BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64090.2
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474946 jgi|Araly1|474946|fgenesh2_kg.2__76__AT1G64090.1 1112 0.0
Ahg493828 jgi|Araly1|493828|fgenesh2_kg.7__3261__AT5G41600.1 483 2e-135
> Ahg474946 jgi|Araly1|474946|fgenesh2_kg.2__76__AT1G64090.1
Length=1012
Score = 1112 bits (602), Expect = 0.0
Identities = 695/739 (94%), Gaps = 9/739 (1%)
Strand=Plus/Plus
Query 572 CTGCCGACATTTTCCTGTGGAGGAACAAGAAGGTATCAGGAGGAGTATTGGGTGCTGCAA 631
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 280 CTGCCGACATTTTCCTGTGGAGGAACAAGAAGGTATCAGGAGGAGTGTTGGGTGCTGCGA 339
Query 632 CTGTTTCCTGGATCTTATTCGAGTTACTTGAGTACAATCTTCTCACACTCTTCGGCCACA 691
||||||||||||||||||| ||||||||||| |||||||| || || || || |||||||
Sbjct 340 CTGTTTCCTGGATCTTATTTGAGTTACTTGAATACAATCTCCTTACTCTTTTTGGCCACA 399
Query 692 TTTCAATTCTTGCTCTCGCAGTATTGTTCTTGTGGTCTAGTGCTAGTACCTTCATTCACA 751
|||||||||||| ||| || || |||||||||||||||||||||| ||||||||||||||
Sbjct 400 TTTCAATTCTTGTTCTTGCGGTTTTGTTCTTGTGGTCTAGTGCTACTACCTTCATTCACA 459
Query 752 AGTCACCTCTTCATATCCCTGAAGTTCACATCCCCGAGGATGTTGTTCTTCAGCTTGCTT 811
||||||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 460 AGTCACCTCCTCATATCCCTGAAGTTCACATCCCTGAGGAAGTGGTTCTTCAGCTTGCTT 519
Query 812 CTGGATTAAGGATTGAAATCAATCGTGGATTTACTGTTCTTAGGGACATTGCATCAGGAA 871
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 520 CTGGATTAAGGATTGAGATCAACCGTGGTTTTACTGTTCTTAGGGACATTGCATCAGGAA 579
Query 872 GAGATCTTAAGAAGTTTCTGTTGGTGATTGCTGGTTTATGGGTTTTGTCCAAAGTTGGTA 931
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GAGATCTCAAGAAGTTTCTTTTGGTGATTGCTGGTTTATGGGTTTTGTCCAAAGTTGGTA 639
Query 932 GCTCCTGCAACTTCTTGACCTTAATCTACATCGCAACTGTACTTCTCTTCACGATTCCCG 991
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 640 GCTCCTGCAACTTCTTGACCTTAATCTACATTGCAACTGTTCTTCTCTTCACGATTCCCG 699
Query 992 TGCTTTACGAGAAGTATGAAGATAAAGTAGATGACTTTGGTGAAAAGGCGATGAGGGAGA 1051
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TGCTTTACGAGAAGTACGAAGATAAAGTAGATGACTTTGGTGAAAAGGCGATGAGGGAGA 759
Query 1052 TCAAGAAGCAATACGTGGAGTTCGACGTGAAGGTTTTGAGTAAGGTGATGAGCAAAATTC 1111
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 760 TCAAGAAGCAATACGTGGAGTTTGATGTGAAGGTTTTGAGTAAGGTGATGAGCAAAATCC 819
Query 1112 CTAAAGGAGCCTTTGCCTTTATCAAGAAGAAAGATTAGAGAGTGTGTAAGTTTCTCTCAT 1171
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 820 CTAAAGGAGCCTTT---T--A-CAAGAAGAAAGATTAGAGAGTGTGTAAGTTTCTCTCAT 873
Query 1172 CATCATTATC--C-GAGATTATTCAAGATTGATATATAAATCTCGAAGCATTGttttttt 1228
|||||||||| | |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 874 CATCATTATCATCTGAGATTCTTCCAGATTGATATATAAATCTCGAAGCATTGTTTTTTT 933
Query 1229 GGCTGTTGGTTAATAACCCTTTATTCTCTCAAATATCTGCTATATGGATTTTATTCGGGT 1288
||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||
Sbjct 934 GGCTGTTGGTTAATAACCCTTTATTCTCTTAAATTTCTGATATGTGGATTTTATTCGGGT 993
Query 1289 TTTAACCAAATTTTATAGC 1307
|||||||||||||||||||
Sbjct 994 TTTAACCAAATTTTATAGC 1012
Score = 412 bits (223), Expect = 3e-114
Identities = 261/279 (94%), Gaps = 3/279 (1%)
Strand=Plus/Plus
Query 248 TTTTCGTTTTCTTCTCCGTTTCTCGCTCATCGCTTACTGAAACCAGAAACAAGTTTAGGG 307
