BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64150.1
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906998 jgi|Araly1|906998|Al_scaffold_0002_79 1685 0.0
> Ahg906998 jgi|Araly1|906998|Al_scaffold_0002_79
Length=1107
Score = 1685 bits (912), Expect = 0.0
Identities = 1049/1115 (94%), Gaps = 10/1115 (1%)
Strand=Plus/Plus
Query 99 atGCTAAGTTTGAATCTCTCGGAGTCGCTTCGCATTCCATTCCAGAACCCTAGGCCTCCC 158
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 1 ATGCTAAGTTTGAATCTCTCCGAGTCGCTTCGCATTCCATTTCAAAACCCTAGGCCTCCC 60
Query 159 AAATCCGATTTTTCTTCTACTTCTTCTTCTCCTTCCTCATCGTCGAGGAGATGCGTCTCC 218
|||| ||| ||| | | || |||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATTCGA---TTC-T-T-GTTGTTCTTCTCCTTCCTCATCGTCGAGGAGATGCGTCTCC 114
Query 219 GCTTATCCAATTCCGATCGGGTTTTCGGTTCGTAATCAATACTTTTCTAGATGTTTGACT 278
|||| |||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 115 GCTTGTCCAATTCCGATAGGGTTTTCGTTTCGTAATCAATACTTCTCTAGAGGTTTGACT 174
Query 279 CAATTGCGTCGAAATGAATCTCAGCAGCTAGGTTTTCGATGCTTCCAACGAAACGATGCG 338
||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||| |
Sbjct 175 CAATTGCGTCGAAATGAATCTCAGCAGCTTGAATTTCGATGCTTCCGACGAAATGATTCC 234
Query 339 GCTTGTTACCTCGAGAAAGCTGAGTCTGAAGAGCATGA-TAGAAATCTTGATGTTCTGGT 397
||||||||||| ||||| ||||| |||||||| || | |||||||| ||||||| ||||
Sbjct 235 GCTTGTTACCTTGAGAAGGCTGAATCTGAAGAAAAT-ATTAGAAATCGTGATGTTTTGGT 293
Query 398 TGAGTCATCGATAGCTCACTCAAGAAGAGAGATTCAGAGAGTTCTTATGTTCTTGGCGGT 457
|||||||||| ||||||||||||||||||||| || ||| |||||| ||||||||||||
Sbjct 294 TGAGTCATCGGTAGCTCACTCAAGAAGAGAGACTCTTAGACTTCTTAAGTTCTTGGCGGT 353
Query 458 ATCAGGTTCGGTTGCATTACTAGGCACTGATCCAGCTTTTGCAGCTTCGTCAATTCCCAA 517
||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| ||||
Sbjct 354 ATCAGGTTCGGTTGCATTACTCGGCAATGATCCAGCTTTTGCGGCTTCGTCAATTGCCAA 413
Query 518 TGTGACACAGTCACTTGTCACTTCTTTTGGAGACCTTGGAGATATTAGCTCAGGTTTTGC 577
|| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 414 TGGGACGCAGTCACTTGTCACTTCTCTTGGAGACCTTGGAGATATTAGCTCAGGTTTTGC 473
Query 578 TTCGGC-TTTCTTGCTTATCTTTTTCTCTGAACTTGGAGACAAGACTTTCTTCATTGCGG 636
|||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 474 TTCGGCGTTT-TTGCTTATATTTTTCTCTGAACTTGGGGACAAGACTTTCTTCATTGCGG 532
Query 637 CCCTTTTAGCAGCAAGGAACTCTGCTGCTACCGTATTCGTGGGGACTTTTGGCGCTCTAG 696
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTCTTTTAGCAGCAAGGAACTCTGCTGCTACCGTATTCGTGGGGACTTTTGGCGCTCTAG 592
Query 697 GGATAATGACGATAATATCTGTAGTGCTTGGACGCACTTTCCACTATGTCGATGAAGTTC 756
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 593 GGATAATGACGATTATATCTGTAGTGCTTGGACGTACTTTCCACTACGTCGATGAAGTTC 652
Query 757 TTCCATTCAGGTTTGGTGGAACCGATTTGCCTATAGATGATATTGCAGCAGTTTGTCTTC 816
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTCCGTTCAGGTTTGGTGAAACCGATTTGCCTATAGATGATATTGCAGCAGTTTGTCTTC 712
Query 817 TGGTGTACTTCGGTGTTTCAACGTTATTAGATGCTGTTTCAGACGAGGGTAAAGCTGACG 876
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 713 TGGTTTACTTCGGTGTTTCAACGTTATTAGACGCTGTTTCGGACGAGGGTAAAGCTGACG 772
Query 877 AAGAACAGAAAGAAGCAGAACTAGCGGTTTCAGAGCTTTCAGGTAATGGAGCCGGGATAG 936
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 773 AAGAACAGAAAGAAGCAGAACTAGCGGTTTCAGAGCTTTCAGGTAGTGGAGCCGGGATAG 832
Query 937 TAGCAGCCGCGAACACCATCATCAGCACTTTCGCATTGGTTTTTGTTGCGGAATGGGGTG 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TAGCAGCCGCGAACACCATCATCAGCACTTTCGCATTGGTTTTTGTTGCGGAATGGGGTG 892
Query 997 ACAAATCCTTCTTCTCAACAATTGCTCTTGCGGCTGCATCATCACCATTGGGTGTCATCG 1056
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 893 ACAAATCCTTCTTCTCAACAATTGCTCTTGCGGCTGCATCATCGCCATTGGGTGTCATCG 952
Query 1057 CTGGAGCGTTGGCGGGTCACGGTGCTGCGACTCTTCTTGCAGTATTGGGCGGTTCTTTGC 1116
||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 953 CTGGAGCATTGGCGGGTCACGGTGCTGCGACTCTGCTTGCGGTATTGGGAGGTTCTTTGC 1012
Query 1117 TAGGAAATTTCTTATCAGAGAAGGCAATTGCTTATGTCGGAGGAGTTCTGTTTCTCGTGT 1176
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TCGGAAATTTCTTATCAGAGAAGGCAATTGCTTATGTCGGAGGAGTTCTGTTTCTCGTGT 1072
Query 1177 TTGCTGCTGTGACGGTGGCTGAGATCGTTACGTAA 1211
|||||||||||||||||||||||||||||||||||
Sbjct 1073 TTGCTGCTGTGACGGTGGCTGAGATCGTTACGTAA 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50474742108
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5