BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64510.1 Length=864 Score E Sequences producing significant alignments: (Bits) Value Ahg474896 jgi|Araly1|474896|fgenesh2_kg.2__26__AT1G64510.1 1085 0.0 > Ahg474896 jgi|Araly1|474896|fgenesh2_kg.2__26__AT1G64510.1 Length=777 Score = 1085 bits (587), Expect = 0.0 Identities = 707/760 (93%), Gaps = 27/760 (4%) Strand=Plus/Plus Query 52 TGGCGTCTTCGCTGTGTGTATCAAATTCCACAATTTGCCCTCTGCCTAATGTATCTTCGC 111 ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 7 TGGCGTCTTCGCTATGTCTATCGAATTCCACAATTTGCCCTCTGCCTAATGTATCTTCGC 66 Query 112 AGCCGCTGCTATCATTCTCCCACTCTCTCAGGCCATTCATTTCCAAGTCGAAACCTATGT 171 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 67 AGCCGCTGCTCTCATTCTCCCACTCTCTCAGGCCATTCATTTCCAAGTCGAAACCTGTTT 126 Query 172 GTGCCTCG--------ATA-CAGAAGAGAGATGGCTCTCAATTTGTGGTGAAATCTCAGG 222 |||||||| | | ||||||||||||||||||||||||||||| |||||||||| Sbjct 127 GTGCCTCGCTACAACAACAGCAGAAGAGAGATGGCTCTCAATTTGTGGTAAAATCTCAGG 186 Query 223 CTCTTGACTTCTCTGGAACTTTCTTTGAAGGTGGATTCGGGTCGGATGATGACCCGACTT 282 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 187 CTCTTGATTTCTCCGGAACTTTCTTTGAAGGTGGATTCGGGTCGGATGATGACCCGACTT 246 Query 283 CTCCTTCCGGGTCGGGAGTCTCAACTGCCCTTGAAGACAAACCGGAACCTCAGTGCCCAC 342 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 247 CTCCTCCCGGGTCGGGAGTCTCAACTGCCCTTGAGGACAAACCGGAACCTCAGTGCCCAC 306 Query 343 CTGGGCTCAGGCAGTACGAAACAATGGCGGTTTTGAGACCAGACATGTCTGAAGATGAAC 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 CTGGGCTCAGGCAGTACGAAACAATGGCGGTTTTGAGACCAGACATGTCTGAAGATGAAC 366 Query 403 GGCTTGGTCTTACCCAGAAATACGAAGAGTTGCTTGTGGCAGGAGGTGGAATGTATGTGG 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 GGCTTGGTCTTACCCAGAAATACGAAGAGTTGCTTGTGGCAGGAGGTGGAATGTATGTGG 426 Query 463 AAGTGTTTAACAGAGGAGTGATTCCGTTGGCTTACAGCATAAGAAAGAAGAACAAAGCTG 522 ||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||| Sbjct 427 AAGTGTTCAACAGAGGAGTGATTCCATTAGCTTACAGCATTAGAAAGAAGAACAAAGCTG 486 Query 523 GAGAAACCAACACTTACTTGGATGGAATCTACCTTCTCTTCACTTACTTCACCAAACCCG 582 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 487 GAGAAACCAACACTTACCTGGATGGAATCTACCTTCTCTTCACTTACTTCACCAAACCCG 546 Query 583 AATCAATAGTTCCACTCGAGACCGTTCTCACTGCCGACGATGACATTATCCGATCATCTT 642 | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 AGTCAATAACTCCGCTCGAGACCGTTCTCACTGCCGACGATGACATTATCCGATCATCTT 606 Query 643 CCTTCAAGATAAAGAAGAGGAAGTACAACTGAAGA--CCATGAACATTGTGTATGTGAGA 700 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 607 CCTTCAAGATAAAGAAGAGGAAGTACAACTGAAGAGACCATGAACATTGTGTATGTG--- 663 Query 701 AAAATGTCAGATtctttttttgtttctttgtaagaacaaaagtaaatctatcttt-tttg 759 || | ||| |||| ||||||||| |||||||||||||||||||||||| |||| Sbjct 664 ----TG--A-ATT-TTTTG--GTTTCTTTGGAAGAACAAAAGTAAATCTATCTTTATTTG 713 Query 760 tatctttttttgtGCATTGCTCTGCTTTCTTA-TGTAACT 798 |||||||||| |||||||||||| ||||| | ||||||| Sbjct 714 GATCTTTTTTTATGCATTGCTCTGTTTTCT-ACTGTAACT 752 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31985127363 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5