BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64400.1
Length=2304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474909 jgi|Araly1|474909|fgenesh2_kg.2__39__AT1G64400.1 3494 0.0
> Ahg474909 jgi|Araly1|474909|fgenesh2_kg.2__39__AT1G64400.1
Length=2272
Score = 3494 bits (1892), Expect = 0.0
Identities = 2153/2280 (94%), Gaps = 14/2280 (1%)
Strand=Plus/Plus
Query 25 TCTACTTGCTCCTTTTACATTTCAACGAACAAAACACATGTATACATAGAAAGAAACGCA 84
|||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 1 TCTAATTGCTTCTTTTACATTTCAACGAACAAAACAGATATATACATAGAAAGAAACACA 60
Query 85 AATACGCAGATATAATAAATGGCGACTGGTCGATACATCGTTGAGGTTGAGAAGGGAAAG 144
||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 61 GATACGCAGATATAGTAAATGGCGACTAGTCGATACATCTTTGAGGTTGAGAAGGGAAAA 120
Query 145 CAAGGCGTTGATGGAGGAAGTCCATCGGTCGGTCCAGTGTACCGGAGTATCTATGCTAAA 204
|||||||| ||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 121 CAAGGCGTCCATGGAGGAAGTCCATCGGTCGGTCCGGTTTACCGGAGTATCTACGCTAAA 180
Query 205 GACGGTTTTCCTGAACC-GCCTGATGATCTCGTCAGTGCATGGGATATTTTCCGTTTATC 263
| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 181 GGCGGTTTTCCAGAACCGGCC-GATGATCTCGTCAGTGCATGGGATATTTTCCGATTATC 239
Query 264 TGTGGAGAAATCTCCAAATAATCCTATGCTTGGTCGTAGAGAAATAGTTGATGGAAAAGC 323
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTGAAGAAATCTCCAGATAATCCTATGCTTGGTCGTAGAGAAATAGTTGATGGAAAAGC 299
Query 324 TGGGAAATATGTATGGCAAACTTACAAAGAAGTACATAATGTAGTGATTAAGCTTGGAAA 383
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 300 TGGGAAATATATATGGCAAACTTACAAAGAAGTATATGATGTAGTGATTAAGCTTGGAAA 359
Query 384 CTCTATCAGAACTATTGGAGTTGGAAAAGGAGATAAATGCGGTATTTATGGCGCCAATAG 443
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CTCTATCAGAACTATTGGAGTTGGAAAAGGAGCGAAATGCGGTATTTATGGCGCCAATAG 419
Query 444 TCCTGAATGGATTATAAGCATGGAGGCTTGCAATGCTCATGGACTCTACTGTGTACCTTT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCCTGAATGGATTATAAGCATGGAGGCTTGCAATGCTCATGGACTCTACTGTGTACCTTT 479
Query 504 ATATGACACTCTAGGTGCTGGAGCAATAGAATTCATCATTTGTCATGCTGAGGTCTCACT 563
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 ATATGACACTCTAGGTGCTGGAGCAATAGAATTCATCATTTGTCATGCAGAAGTCTCACT 539
Query 564 TGCTTT-TGCTGAGGAGAACAAGATTTCTGAGTTATTGAAGACAGCTCCAAAATCAACTA 622
||||| | |||||||||| || || |||||||||||| ||||||||||||||||||||
Sbjct 540 CGCTTTCT-CTGAGGAGAAAAAAATCTCTGAGTTATTGTTGACAGCTCCAAAATCAACTA 598
Query 623 AATATTTGAAGTATATTGTGAGCTTTGGTGAGGTTACAAATAATCAGAGAGTAGAAGCTG 682
|||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 599 GATATTTGAAGAATATTGTGAGCTTTGGTGAGGTTACAAATGGTCAAAGAGCAGAAGCTG 658
Query 683 AGAGGCACAGATTAACAATATATTCATGGGACCAATTCTTGAAGCTAGGCGAGGGTAAAC 742
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 AGAGGCATGGATTAACAATATATTCATGGGACCAATTCTTGAAGCTAGGTGAGGGTAAAC 718
