BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64230.4 Length=1019 Score E Sequences producing significant alignments: (Bits) Value Ahg906988 jgi|Araly1|906988|Al_scaffold_0002_69 632 1e-180 Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4 451 4e-126 Ahg478172 jgi|Araly1|478172|fgenesh2_kg.3__873__AT3G08690.1 76.8 3e-13 > Ahg906988 jgi|Araly1|906988|Al_scaffold_0002_69 Length=447 Score = 632 bits (342), Expect = 1e-180 Identities = 364/375 (97%), Gaps = 0/375 (0%) Strand=Plus/Plus Query 327 GCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGTCCATCTGATAGTC 386 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 71 GCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGTCCATCCGATAGTC 130 Query 387 CTTATTCAGGCGGTGTCTTTCTCGTAACCATTCACTTCCCTCCGGATTATCCTTTCAAAC 446 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 131 CTTATTCAGGCGGAGTCTTTCTCGTAACCATTCACTTCCCTCCGGATTATCCGTTCAAAC 190 Query 447 CACCAAAGGTTGCATTCAGGACAAAAGTGTTCCACCCTAATGTCAACAGCAATGGAAGCA 506 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 191 CACCAAAGGTTGCATTTAGGACAAAAGTGTTTCACCCTAATGTCAACAGCAATGGAAGCA 250 Query 507 TTTGCCTTGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCATATCGAAGGTTTTGC 566 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 251 TTTGCCTCGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCATATCTAAGGTGTTGC 310 Query 567 TTTCGATATGTTCATTGTTAACGGACCCAAACCCAGATGATCCATTGGTTCCAGAGATTG 626 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 311 TTTCGATATGTTCATTGTTAACAGACCCAAACCCAGATGATCCATTGGTTCCAGAGATTG 370 Query 627 CTCACATGTACAAAACCGATAGAGCAAAGTATGAGTCTACTGCGAGAAGCTGGACTCAGA 686 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 371 CTCACATGTACAAAACCGATAGAGCTAAGTATGAGTCTACTGCGAGAAGCTGGACTCAGA 430 Query 687 AATATGCAATGGGAT 701 | ||||||||||||| Sbjct 431 AGTATGCAATGGGAT 445 Score = 119 bits (64), Expect = 5e-26 Identities = 68/70 (97%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 131 ATGGCTTCGAAAAGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCAACTTCC 190 |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGCTTCGAAACGGATCTTGAAAGAGCTCAAGGATCTTCAGAAGGATCCTCCAACTTCC 60 Query 191 TGCAGTGCTG 200 |||||||||| Sbjct 61 TGCAGTGCTG 70 > Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4 Length=675 Score = 451 bits (244), Expect = 4e-126 Identities = 340/387 (88%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 314 CATGTTTTGTTGTGCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 373 ||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 CAT-TTTTGTAG-GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 186 Query 374 CCAT-CTGATAGTCCTTATTCAGGCGGTGTCTTTCTCGTAACCATTCACTTCCCTCCGGA 432 || | | || ||||| |||||||||||||| |||||||| ||||||||||||||||| || Sbjct 187 CC-TGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCTGA 245 Query 433 TTATCCTTTCAAACCACCAAAGGTTGCATTCAGGACAAAAGTGTTCCACCCTAATGTCAA 492 || || |||||||| |||||||||||||| ||||| || ||||| ||||||||| |||| Sbjct 246 CTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAA 305 Query 493 CAGCAATGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCAT 552 |||||| |||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct 306 CAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTCACCAT 365 Query 553 ATCGAAGGTTTTGCTTTCGATATGTTCATTGTTAACGGACCCAAACCCAGATGATCCATT 612 || ||||| ||||| ||||||||||| ||||||| || ||||| |||||||| || || Sbjct 366 TTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCGTT 425 Query 613 GGTTCCAGAGATTGCTCACATGTACAAAACCGATAGAGCAAAGTATGAGTCTACTGCGAG 672 ||| ||||||||||| ||||||||||||||||| ||||| ||||| ||| | ||||| || Sbjct 426 GGTGCCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAGTACGAGGCCACTGCAAG 485 Query 673 AAGCTGGACTCAGAAATATGCAATGGG 699 || |||||||||||| ||||| ||||| Sbjct 486 AAACTGGACTCAGAAGTATGCCATGGG 512 > Ahg478172 jgi|Araly1|478172|fgenesh2_kg.3__873__AT3G08690.1 Length=731 Score = 76.8 bits (41), Expect = 3e-13 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 131 ATGGCTTCGAAAAGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCC 183 |||||||| || ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 102 ATGGCTTCTAAGAGGATTTTGAAGGAGCTCAAGGATCTCCAGAAGGATCCTCC 154 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37894179498 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5