BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64390.1 Length=2660 Score E Sequences producing significant alignments: (Bits) Value Ahg924488 jgi|Araly1|924488|scaffold_200049.1 3149 0.0 Ahg489943 jgi|Araly1|489943|fgenesh2_kg.6__3077__AT4G11050.1 680 0.0 > Ahg924488 jgi|Araly1|924488|scaffold_200049.1 Length=1905 Score = 3149 bits (1705), Expect = 0.0 Identities = 1838/1904 (97%), Gaps = 2/1904 (0%) Strand=Plus/Plus Query 191 tctctctcttttttttAGCCATGGAGAAATTTGCGCCTGTCGCTGCTCTGTTACTGCTTC 250 ||||| ||||||||| || |||||||||||||||||| || ||||||||||||||||||| Sbjct 3 TCTCTATCTTTTTTTCAGTCATGGAGAAATTTGCGCCCGTAGCTGCTCTGTTACTGCTTC 62 Query 251 TTCTCTGTTTTCCGGTAGCTTTCTCCGGTCATGATTATGGTCAAGCTCTTTCCAAGAGTC 310 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 63 TTCTCTGTTTTCCGGTAGCTTTCTCCGGTCATGATTATGGTCAAGCTCTTTCAAAGAGTC 122 Query 311 TTCTCTTCTTCGAAGCTCAGAGATCTGGTGTTCTTCCTCGTAACCAAAGAGTCACTTGGC 370 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 123 TTCTCTTCTTCGAAGCTCAGAGATCTGGTGTTCTTCCTCGTAACCAGAGAGTCACTTGGC 182 Query 371 GCTCTCACTCCGGTCTCACCGACGGCAAATCAAGCGGCGTGAATCTGGTCGGAGGTTACT 430 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 GTTCTCACTCCGGTCTCACCGACGGCAAATCAAGCGGCGTGAATCTGGTCGGAGGTTACT 242 Query 431 ACGACGCCGGAGACAATGTGAAATTTGGATTACCGATGGCTTTCACGGTGACGATGATGG 490 ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 243 ACGACGCCGGAGACAATGTGAAATTCGGACTACCGATGGCTTTCACGGTGACGATGATGG 302 Query 491 CGTGGAGTGTGATTGAGTACGGGAATCAATTACAAGCCAACGGCGAGCTTGGAAACTCCA 550 |||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||| Sbjct 303 CGTGGAGTGTGATTGAATACGGTAATCAGTTACAAGTTAACGGCGAGCTTGGAAACTCCA 362 Query 551 TTGACGCCATTAAATGGGGTACTGATTATTTCATCAAAGCCCATCCTGAGCCCAACGTCC 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 TTGACGCCATTAAATGGGGTACTGATTATTTCATCAAAGCCCATCCTGAGCCCAACGTCC 422 Query 611 TTTACGGCGAGGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAA 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 TTTACGGCGAGGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAA 482 Query 671 TGACGACGGACCGGAAAGCTTACAGGATAGATCCGAGTAATCCCGGGTCGGATCTTGCCG 730 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 483 TGACGACGGACCGTAAAGCATACAGGATAGATCCGAGTAATCCCGGGTCGGATCTTGCCG 542 Query 731 GAGAAACAGCAGCCGCCATGGCCGCCGCATCAATTGTTTTCCGCCGATCTAACCCTGTTT 790 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 543 GAGAAACAGCAGCCGCCATGGCCGCCGCATCAATTGTGTTCCGCCGATCTAACCCTGTTT 602 Query 