BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64500.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474897 jgi|Araly1|474897|fgenesh2_kg.2__27__AT1G64500.1 1930 0.0
> Ahg474897 jgi|Araly1|474897|fgenesh2_kg.2__27__AT1G64500.1
Length=1263
Score = 1930 bits (1045), Expect = 0.0
Identities = 1202/1274 (94%), Gaps = 25/1274 (2%)
Strand=Plus/Plus
Query 1 ACAAAGAAAACTGAACAAAATTTGAAGAGTTATTAAAATGGGGTGTACATCTTCCAAGCA 60
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1 ACAAAGAAAACTGAACAAAATTTGAAGA---ATTAAAATGGGGTGTACATCGTCCAAGCA 57
Query 61 AGCAAAAGCTAACGTCGTCGCCGACGTTTACAAACCACCGCCGTCTAGTTTCGCGGTGTT 120
|| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 58 AGTGAAAGCTAACGTCGTCGCCGATGTTTACAAACCACCGCCGTCAAGTTTCGCCGTGTT 117
Query 121 TGATGTCAACGCCATCCAAGAGCCATGGCTAAAATTTGAACATGAAGATGATGAGAAACC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGATGTCAACGCCATCCAAGAGCCATGGCTAAAATTTGAACATGAAGATGATGAGAAACC 177
Query 181 GCCACGCTCCACCGTCTTCGAC-CGTCTCGACGAGgatgatgatgatgatgatgatgatg 239
|||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 178 GCCACGCTCCACCGTCTTCGACAC-TCTCGAGGAGGATGATGATGATGATGATGATGATG 236
Query 240 gtgatgaCGCTCCTAAAACATGGGAAGAAGTCAGCAAATCTCTAGAAACTAAACTTAAAC 299
| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 237 ---A---CGCTCCGAAAACATGGGATGAAGTCAGCAAATCTCTAGAAACTAAACTTAAAC 290
Query 300 CTGCCGCCGTTAAACCGCCGGAAGTAGACTCTGTTAAACCTCCGGCGACTCCTCCACGGC 359
| ||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||| |
Sbjct 291 CCGCCGCCGATAAACCGCCGGAAGTTGTCTCCGTTAAACCTCCGGCGACTCCTCCACGAC 350
Query 360 GGCTTCCGCGGAAGAGCGCATCGTTCCACACACTGGACGAGCTTGAAGTGAGGGCCAAAA 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 351 GGCTTCCGCGGAAGAGCGCATCGTTCCACACACTGGACGAGCTTGAAACCAGGGCCAAAA 410
Query 420 GA-AGCATCGCCGCGCAAATCCCGACGACAATGGTTAAGCTTAAGAGAACCGAGTCGATG 478
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 411 GACAA-ATCGCCGCGCAAATCCCGACGACGGTGGTTAAGCTTAAGAGAACCGAGTCGATG 469
Query 479 TCCAAGCTAAGACCCGAGTCAGATGATCGAACCGAGTCCACTCAGTCGTCCTACTCGGGG 538
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 470 TCCGAGCTAAGACCCGAGTCAGATGATCGGACCGAGTCCACTCAGTCGTCCTACTCAGGG 529
Query 539 CCTCGGTCAGTGAAGGAGAACATATTCGTCAAGAGAGACAGAGAACGGAGGGAGAAAGAA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CCTCGGTCAGTGAAGGAGAACATATTCGTCAAGAGAGACAGAGAACGGAGGGAGAAAGAA 589
Query 599 GGGAACAAGAAGCCGGTGATGAACTGGGACCCACTTAGGGAGTTCCCGGAGAAGTGTCCG 658
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GGGAACAAGAAACCGGTGATGAACTGGGACCCACTTAGGGAGTTCCCGGAGAAGTGTCCT 649
Query 659 CCGGGAGGAGGGGAAGGTTTGATTGTCTACACGACGTCGTTGCAAGGAGTGCGTCGCACG 718
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 650 CCGCGAGGAGGGGAAGGTTTGGTTGTCTACACGACGTCGTTGCAAGGAGTGCGTCGCACG 709
Query 719 TACGAGGATTGTATGCGTGTGAGGGCCATCATGGAGCAGCAAGGAGTTGTGGTGGACGAG 778
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 710 TACGAGGATTGCATGCGTGTGAGGGCCATCATGGAGCAGCAAGGAGTGGTGGTGGACGAG 769
Query 779 AGGGACGTGTCTTTAGACGCCGGAGTCTTGAGCGAGCTTAAGGAGCTTCTCCAAGACGAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AGGGACGTGTCTTTAGACGCCGGAGTCTTGAGCGAGCTTAAGGAGCTTCTCCAAGACGAA 829
Query 839 GCATCAGTGGCGCCGCCGCGAGTGTTTGTGAAAGGGAGGTACTTGGGAGGAGCAGCGGAA 898
||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 830 GCATCGGTGGCTCCGCCGAGAGTGTTTGTGAAAGGGAGGTACTTGGGAGGAGCGGCGGAA 889
Query 899 GTGACAGCGATGAATGAGAACGGGAAGTTAGGGAGGGTGTTGCGGTGGGCACGTGTGGAG 958
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 890 GTGACAGCGATGAATGAGAACGGGAAGTTAGGGAGGGTGTTGAGGTGGGCACGTGTGGAG 949
Query 959 AGAGTAGGGGAGGAAGGGAGGCTCACGTGTGAAGGGTGCGGAGGAGCGAGGTGGTTGCCT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGAGTAGGGGAGGAAGGGAGGCTCACGTGTGAAGGGTGCGGAGGAGCGAGGTGGTTGCCT 1009
Query 1019 TGTTTCGAGTGCGGCGGAAGCTGTAAGGTGGCGGCGGTTGGGGCGGCCAAAGGTGAAAGG 1078
||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1010 TGTTTTGAATGCGGCGGAAGCTGTAAGGTGGCTGCGGTTGGGGCGGCTAAAGGTGAAAGG 1069
Query 1079 TGGGAGAGGTGTGTCAAGTGTAATGAGAATGGATTGATTCGTTGTCCCGTGTGTTTTGTT 1138
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1070 TGGGAGAGGTGTGTCAAGTGTAATGAGAATGGATTGATTCGTTGTCCCGTTTGTTTTGTT 1129
Query 1139 AATTAAGAACATTA-T-TAGTTTACACAAGCAAATAGAGGTGTGTCAAATATACTTTGTC 1196
|||||||||||| | | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1130 AATTAAGAACATGAATATAGTTTACACAAGCAAATAGAGGTGTGTCAAATATACGTTGTC 1189
Query 1197 CCGTTTGTTTTGTTATATGTATGTGACACGTTTGATT-TT-------GTGG-AA-TTGAA 1246
||||||| ||||||||||||| |||| |||||||| || |||| || |||||
Sbjct 1190 TTGTTTGTTCTGTTATATGTATGCGACAGGTTTGATTATTTCTTAATGTGGCAAATTGAA 1249
Query 1247 AATGATTTGAAACT 1260
||||||||||||||
Sbjct 1250 AATGATTTGAAACT 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5