BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64385.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474911 jgi|Araly1|474911|fgenesh2_kg.2__41__AT1G64385.1 1670 0.0
Ahg353720 jgi|Araly1|353720|fgenesh1_pg.C_scaffold_7000893 58.4 2e-07
Ahg912327 jgi|Araly1|912327|Al_scaffold_0001_2581 56.5 6e-07
> Ahg474911 jgi|Araly1|474911|fgenesh2_kg.2__41__AT1G64385.1
Length=1415
Score = 1670 bits (904), Expect = 0.0
Identities = 1238/1385 (89%), Gaps = 80/1385 (6%)
Strand=Plus/Plus
Query 156 ATTTTGAGTTACTTTAAGCGTCGTCAAAAATGGAGGTGAATCTCGTTTTGCTTCTGTGTA 215
||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct 103 ATTTTGAGTTAGTTTAAGTGTCGTCAAACATGGAGCTGAATCTCGTTTTGCTTCTGTGTA 162
Query 216 TAGCTTTGATCTTCGTCGCTGATACTAAGGTTGA-TGGA-GA--G-GCACAAGTTGTTGT 270
|||||||||| ||||||||||||||||||||||| | | | | | | || | |
Sbjct 163 TAGCTTTGATTTTCGTCGCTGATACTAAGGTTGATTTCACTATTGAG-ATTAGCT-CCAT 220
Query 271 CTCGAATTCGAATTTGACAGATACAAGATTTGGTGGTGGCTCTGAAAATGTTACTGATTC 330
| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 221 CACGAATTCGAATTTGACGGATACAAGATTTGGTGGTGGTTCTGAAAATGTTACTGA--- 277
Query 331 TTCTTCTAAGAGTATAATTACTATAGATCATTCCAAAAACTCGACTAATGATGATGATAC 390
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TTCTTCGAAGAG--T-ATTACTATAGATCATTCCAAAAACTCGACTAATGATGATGATAC 334
Query 391 ACAGTTGGGTGATGGATCTAAGATGATTGGTAGTGATAGTAGTAAGAGTGACCAAGGGAA 450
|||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 335 ACAGTTGGGTGATGGATCTAAGCTGATTGGTAGTGATAGTAGTAAGAGT-------GG-T 386
Query 451 GATAGCTAGTGATGAGAGTGATAAGGAAGAGGAGGAGGCTGTGAGCAAGAATTCTTCAAG 510
|| | ||||| | | | ||| | |||||||| |||||||| |||||||||||
Sbjct 387 GA-A---AGTGA--AAACAG-TAA-G--GAGGAGGAAGCTGTGAG---TAATTCTTCAAG 433
Query 511 GAAGAAACAAGGGTTTCATGGTGAGGAATGTGATCCATCTAATATGTGTA-TAGATGATG 569
||||||| |||| ||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 434 GAAGAAAGAAGGCTTTCATGGTGAAGAATGTGATCCATCTAATATGTGTACT-GATGATG 492
Query 570 AACATGAGTTTTCCGCTTGTCTGCGAGTTCCGGGTAACGATGCTCCTCATCTCTCACTTT 629
||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 493 AACATGAGTTTGCCGCTTGTCTGCGAGTTCCCGGTAACGATGCGCCTCATCTCTCACTTT 552
Query 630 TGATTCAGAACAAAGGCAAAAGGGCTTTGATTGTTACGATAACTGCTCCGGTTTTTGTTC 689
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |
Sbjct 553 TGATTCAGAACAAAGGCAAAAGGGCTTTGATTGTTACTATAACTGCTCCGGGTTTCGTCC 612
Query 690 GGTTAGAGAAAGATAAAGTCCAGCTTCTGCAAAACGAAGACA-TAAAGGTGAAAGTTTCT 748
||||||| || ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 613 GGTTAGACAAGGATAAAGTCCAGCTTCTGCAAAACGAAGACACT-AAGGTGAAAGTTTCT 671
Query 749 ATTAAGAAGGGAGGGTCCAACGATAGCGCAATCGTACTAGCTTCCAGTAAAGGACGTTGC 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ATTAAGAAGGGAGGGTCCAACGATAGCGCAATCGTACTAGCTTCCAGTAAAGGACGTTGC 731
Query 809 AGGCTTGAATTAAAGGATTTGGCAGCAGCAGCACATGAAACAGAAAGCGATGATACAGTT 868
|| ||||||||||||||||| | |||||||| |||||| |||||||||| |||||||||
Sbjct 732 AGCCTTGAATTAAAGGATTT-G--GCAGCAGCTCATGAATCAGAAAGCGACGATACAGTT 788
Query 869 TCTGTTTCTCGTCCTTCTA-TTCTCAATATCAGTTCGCGAACACTCATCGTCATCATCAT 927
