BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64520.1 Length=1079 Score E Sequences producing significant alignments: (Bits) Value Ahg474895 jgi|Araly1|474895|fgenesh2_kg.2__25__AT1G64520.1 1740 0.0 > Ahg474895 jgi|Araly1|474895|fgenesh2_kg.2__25__AT1G64520.1 Length=1081 Score = 1740 bits (942), Expect = 0.0 Identities = 1038/1084 (96%), Gaps = 8/1084 (1%) Strand=Plus/Plus Query 1 AAGCCAGTTCTCGGAGCAATCAAATCTATAAGAAAAGAATCGTCGCCGGTGAAGAGAAA- 59 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 AAGCCAGTTCTCGGAGCAATCAAATCTATAAGAAAGGAATCGTCGCCGGTGAAGAGAAAG 60 Query 60 A-A-ACCATAGAAGCGATGGATCCGCAGCTAACTGAAGTTTCACAGCAGTTCGAGAGATT 117 | | | | | |||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 61 AGAGAGC-T-CAAGCGATGGATCCGCAGCTAACGGAAGTTTCACAGCAGTTCGAGAGGTT 118 Query 118 CAAGGCGGCGTTTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAA 177 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 119 CAAGGCGGCGTTTGCGAGGAAGGATTACAATAGCTGTAGTGATCTGTTGTCTCAGCTTAA 178 Query 178 GGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTAATGCAGC 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTAATGCAGC 238 Query 238 CAAGGAATTGACTATTGCAAGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAAC 297 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 239 CAAGGAATTGACTATTGCTAGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTAAAAAC 298 Query 298 CGAGGATCAAGATGCTTTTGAGAGAGATTTCTTCCAGCTGAAACCTTACTATGTGGATGC 357 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 299 CGAGGATCAAGATGCTTTTGAGAGAGATTTCTTCCAGTTGAAACCTTACTATGTGGATGC 358 Query 358 CAGGAACCGTATT-CCTCAGTCTCCACAGGAGAATCTTATCCTGGGTCTTAACCTTCTGA 416 ||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||| Sbjct 359 CAGGAACCGTATTCCCTCA-TCCCCACAGGAGAATCTTATCCTGGGTCTCAACCTTCTGA 417 Query 417 GGCTGCTGGTACAAAATAGAATTGCTGAATTCCACACCGAGCTTGAATTACTTTCATCAG 476 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 418 GGCTGCTTGTACAAAATAGAATTGCTGAATTCCACACCGAGCTTGAATTACTTTCGTCAG 477 Query 477 CTACACTAGAGGATCCTTGCATCAAGCATGCAGTAGAGCTTGAGCAATCCTTCATGGAGG 536 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 478 CTACACTGGAGGATCCTTGCATCAAGCATGCAGTAGAGCTTGAGCAGTCCTTCATGGAGG 537 Query 537 GTGCCTATAACCGTGTGTTGAGTGCTAGACAGACCGCGCCTGATGCAACTTACGTCTATT 596 |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 538 GTGCCTATAATCGTGTGTTGAGTGCTAGACAGACTGCGCCTGATGCAACTTATGTCTATT 597 Query 597 TCATGGATCTCTTGGCAAAGACCATAAGAGATGAAATAGCTGGATGCAGCGAGAAAGCTT 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TCATGGATCTCTTGGCAAAGACCATAAGAGATGAAATAGCTGGATGCAGCGAGAAAGCTT 657 Query 657 ATGATTATGTCTCTATCAGCGATGCCCGGCAGATGTTGTTGTTCTCTTCTGATCAAGAAC 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ATGATTATGTCTCTATCAGCGATGCCCGGCAGATGTTGTTGTTCTCTTCTGATCAAGAAC 717 Query 717 TCTTAACCTATGTCACAGATGAGCATCCTGAGTGGGAAGTGAAGGAAGGGTTTGTTGTCT 776 ||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 718 TCTTAACCTATGTCAAAGAGGAGCACCCTGAGTGGGAAGTGAAGGAAGGGTTTGTTGTCT 777 Query 777 TCCAGAAAGCCAAAGAAACTGCACCGTGCAAAGAGATTCCGTCTCTGCAACTCATCAACC 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TCCAGAAAGCCAAAGAAACTGCACCGTGCAAAGAGATTCCGTCTCTGCAACTCATCAACC 837 Query 837 AGACTCTAAGCTACGCCAGAGAGCTGGAGCGTATCGTGTAAGATTCGACTTTTCTCACTG 896 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 838 AGACTCTAAGCTACGCCAGAGAGCTGGAGCGTATCGTGTAAGATCCGACTTTCCTCACTG 897 Query 897 CTTGTCTCTTCTCTTCTG-TTATGTTCCTGGAAATCTCTGGGTCAGAAAACTTTGTTATC 955 ||| |||||||||||| ||||||||||||||||||| ||||| ||||| ||||||| Sbjct 898 CTTTTCTCTTCTCTTCCAATTATGTTCCTGGAAATCTCCGGGTCCTAAAACGTTGTTATA 957 Query 956 ATGTAATGACCGATATTGAGCGACTCAGTATTTTCTCCGGGTCAATGAGACTTTGTTGTG 1015 |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| | Sbjct 958 ATGTAATGACTGATATTGAGGGACTCAGTATTTTCTCCGGGTCAATTAGACTTTGTTGCG 1017 Query 1016 ATATCAATCTGTTTTTCCATATCCTTTTACGTTATATTCTATTGTTTAGTGTTCACTCGT 1075 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1018 ATATCAATCTGTTCTTCCATATCATTTTACGTTATATTCTATTGTTTAGTGTTCACTCGT 1077 Query 1076 TTTC 1079 |||| Sbjct 1078 TTTC 1081 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40181554518 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5