791 ACTCTAGGCTACTACTCACTCACGCCTATCAGTTGTTTGATTTCGCCGACAAATACAGAG 850 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 ACTCTAGGCTACTACTCACTCACGCCTATCAGTTGTTTGATTTCGCCGACAAATACAGAG 662 Query 851 GAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACA 910 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 663 GAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGTGGTTACA 722 Query 911 ATGACGAGTTATTGTGGGCCGCTGCGTGGCTATACCAAGCTTCGAACAATCAGTTCTACT 970 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 723 ATGACGAGTTACTGTGGGCAGCTGCGTGGCTATACCAAGCTTCGAACAATCAGTTCTACT 782 Query 971 TGGACTACTTGGGTCGCAACGGTGACGCCATGGGTGGTACCGGTTGGTCCATGACTGAGT 1030 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 783 TGGACTACTTGGGTCGCAACGGTGACGCCATGGGTGGAACCGGTTGGTCTATGACTGAGT 842 Query 1031 TTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGTTTTTGATGCAAG 1090 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 843 TCGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGTTTTTGATGCAAG 902 Query 1091 GCAAAGCAGGACGTCACGCACCTGTGTTCAGGAAGTATCAAGAGAAAGCTGATTCCTTTA 1150 ||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 903 GCAAAGCAGGAAGGCACGCGCCTGTGTTCAGGAAGTTTCAAGAGAAAGCTGATTCCTTTA 962 Query 1151 TGTGTTCCTTGTTGGGTAAAAGCTCGAGGAACATTCAGAAGACACCAGGTGGTTTGATTT 1210 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 963 TGTGTTCCTTGTTGGGTAAAAGCTCGAGGAACATTCAGAAGACACCTGGTGGTTTGATTT 1022 Query 1211 TCAGACAACGTTGGAACAATATGCAGTTTGTCACAAGCGCTTCCTTCTTGACCACGGTTT 1270 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1023 TCAGACAACGTTGGAACAATATGCAGTTTGTCACTAGTGCTTCCTTCTTGACCACGGTTT 1082 Query 1271 ACTCAGATTACCTAACTTCTTCTCGAAGCAACTTGAGATGTGCCGCGGGAAATGTCGCAC 1330 |||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| || | Sbjct 1083 ACTCTGATTACCTTACTTCTTCGCGAAGCAACTTGAGATGTGCCGCTGGAAATGTTGCTC 1142 Query 1331 CTTCGCAGCTTCTTTCCTTTGCTAAATCTCAGGTGGATTATATTCTTGGAGATAACCCGA 1390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1143 CTTCGCAGCTTCTTTCCTTTGCTAAATCTCAGGTGGATTATATTCTTGGAGATAACCCGA 1202 Query 1391 GAGCTACCAGCTACATGGTTGGTTATGGTAACAATTTCCCTCAGAGAGTTCACCACAGAG 1450 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1203 GAGCAACCAGCTACATGGTTGGTTATGGTAACAATTTCCCTCAGAGAGTTCACCACAGAG 1262 Query 1451 GCTCTTCCATCGTCTCTGTCAAGGTGGACCGTACATTTGTCACCTGCCGAGGTGGATATG 1510 |||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1263 GCTCCTCCATTGTCTCTGTCAAGGTCGACCGTACATTTGTCACATGCCGAGGTGGATATG 1322 