BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64710.1 Length=1523 Score E Sequences producing significant alignments: (Bits) Value Ahg314969 jgi|Araly1|314969|fgenesh1_pm.C_scaffold_2000002 1772 0.0 Ahg337905 jgi|Araly1|337905|fgenesh1_pg.C_scaffold_2000004 806 0.0 > Ahg314969 jgi|Araly1|314969|fgenesh1_pm.C_scaffold_2000002 Length=1164 Score = 1772 bits (959), Expect = 0.0 Identities = 1098/1162 (94%), Gaps = 21/1162 (2%) Strand=Plus/Plus Query 142 ATGGAAACACAAGGCAAAGTAATCACTTGCAAAGCTGCTGTGGCATGGGGAGCTGGAGAG 201 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGAAACACAAGGCAAAGTAATCACTTGCAGAGCTGCTGTGGCATGGGGAGCTGGAGAA 60 Query 202 CCTCTAGTAATGGAAGATGTAAAAGTGGATCCTCCTCAAAGATTGGAAGTGAGAATTCGA 261 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 CCTCTAGTGATGGAAGATGTAAAAGTGGATCCTCCTCAAAGATTGGAAGTGAGACTTCGA 120 Query 262 ATCCTCTTCACTTCCATCTGTCACACTGATCTCAGCGCATGGAAAGGCGAGAACGAGGCT 321 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 121 ATCCTCTTCACTTCCATCTGTCACACTGATCTTAGCGCATGGAAAGGCGAGAACGAGTCT 180 Query 322 CAGCGAGCATACCCTCGAATCCTTGGCCATGAGGCAGCAGGGATAGTGGAGAGCGTAGGG 381 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 CAGCGAGCATACCCTCGAATCCTTGGCCATGAGGCGGCAGGGATAGTGGAGAGCGTAGGG 240 Query 382 GAAGGTGTGGAAGAGATGATGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGT 441 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAAGGAGTGGAAGAGATGAAGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGT 300 Query 442 GGAGACTGCAGAGTGTGCAAGCGAGACGGAGCCAATCTGTGCGAGAGATTCCGAGTGGAT 501 ||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 301 GGAGATTGCAGAGTCTGCAAGCAAGACGAAGCCAATCTGTGCGAGAGATTCCGAGTGGAT 360 Query 502 CCGATGAAGAAGGTGATGGTAACCGATGGAAAGACCAGATTCTTCACCAGCAAAGACAAC 561 ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| Sbjct 361 CCGATGAAGAAGGTGATGGCAACCGATGGCAAGACCAGATTCTTCACAAGCAAAGACAAC 420 Query 562 AAACCAATCTACCATTTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCG 621 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAACCCATCTACCATTTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCG 480 Query 622 GCCTGCGTGCTCAAGGTGGACCCTCTGTTTCCTCTGGAGAAGATAAGCCTCCTCAGCTGC 681 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCTTGCGTGCTCAAGGTGAACCCTCTGTTTCCTCTGGAGAAGATAAGCCTCCTCAGCTGC 540 Query 682 GGTGTCTCCAC------------------T---GGAGTCGGTGCGGCGTGGAATGTGGCT 720 ||||||||||| | ||||||||||||||||||||||||||| Sbjct 541 GGTGTCTCCACTGATAAGTGTTTATGGAATGAAGGAGTCGGTGCGGCGTGGAATGTGGCT 600 Query 721 GATATTCAACCTGCCTCCACCGTCGCTATTTTTGGACTTGGCGCTGTTGGACTTGCCGTG 780 ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 601 GATATTCAACCTGGCTCCACCGTCGCTATATTTGGACTTGGCGCTGTTGGACTTGCCGTG 660 Query 781 GCTGAAGGTGCAAGAGCCAGAGGAGCCTCTAAAATCATTGGGATCGACATCAACCCTGAC 840 |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 661 GCTGAAGGTGCAAGAGTCAGGGGAGCCTCTAAAATCATTGGGATCGACGTCAACCCTGAC 720 Query 841 AAGTTCCAACTAGGCAGAGAAGCAGGGATTAGTGAATTCATAAATCCAAAGGAGAGTGAC 900 ||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 721 AAGTTCCCATTAGGCAGAGAAGCAGGGATCAGTGAATTCATAAATCCAAAGGAGAGTGAC 780 Query 901 AAGGCAGTTCATGAGAGAGTAATGGAGATAACAGAGGGAGGAGTGGAGTACAGCTTCGAG 960 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| Sbjct 781 AAGGCAGTTCATGAGAGAGTAAGGGAGATAACAGAGGGAGGAGTGGAGTGCAGCTTTGAG 840 Query 961 TGTGCAGGAAGTATAGAAGCACTTAGAGAAGCCTTTCTGTCTACAAACTCAGGAGTGGGA 1020 ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 841 TGTGCGGGAAGCATAGAAGCACTTAGAGAAGCCTTTCTGTCTACTAACTCAGGAGTGGGA 900 Query 1021 GTGACTGTCATGCTGGGCGTTCACGCAAGCCCACAGCTTCTCCCTATCCATCCCATGGAG 1080 ||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 901 GTGACAGTGTTGCTGGGCGTTCACGCAAGCCCACAGCTTCTTCCTATCCATCCCATGGAG 960 Query 1081 CTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACCCAA 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACCCAA 1020 Query 1141 TTACCCTTTTTCATCACCCAGTGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATCTCT 1200 