Query 743 ATTATGAATTACCAGAGAAGAGGAGAAGCGATGTTTGCACCATAATGTATACAAGTGGCA 802
|||||||||||||||||||||| || |||||| |||||||||| ||||||||||||||||
Sbjct 719 ATTATGAATTACCAGAGAAGAGAAGCAGCGATATTTGCACCATCATGTATACAAGTGGCA 778
Query 803 CAACTGGTGATCCTAAAGGAGTATTGCTTACAAATGAGAGCATTATTCATCTCCTTGAAG 862
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 779 CAACTGGTGATCCTAAAGGAGTCTTGCTTACAAATGAGAGCATTATCCATCTACTTGAAG 838
Query 863 GTGTTAAAAAATTGCTTAAAACTATTGATGAAGAGTTAACCAGTAAAGATGTATATCTCT 922
|||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 839 GTGTTAAAAAATTGCTTAAATCTATAAATGAAGAGTTAACCAGTAAAGATGTTTATCTCT 898
Query 923 CATATCTACCTCTGGCTCATATCTTCGATCGTGTGATTGAGGAGCTGTGTATTTATGAAG 982
||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct 899 CATATCTACCTCTGGCTCATATCTTCGATCGCGTGATTGAGGAGCTGTGTATATCTGAAG 958
Query 983 CAGCCTCTATCGGATTCTGGCGAGGGGATGTTAAGATATTGATAGAAGACATTGCTGCAT 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CAGCCTCTATCGGATTCTGGCGAGGGGATGTTAAGATATTGATAGAAGACATTGCTGCAT 1018
Query 1043 TGAAACCGACTGTTTTCTGCGCTGTTCCTCGCGTTCTAGAGAGAATATACACCGGTCTTC 1102
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1019 TGAAACCGACTGTTTTCTGCGCTGTTCCTCGCGTGCTAGAGAGAATTTACACCGGTCTTC 1078
Query 1103 AGCAGAAACTTTCTGATGGTGGTTTTGTAAAGAAGAAATTATTCAACTTTGCATTCAAAT 1162
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1079 AGCAGAAACTTTCTGATGGTGGTTTCATAAAGAAGAAATTATTCAACTTTGCATTCAACT 1138
Query 1163 ACAAACATAAAAACATGGA-GAAAGGGCAGCCTCATGAACAAGCATCTCCAATAGCTGAC 1221
||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1139 ACAAACATAAAAACATG-ACGAAAGGGCAGCCTCATGAACAAGCATCTCCAATGGCTGAC 1197
Query 1222 AAAATTGTATTTAAAAAGGTAAAAGAAGGGTTGGGAGGAAACGTGCGTCTTATCCTCTCA 1281
| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 AGAGTTGTATTTAAAAAGGTAAAAGAAGGGTTGGGAGGAAACGTGCGTCTGATCCTCTCA 1257
Query 1282 GGAGCAGCTCCTCTTGCAGCTCACATCGAATCTTTCCTTCGAGTTGTCGCGTGTGCTCAT 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGAGCAGCTCCTCTTGCAGCTCACATCGAATCTTTCCTTCGAGTTGTCGCGTGTGCTCAT 1317
Query 1342 GTTTTGCAAGGATACGGTCTAACAGAGAGTTGTGGTGGGACTTTTGTGTCCATTCCAAAC 1401
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1318 GTTTTGCAAGGATACGGTCTAACAGAGAGTTGTGGTGGCACTTTTGTGTCCATTCCAAAT 1377
Query 1402 GAGCTTTCAATGCTTGGAACGGTTGGTCCACCGGTTCCAAACGTTGACATAAGGCTAGAG 1461
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1378 GAGCTTGCAATGCTTGGAACGGTTGGTCCACCGGTTCCTAACGTTGACATAAGGCTCGAG 1437
Query 1462 TCAGTTCCAGAGATGGGTTATGACGCTCTTGCAAGCAATCCACGTGGAGAGATTTGCATC 1521
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1438 TCAGTTCCAGAGATGGGTTATGACGCTCTTGCAAGCAACCCACGTGGAGAGATTTGCATC 1497
Query 1522 AGGGGAAAGACTTTGTTCTCTGGATACTACAAACGTGAAGATCTCACTCAAGAAGTCTTC 1581