Query 1511 CCACTTGGTTCAGCCGTAAAGGCAGTGACCCGAACCTTCTCACTGGTGCTATTGTCGGTG 1570 |||| ||||| |||||||||||||| |||||||||||||||||||| |||||||| || | Sbjct 1323 CCACGTGGTTTAGCCGTAAAGGCAGCGACCCGAACCTTCTCACTGGCGCTATTGTAGGCG 1382 Query 1571 GCCCTGATGCTTACGACAATTTCGCTGACAGGAGAGATAACTATGAGCAGACTGAGCCTG 1630 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1383 GTCCTGATGCTTACGACAATTTCGCTGACAGGAGAGATAACTATGAGCAGACTGAGCCTG 1442 Query 1631 CTACTTACAACAATGCACCACTCCTTGGTGTTCTTGCTCGTCTCAGCAGTGGTCATTCCG 1690 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1443 CTACTTACAACAATGCACCACTTCTTGGTGTTCTCGCTCGTCTCAGCAGTGGTCATTCCG 1502 Query 1691 GTTATAGCCAGTTTCTTCCAGTGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTC 1750 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1503 GATATAGTCAGTTTCTTCCAGTGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTC 1562 Query 1751 GTAGACCGAAAGTGACTACTCCAGTCCGAGCTTCTGGTCCAGTGGCTATAGTTCAGAAGA 1810 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 1563 GTAGACCGAAAGTGACTACTCCTGTCCGAGCTTCTGGTCCAGTGGCTATAGTTCAGAGGA 1622 Query 1811 TAACTAGTTCATGGGTCTCAAAGGGAAGGACTTACTACAGATACTCAACAACTGTGATTA 1870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1623 TAACTAGTTCATGGGTCTCAAAGGGAAGGACTTACTACAGATACTCAACAACTGTGATTA 1682 Query 1871 ACAAATCTTCTAGACCTCTGAAAAGTCTCAACCTTTCGATCAAGAATCTCTATGGACCAA 1930 ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1683 ACAAATCTTCTAGACCTTTGAAAAGTCTCAACCTGTCGATCAAGAATCTCTACGGACCAA 1742 Query 1931 TCTGGGGACTCTCGAGATCAGGCAACTCGTTCGGTTTACCCTCGTGGATGCACTCATTGC 1990 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1743 TCTGGGGACTCTCGAGATCAGGAAATTCGTTCGGTTTACCCTCGTGGATGCACTCATTGC 1802 Query 1991 CATCCGGAAAATCCCTAGAGTTCGTCTACATTCACTCAACAACACCTGCAAATGTCGCGG 2050 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1803 CATCCGGAAAATCCCTAGAGTTCGTCTACATTCACTCAACAACACCTGCCAATGTCGCGG 1862 Query 2051 TATCCAGCTACACTTTGGCTTGA-TCAGACAACAACAACAACAT 2093 |||| |||||||| ||||||||| | |||| ||||||||||||| Sbjct 1863 TATCGAGCTACACGTTGGCTTGACT-AGACTACAACAACAACAT 1905 > Ahg489943 jgi|Araly1|489943|fgenesh2_kg.6__3077__AT4G11050.1 Length=1884 Score = 680 bits (368), Expect = 0.0 Identities = 1075/1409 (76%), Gaps = 78/1409 (6%) Strand=Plus/Plus Query 292 CAAGCTCTTTCCAAGAGTC-TTCTCTTCTTCGAAGCTCAGAGATCTGGTGTTCTTCCTCG 350 |||||||| ||| || | |||||||||| |||||||||||||| || || |||| Sbjct 85 CAAGCTCTAAGCAAAAG-CATTCTCTTCTTTGAAGCTCAGAGATCAGGACACCTCCCTCC 143 Query 351 