGTTCCAGCTTCTACCAAAGCTAG 1475
Query 1504 CAAGAAGCCAACCACTTGTCGATAAGGCTAAACTCGCAAGCGCATCTTCAGTCGAAGAAG 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 CAAGAAGCCAACCACTTGTCGATAAGGCTAAACTCGCAAGCGCATCTTCAGTCGAAGAAG 1535
Query 1564 CTCTCGAGATTGCTCAAGCCGCTCTACAGAGTTAGAGA-AGGAAACTTCATGGAGttttt 1622
| ||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||
Sbjct 1536 CCCTCGAAATTGCTCAAGCCGCTCTACAGAGTTAGAGAGAG-AAACTTGATGGAGTTTTT 1594
Query 1623 ttA-ATAGCTTTTGGG-TTCAGAGAAATCAACATCTTTTATTCCCGGTGAGAGTTATTCA 1680
|| |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1595 TTTTATAGCTTTTGGGGTTCAGAGAAATCAACATCTTTTATTCTCGGTGAGAGT-ATTCA 1653
Query 1681 TCTTTCCATTGGAAAAATGATCTATAGAGAGCACTGTTGTCAATAATCTCCTCGAATAAT 1740
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1654 TCTTTCCATTGGAAAAATGATCTATAGAGAGCACTGTTGTCAATAATCTCCACGAATAAT 1713
Query 1741 TTATAACCTCTTTTTG-GGATAATCATATTTTGCTCATTAGAGAGCTTTGTTTCTAATAA 1799
||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1714 TTATAACCTCTTTTTAAGG-TAATCATATTTTGCTCATTAGAGAGCTTTGCTTCTAATAA 1772
Query 1800 AATCTATGTTAGTCACTGAGATAGATAAAGATCGTTTTCTCATGATCTATGGGTTGTTTC 1859
|||| ||| | | ||| ||| ||||||||||||||||||||||||||||
Sbjct 1773 AATCCATG-----C--T-AGA--GAT------CGTTTTCTCATGATCTATGGGTTGTTTC 1816
Query 1860 GTGGATCATTAAAATATTTATTTATTTAGATTTCTT 1895
|||||| ||||||| |||||||| |||||||||||
Sbjct 1817 ATGGATCGTTAAAATGTTTATTTAATTAGATTTCTT 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73514172850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5