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1498 AGAGGAAAGACTTTGTTCTCTGGATATTACAAACGTGAAGATCTCACTCAAGAAGTCCTC 1557
Query 1582 ATTGATGGATGGCTTCACACTGGTGATGTCGGTGAGTGGCAACCAGATGGAGCCATGAAG 1641
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1558 ATTGATGGTTGGCTTCATACTGGTGATGTTGGTGAGTGGCAACCAGATGGAGCCATGAAG 1617
Query 1642 ATCATCGACCGTAAGAAGAACATCTTTAAACTGTCTCAAGGAGAATACGTTGCCGTTGAG 1701
|| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1618 ATAATCGATCGCAAGAAGAACATCTTTAAACTGTCTCAAGGAGAATACGTTGCGGTTGAG 1677
Query 1702 AACTTGGAGAACATATACAGTCATGTCGCCGCCATTGAATCGATATGGGTATATGGAAAC 1761
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1678 AACTTGGAGAACATATACAGTCATGTCGCGGCCATTGAATCGCTATGGGTATATGGAAAC 1737
Query 1762 AGCTATGAGTCTTACTTAGTGGCTGTGGTATGTCCAAGCAAGATCCAGATCGAGCATTGG 1821
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1738 AGCTATGAGTCTTACTTAGTGGCTGTGGTATGTCCAAGCAAGATTCAGATTGAACATTGG 1797
Query 1822 GCCAAAGAACACAAAGTTTCAGGAGACTTTGAGTCTATCTGCCGAAACCAAAAGACTAAA 1881
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1798 GCCAAAGAACACAGTGTTTCAGGAGACTTTGAGTCTATCTGTCGAAACCAAAAGACTAAA 1857
Query 1882 GAGTTTGTCCTTGGAGAGTTCAACAGAGTAGCCAAAGACAAAAAGCTGAAGGGATTTGAG 1941
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GAGTTTATCCTTGGAGAATTCAACAGAGTAGCCAAAGACAAAAAGCTGAAGGGATTTGAG 1917
Query 1942 CTGATCAAAGGTGTTCATTTGGACACAGTCCCGTTCGACATGGAAAGAGATCTCATCACT 2001
|||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1918 CTGATCAAAGATGTTCATTTGGACACGGTACCGTTCGACATGGAAAGAGATCTCATCACA 1977
Query 2002 CCTTCTTACAAGATGAAAAGACCTCAGCTTCTCAAGTACTATCAGAAAGAGATTGATGAA 2061
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1978 CCTTCTTACAAGAAGAAAAGGCCTCAGCTTCTCAAGTACTATCAGAAAGAGATTGATAAA 2037
Query 2062 ATGTATAAGAAAAACAGAGAAGTGCAGCTACGAGTGTAAAGAAAGGAAGTTGTTGGACAA 2121
|||||||| ||| ||| | || || |||| |||||||||||||||||||||||||||||
Sbjct 2038 ATGTATAACAAAGACAAACAATTGAAGCTTTGAGTGTAAAGAAAGGAAGTTGTTGGACAA 2097
Query 2122 ATCTCTCAGGTTTATATGTTTCTCTTATCACTCTAATTCATATTGTTATATGTCTCT--A 2179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2098 GTCTCTCAGGTTTATATGTTTCTCTTATCACTCTAATTCATATTGTTATATGTCTCTCTA 2157
Query 2180 TGCTGTGTTAATATCGAAGGGtttttttCTTTCTTTGCTTGTAAACAACCAAATCTTTT- 2238
|| |||||||||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 2158 TGTTGTGTTAATATCGAAGAGTTTTTTT-TTT----GCTTGTAAACAACCAAATCTTTTT 2212
Query 2239 ATTGTTCTTAACATTCTCCTGTTTTATGTATTTGTATTGATATTTTAATAAAGTTCTCTG 2298
||||| || |||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2213 ATTGTACTCAACATTATCCTGTTTTGTGTATTTGTATTGATATTTTAATAAAGTTCTCTG 2272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86769578110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5