TAACCAAAGAGTCACTTGGCGCTCTCACTCCGGTC-TCACCGACGGCAAATCAAGCGGCG 409 |||||| ||||| | ||||| ||||| ||||||| | | ||| ||||||||||| |||| Sbjct 144 TAACCAGAGAGTTTCATGGCGATCTCATTCCGGTCTTTA-CGATGGCAAATCAAGTGGCG 202 Query 410 TGAATCTGGTCGGAGGTTACTACGACGCCGGAGACAATGTGAAATTTGGATTACCGATGG 469 || |||| || ||||| || || ||||||||||||||||||||||| || | || |||| Sbjct 203 TGGATCTAGTGGGAGGATATTATGACGCCGGAGACAATGTGAAATTCGGGCTCCCAATGG 262 Query 470 CTTTCACGGTGACGATGATGGCG-TGGAGTGTGATTGAGTACGG-GAATCA-ATTACAAG 526 ||||||||||||| | || | | ||||| | || || ||||| | || | | || Sbjct 263 CTTTCACGGTGACAACAAT-GTGTTGGAGCATCATCGAATACGGTG-GCCAGCTGA-AAT 319 Query 527 CCAACGGCGAGCTTGGAAACT-CCATTGACGCCATTAAATGGGGTACTGATTATTTCATC 585 | |||||||| ||||| | | ||||||||||| |||| ||||| |||||||||||||| Sbjct 320 CTAACGGCGAACTTGGTCA-TGCCATTGACGCCGTTAAGTGGGGAACTGATTATTTCATT 378 Query 586 AAAGCCCATCCTGAGCCCAACGTCCTTTACGGCGAGGTTGGAGATGGCAACACCGACCAT 645 ||| |||| ||||| || |||||||| || || ||||| |||||||| || | |||||| Sbjct 379 AAAACCCACCCTGAACCTAACGTCCTCTATGGAGAGGTGGGAGATGGTAAGTCGGACCAT 438 Query 646 TACTGTTGGCAGAGACCGGAAGAAATGACGACGGACCGGAAAGCTTACAGGATAGATCC- 704 || |||||||| || || || |||||||| || || || || ||||||| || || || Sbjct 439 TATTGTTGGCAAAGGCCAGAGGAAATGACCACTGATCGTAAGGCTTACAAAATTGA-CCG 497 Query 705 GAGTAATCCCGGGTCGGATCTT-GCCGGAGAAACAGCAGCCGCCATGGCCGCCGCATCAA 763 || |||||||| || ||| || ||||||||||| || ||||| ||||| || || || | Sbjct 498 GAACAATCCCGGTTCAGAT-TTAGCCGGAGAAACCGCTGCCGCAATGGCTGCGGCTTCCA 556 Query 764 TTGTTTTCCGCCGATCT-AACCCTGTTTACTCTAGGCT-A-CTACTCAC-TCACGCCTAT 819 | ||||||||||| ||| | || | |||||| ||| | |||||| | ||||||| || Sbjct 557 TCGTTTTCCGCCGCTCTGATCCAT-CATACTCT--GCTGAGCTACTC-CGTCACGCCCAT 612 Query 820 CAGTTGTTTG-ATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGC 878 ||| | |||| |||| || |||||||||||||| ||||| ||||| || || || || || Sbjct 613 CAGCTATTTGAATTT-GCGGACAAATACAGAGGCAAATATGACAGTAGCATTACCGTGGC 671 Query 879 CCAGAAATACTACCGATCCGTCAGCGGTTACAATGACGAGTTATTGTGGGCCGCTGCGTG 938 || |||||||||||||||||||||||||||||||| || ||| | ||||| ||||| || Sbjct 672 ACAAAAATACTACCGATCCGTCAGCGGTTACAATGATGAATTACTATGGGCTGCTGCATG 731 Query 939 GCTATACCAAGCTTCGAACAATCAGT-TCTA-CTTGGACTACTTGGGTC--GCAACGGTG 994 | |||||||||| | || || | | | || || | | ||| | || | | || |||| Sbjct 732 GTTATACCAAGCAACCAATGATAAATAT-TATCTAG-ATTACCTCGG-CAAG-AATGGTG 787 Query 995 ACGCCATGGGTGGTACCGGTTGGTCCATGACTGAGTTTGGTTGGGACGTTAAGTACGCTG 1054 || | ||||| ||||| || ||||| |||||||| |||||||||||||||||||| |||| Sbjct 