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TTACCCTTTCTCATCACCCAATGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATCTCT 1080 Query 1201 CACCAGCTTCCCTTCCACGATATCAACGAAGCCATGCAGCTGCTTCACCAAGGCAAAGCT 1260 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1081 CACCAGCTTCCATTCCACGATATCAACAAAGCCATGCAGCTGCTTCACCAAGGCAAAGCT 1140 Query 1261 CTTCGTTGCCTTCTCCACCTCT 1282 ||||||||||||||| ||||| Sbjct 1141 ATTCGTTGCCTTCTCCGCCTCT 1162 > Ahg337905 jgi|Araly1|337905|fgenesh1_pg.C_scaffold_2000004 Length=927 Score = 806 bits (436), Expect = 0.0 Identities = 482/505 (95%), Gaps = 0/505 (0%) Strand=Plus/Plus Query 778 GTGGCTGAAGGTGCAAGAGCCAGAGGAGCCTCTAAAATCATTGGGATCGACATCAACCCT 837 ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| Sbjct 421 GTGGCTGAAGGTGCAAGAGTCAGGGGAGCCTCTAAAATCATTGGGATCGACGTCAACCCT 480 Query 838 GACAAGTTCCAACTAGGCAGAGAAGCAGGGATTAGTGAATTCATAAATCCAAAGGAGAGT 897 |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 481 GACAAGTTCCCATTAGGCAGAGAAGCAGGGATCAGTGAATTCATAAATCCAAAGGAGAGT 540 Query 898 GACAAGGCAGTTCATGAGAGAGTAATGGAGATAACAGAGGGAGGAGTGGAGTACAGCTTC 957 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 541 GACAAGGCAGTTCATGAGAGAGTAAGGGAGATAACAGAGGGAGGAGTGGAGTGCAGCTTT 600 Query 958 GAGTGTGCAGGAAGTATAGAAGCACTTAGAGAAGCCTTTCTGTCTACAAACTCAGGAGTG 1017 |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 601 GAGTGTGCGGGAAGCATAGAAGCACTTAGAGAAGCCTTTCTGTCTACTAACTCAGGAGTG 660 Query 1018 GGAGTGACTGTCATGCTGGGCGTTCACGCAAGCCCACAGCTTCTCCCTATCCATCCCATG 1077 |||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 661 GGAGTGACAGTGTTGCTGGGCGTTCACGCAAGCCCACAACTTCTTCCTATCCATCCCATG 720 Query 1078 GAGCTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACC 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GAGCTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACC 780 Query 1138 CAATTACCCTTTTTCATCACCCAGTGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATC 1197 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 781 CAATTACCCTTTCTCATCACCCAATGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATC 840 Query 1198 TCTCACCAGCTTCCCTTCCACGATATCAACGAAGCCATGCAGCTGCTTCACCAAGGCAAA 1257 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 841 TCTCACCAGCTTCCATTCCACGATATCAACAAAGCCATGCAGCTGCTTCACCAAGGCAAA 900 Query 1258 GCTCTTCGTTGCCTTCTCCACCTCT 1282 ||| ||||||||||||||| ||||| Sbjct 901 GCTATTCGTTGCCTTCTCCGCCTCT 925 Score = 616 bits (333), Expect = 2e-175 Identities = 365/381 (96%), Gaps = 0/381 (0%) Strand=Plus/Plus Query 397 ATGATGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGTGGAGACTGCAGAGTG 456 |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 ATGAAGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGTGGAGATTGCAGAGTC 60 Query 457 TGCAAGCGAGACGGAGCCAATCTGTGCGAGAGATTCCGAGTGGATCCGATGAAGAAGGTG 516 ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 TGCAAGCAAGACGAAGCCAATCTGTGCGAGAGATTCCGAGTAGATCCGATGAAGAAGGTG 120 Query 517 ATGGTAACCGATGGAAAGACCAGATTCTTCACCAGCAAAGACAACAAACCAATCTACCAT 576 ||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||||| Sbjct 121 ATGGTAATTGATGGAAAGACCAAATTCTTCACAAGCAAAGACAACAAACCCATCTACCAT 180 Query 577 TTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCGGCCTGCGTGCTCAAG 636 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 TTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCGGCTTGCGTGCTCAAG 240 Query 637 GTGGACCCTCTGTTTCCTCTGGAGAAGATAAGCCTCCTCAGCTGCGGTGTCTCCACTGGA 696 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 241 GTGAACCCTCTGTTTCCTCTGGAGATGATAAGCCTCCTCAGCTGCGGTGTCTCCACTGGA 300 Query 697 GTCGGTGCGGCGTGGAATGTGGCTGATATTCAACCTGCCTCCACCGTCGCTATTTTTGGA 756 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 301 GTCGGTGCGGCGTGGAATGTGGCTGATATTCAACCTGGCTCCACCGTCGCTATATTTGGA 360 Query 757 CTTGGCGCTGTTGGACTTGCC 777 ||||||||||||||||||||| Sbjct 361 CTTGGCGCTGTTGGACTTGCC 381 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57021096765 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5