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCGTTTTCTTCTCCGTTTCTCACTCATCGCTTACTGAAACCAGAAACAAGTTTAGGG 60
Query 308 TTTTTGCGGAGGTTTCAAAGTTAACAATGGCGGAAGAGCACAAGCACGAGGAATCGATCA 367
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 61 TTTTTGCGGAGGTTTCAAAGTTAACAATGGCGGAAGAACACAAGCACGAAGAATCAATCA 120
Query 368 TGGAGAAGATCTCTGAGAAGATCCATGGTCACGATGACt-ct--tcttcttcttcttcCG 424
|||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 121 TGGAGAAGATAGCTGAGAAGATCCATGGTCACGATGACGGCTCGTCTTCGTCTTCTTCCG 180
Query 425 ATTCGGATGACGATAAGAACTCTGCGTCTCTCAAAACCAAGATTTATCGTCTTTTCGGAA 484
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 ATTCAGATGACGATAAGAAATCTGCGTCTCTCAAAACGAAGATTTATCGTCTTTTCGGAA 240
Query 485 GAGAACAGCCTCTTCACAAGCTTTTCGGTGGCGGAAAAC 523
| |||||||||||||||||| |||| || ||||||||||
Sbjct 241 GGGAACAGCCTCTTCACAAGGTTTTTGGCGGCGGAAAAC 279
> Ahg493828 jgi|Araly1|493828|fgenesh2_kg.7__3261__AT5G41600.1
Length=1072
Score = 483 bits (261), Expect = 2e-135
Identities = 497/609 (82%), Gaps = 24/609 (4%)
Strand=Plus/Plus
Query 572 CTGCCGACATTTTCCTGTGGAGGAACAAGAAGGTATCAGGAGGAGTATTGGGTGCTGCAA 631
|||| || || ||||| |||||||||||||||||||| || ||||| || ||||||| ||
Sbjct 285 CTGCTGATATATTCCTTTGGAGGAACAAGAAGGTATCTGGTGGAGTCTTTGGTGCTGTAA 344
Query 632 CTGTTTCCTGGATCTTATTCGAGTTACTT-GAGTACAATCTTCTCACACTCT-TCGGCCA 689
||| || ||| | |||||||||||| || || ||| |||| ||| | | | || | ||
Sbjct 345 CTGCGTCTTGGGTATTATTCGAGTTA-TTCGAATACCATCTCCTCGC-TTTTCTCTGTCA 402
Query 690 CATTT-CAATTCTTGCTCTCGCAGTATTGTTCTTGTGGTCTAGTGCTAGTACCTTCATTC 748
| ||| | ||| ||||||| |||| ||||||||||||||||| |||| ||||||| || |
Sbjct 403 C-TTTGCGATTTTTGCTCTTGCAGCATTGTTCTTGTGGTCTAATGCTTGTACCTTTATCC 461
Query 749 ACAAGTCACCTCTTCATATCCCTGAAGTTCACATCCCCGAGGATGTTGTTCTTCAGCTTG 808
||||| || ||| ||| ||||| |||||||||||||| || ||| ||||||||| ||||
Sbjct 462 ACAAGGCAACTCCTCACATCCCGGAAGTTCACATCCCTGAAGATCCTGTTCTTCAACTTG 521
Query 809 CTTCTGGATTAAGGATTGAAATCAATCGTGGATTTACTGTTCTTAGGGACATTGCATCAG 868
||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 522 TTTCTGGATTAAGGATTGAAATCAATCGTGGATTGACCGTTCTTAGGAACATTGCATCAG 581
Query 869 GAAGAGATCTTAAGAAGTTTCTGTTGGTGATTGCTGGTTTATGGGTTTTGTCCAA-AGTT 927
||| |||| | ||||| ||| | |||| |||| ||| || ||||||||||||| | ||
Sbjct 582 GAAAAGATGTCAAGAAATTTATCCTGGTAATTGTTGGCTTGTGGGTTTTGTCCATTA-TT 640
Query 928 GGTAGCTCCTGCAACTTCTTGACCTTAATCTACA-TCGCAACTGTACTTCTCTTCACGAT 986
|| |||| || |||||||||||| || |||| | | || ||||| ||||||||||| ||
Sbjct 641 GGCAGCTGCTACAACTTCTTGACATTGTTCTATAGT-GCTACTGTCCTTCTCTTCACCAT 699
Query 987 TCCCGTGCTTTACGAGAAGTATGAAGATAAAGTAGATGACTTTGGTGAAAAGGCGATGAG 1046
||| ||||||||||| ||||| || || |||||||||| |||||| || ||||||||||
Sbjct 700 TCCTGTGCTTTACGAAAAGTACGAGGACAAAGTAGATGCCTTTGGCGAGAAGGCGATGAA 759
Query 1047 GGAGATCAAGAAGCAATACGTGG-AGTTCGACGTGAAGGTTTTGAGTAAGGTGATGAGCA 1105
|||||||||||||||||||| | | | ||| | |||||||||||||||||| ||||||
Sbjct 760 GGAGATCAAGAAGCAATACGCAGTACT-CGATGAGAAGGTTTTGAGTAAGGTTCTGAGCA 818
Query 1106 AAATTCCTAA-AGGAGCCTTTGCCTTTATCAAGAAGAAAGATTAGAGAGTGTGTAAGTT- 1163
| ||||| || |||||| | || | ||||||||| ||||| || | ||||||||
Sbjct 819 AGATTCC-AAGAGGAGC-TCTGA----A-CAAGAAGAAGGATTA-AG-GAATGTAAGTTA 869
Query 1164 T-CTCTCAT 1171
| |||||||
Sbjct 870 TTCTCTCAT 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5