BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64370.1 Length=742 Score E Sequences producing significant alignments: (Bits) Value Ahg474913 jgi|Araly1|474913|fgenesh2_kg.2__43__AT1G64370.1 900 0.0 > Ahg474913 jgi|Araly1|474913|fgenesh2_kg.2__43__AT1G64370.1 Length=716 Score = 900 bits (487), Expect = 0.0 Identities = 670/750 (89%), Gaps = 45/750 (6%) Strand=Plus/Plus Query 1 ACAAACAACACAAATACAAACCATAAAA-TCACATCTTC-TTTACAACAATGCAGTACTA 58 ||| |||||| ||||||||||||||||| |||||||||| |||| ||| ||||||||||| Sbjct 1 ACACACAACATAAATACAAACCATAAAACTCACATCTTCTTTTA-AAC-ATGCAGTACTA 58 Query 59 CGAAAACCGTGAGAAAGACTACTACGAGGTGGCTCAAGGCCAACGCAATGGTTATGGCCA 118 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 59 CGAAAACCGTGAGAAAGACTACTACGAGGTGGCACAAGGCCAACGCAATGGTTATGGCCA 118 Query 119 GAGCCAGAGCCACAACCACGAGGGATATGGCCAGAGCCAGAGCCGTGGGGGATATGGCCA 178 ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 119 GAGCCAG-G-----GCCACGAGGGATATGGTCAGAGCCAGAGCCGTGGGGGATATGGCCA 172 Query 179 GATCCATAACCGTGAGGGTTATAACCAAAACCGTGAGGGATATAGCCAAAGCCAGAGTCG 238 | || || | | |||||||||||||||||||| ||||||||||| Sbjct 173 G----AT--CC---A--G----------AACCGTGAGGGATATAGCCAGAGCCAGAGTCG 211 Query 239 CCCAGTATATGGGCTTAGCCCGACTTTGAACCACCGTAGCCACGGTGGGTTTCTTGATGG 298 |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 212 CCCAGTATATGGGCAAAGCCCGACTTTGAACAACCGTAGCCACGGTGGGTTTCTTGATGG 271 Query 299 GCTCTTCAAGGGTCAAAATGGCCAAAAGGGTCAGAGTGGGCTAGGCACGTTTCTAGGGCA 358 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 272 GCTCTTCAAGGGTCAAAATGGCCAAAAGGGTCAGAGTGGCCTAGGCACGTTTCTAGGGCA 331 Query 359 ACACAAGAGCCAAGAGGCTAAAAAGAGTCAAGGACATGGGAAGCTCTTGGGGCAACATGA 418 || |||||||||||||| ||| ||| |||||||||||||||| ||| | |||| | | | Sbjct 332 ACGCAAGAGCCAAGAGGATAATAAGGGTCAAGGACATGGGAAACTCATAGGGC-AGA--A 388 Query 419 CCAGAAGAAAACTCATGAGACAAACAGTGGTCTTAATGGCCTTGGAATGTTCATTAACAA 478 |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 389 CCAGAAGACAACTTATGAGACAAACAAAGGTCTTAATGGCCTTGGAATGTTCATTAACAA 448 Query 479 TGGTGAGAAGAAACATAGGAGGAAAAGTGAGCACAAGAAGAAGAACAAGGATGGGCATGG 538 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 449 TGGTGAGAAGAAAAATAGGAGGCAAAGTGAGCACAAGAAGAAGAACAAGGATGGGCATGG 508 Query 539 CAGTGGTAATGAGAGTGGAAGCAGCAGCGGTAGCGACAGCGACTGAATATCATATGCTTG 598 |||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| ||| Sbjct 509 CAGTGGCAATGAGAGTGGAAGCAACAGCGGTAGCGACAGCGACTGAATCTGATATGTTTG 568 Query 599 CTCTGAAGAAAGTAACGCTTCTAAGAGTGA--CTA-A-A--TTAAGTACTTGGATGTAAT 652 |||| || ||||||||||||||||||| || ||| | | ||||||||||||||||||| Sbjct 569 CTCTAAAAAAAGTAACGCTTCTAAGAGAGAGACTATACAAATTAAGTACTTGGATGTAAT 628 Query 653 ACTTAAAA-TAAAATCACTTAGGTGGTTGTCT-T-TGTGTGTCCTATATAACCTCGCTAC 709 |||||||| ||||||||||||||||||||| | | ||||||||||||||||||| ||||| Sbjct 629 ACTTAAAAATAAAATCACTTAGGTGGTTGTGTCTCTGTGTGTCCTATATAACCTTGCTAC 688 Query 710 TACATGAATCTACTTTTATAGTTTTGTTGC 739 || |||||||||||||||| ||||||||| Sbjct 689 TA--TGAATCTACTTTTATATTTTTGTTGC 716 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27334131489 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5