||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||
Sbjct 789 TCTGTTTCTCGTCCTTC-AGTTCTCAATATCAGTTCACGAACAGTCATCGTCATCATCAT 847
Query 928 GATCTCCTTCCTCGTACTCTCCCTTGTCATCATCCCGGTGATCATTCATGTTTACAAGAA 987
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 848 GATCTCCTTCCTCGTTCTCTCCCTTGTCATCATCCCAGTGATCATTCATGTTTACAAGAA 907
Query 988 CAAGTCACGGGGAAACAACAAATACCAGAGGCTAGATATGGAATTGCCAGTCTCTAACCC 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CAAGTCACGGGGAAACAACAAATACCAGAGGCTAGATATGGAATTGCCAGTCTCTAACCC 967
Query 1048 CGCATTGGTGACAAAATCTGACCAAGAAAGTGGTGATGATGGATGGAACAATAACTGGGG 1107
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 968 CGCATTGGTGACAAAATCAGATCAAGAAAGTGGTGATGACGGATGGAACAATAACTGGGG 1027
Query 1108 AGATGATTGGGACGATGAAAATGGTGGTGGAGACGAAGAACAGCCGAATACTCCGGTGTT 1167
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1028 AGATGATTGGGACGATGAAAATGGTGGTGGAGATGAAGAACAGCCGAATACTCCGGTGTT 1087
Query 1168 ACCACTCACACCGAGCCTCTCCTCTAGAGGGCTTGCTCCGAGAAGACTCAGTAAAGAAGG 1227
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1088 ACCACTCACACCGAGCCTCTCCTCTAGAGGGCTTGCTCCTAGAAGACTCAGTAAAGAAGG 1147
Query 1228 CTGGAAAGATTAGTTTCACTCTGCTTTCTCTTTGGTAATGCAATAGGAGAAAGACAAGGC 1287
||||||||||||||| ||||||||||||||||||||||| | | || | | |
Sbjct 1148 TTGGAAAGATTAGTTTAACTCTGCTTTCTCTTTGGTAATG-----G-A-AA-GT-A-G-- 1195
Query 1288 AGAGGAAAGTAGTGAAGAGGAGGCAAAATCAATATCCCACTCATCGTAACATAGACTTTG 1347
| | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 ---------T-G--AAGAGGAGGCAAAATCAATCTCCCACTCATCGTAACATAGACTTTG 1243
Query 1348 TTTAGACTTTGAATGAAATATTTTGCAACAGGTCGCTCTAtttttttttttatttttttt 1407
||| ||| ||| |||||||||| ||||||| | ||||||||||||| ||| |
Sbjct 1244 TTTTGACGTTGTATGAAATATTC-GCAACAGCTGGCTCTATTTTTTTGTTT-T------- 1294
Query 1408 ttttGAAATCACGAGGTAATCCTATTAGTGGTTATGAGATATCTGTTAGTTAATTCTCAA 1467
|||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1295 ----GAAATCACGAGGTAATTCTAGTAGTTGTTATGAGATATCTGTTAGTTAATTCTCAA 1350
Query 1468 TACTTTCTTCCTCAAATCAAATATTTATTGAAACTCTGAAATTGATTGCTGAAAATGTAA 1527
||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 1351 TACTTTCTTCCTCAAATCAAATATTCATTAAAACTCTGTAATTGATTGCTGAAAATGTAA 1410
Query 1528 CCTTG 1532
|||||
Sbjct 1411 CCTTG 1415
Score = 65.8 bits (35), Expect = 9e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 26 AGTGGTGCGTGGTGACTCACACAAGTCTCGAGCCAATC 63
||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AGTGGTGAGTGGTGACTCACACAAGTCTCGAGCCAATC 38
> Ahg353720 jgi|Araly1|353720|fgenesh1_pg.C_scaffold_7000893
Length=8568
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1495 TTGAAACTCTGAAATTGATTGCTGAAAATGTAAC 1528
|||| |||||||||||||||||||||||||||||
Sbjct 5480 TTGAGACTCTGAAATTGATTGCTGAAAATGTAAC 5513
> Ahg912327 jgi|Araly1|912327|Al_scaffold_0001_2581
Length=7857
Score = 56.5 bits (30), Expect = 6e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1496 TGAAACTCTGAAATTGATTGCTGAAAATGTAAC 1528
||| |||||||||||||||||||||||||||||
Sbjct 5478 TGAGACTCTGAAATTGATTGCTGAAAATGTAAC 5510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5