788 ACTCAATGGGCGGTACGGGCTGGTCGATGACTGAATTTGGTTGGGACGTTAAGTATGCTG 847 Query 1055 GTGTTCAAACCCTTGTTGCCAAGTTTTTGATGCAAGGCAAAGCAGGACGT-CACGCA-CC 1112 | |||||||||||||| || ||| ||||||||||||| |||| ||| | ||| | || Sbjct 848 GCGTTCAAACCCTTGTCGCTAAGGTTTTGATGCAAGGGAAAGGTGGA-GAACACACTGCC 906 Query 1113 TGTGTTC-AG-GAAGTATCAAGAGAAAGCTGATTCC-TTTATGTGTTCCTTGTTGGGTAA 1169 |||||| || | ||| ||| ||||||| || | ||||||||||| ||||| ||||| Sbjct 907 -GTGTTCGAGCG--GTACCAACAGAAAGCAGAA-CAGTTTATGTGTTCGTTGTTAGGTAA 962 Query 1170 AAGCTCGAGGAACATTCAGAAGACACCAGGTGGTTTGATTTTCAGACAACGTTGGAACAA 1229 |||| ||| ||||||| |||| || || || ||| | |||||| ||||| | |||||||| Sbjct 963 AAGCACGAAGAACATTAAGAAAACTCCCGGCGGTCTAATTTTCCGACAAAGCTGGAACAA 1022 Query 1230 TATGCAGTTTGTCACAAGCGCTTCCTTCTT-GACCACGGTTTACTCAGATTACCTAACTT 1288 ||||||||||||||| || || || ||||| | || | |||||||| || || || ||| Sbjct 1023 TATGCAGTTTGTCACGAGTGCCTCTTTCTTAG-CCGCCGTTTACTCCGACTATCTCTCTT 1081 Query 1289 CTTCTCGAA-GCA-A-CTTGAGATGTGC-CGCGGGAA-ATGTCGCACCTTCGCAGCTTCT 1343 | || | || | | | || | ||| | | || || || || | | | | || || || Sbjct 1082 CATC-CAAAAG-AGATCTCC-GTTGTTCTCAAGGAAACATTTCTC-CATCC-CAACTCCT 1136 Query 1344 TTCCTTTGCT-AAA-TCTCAGGTGGATTATATTCTTGGAGATAACCCGAGAGCTACCAGC 1401 ||| || ||| || ||||||||||| ||||| ||||| ||||| ||||| || || Sbjct 1137 AGA-TTT-CTCAAAATCACAGGTGGATTACATTCTCGGAGACAACCCTAGAGCGACAAGT 1194 Query 1402 TACATGGTTGGTTATGGTA-ACAATT-TCCCTCAGAGA-GTTCACCA-CAGAGGCTCTTC 1457 |||||||| || || || | | || | ||| | || | ||||| || | | || || || Sbjct 1195 TACATGGTCGGATACGG-AGAGAACTATCCA-C-GACAAGTTCATCATC-GTGGTTCGTC 1250 Query 1458 CATCGTCTC-TGTCAAGGTGGACCGTACATTT-GTCACCTGCCGAGGTGGATATGCCACT 1515 || ||||| | |||| || || | | | || || || ||||| || || || ||||| Sbjct 1251 TATTGTCTCCT-TCAATGTCGATCAAA-AGTTCGTGACTTGCCGTGGCGGTTACGCCACA 1308 Query 1516 TGGTTCAGCCGTAAAGGCAGTGACCCGAACCTTCTCACTGGTGCTATTGTCGGTGG-CCC 1574 ||||| ||||| ||||| || || ||||| || | || || ||||| || ||||| ||| Sbjct 1309 TGGTTTAGCCGCAAAGGAAGCGATCCGAATGTTTTAACCGGAGCTATAGTGGGTGGACCC 1368 Query 1575 TGATGCTTACGACAATTTCGCTGAC-AG-GAGAGATAACTATGAGCAGACTGAGCCTGCT 1632 || || ||||| || ||||||||| | | | || || |||||||| || || || || Sbjct 1369 -GACGCATACGATAACTTCGCTGACCAACG-G-GACAATTATGAGCAAACCGAACCAGCA 1425 Query 1633 ACTTACAACAATGCACCACTCCTTGGTGT 1661 ||||||||||| || ||||| |||||||| Sbjct 1426 ACTTACAACAACGCGCCACTTCTTGGTGT 1454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100329705330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5