BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64720.1 Length=1577 Score E Sequences producing significant alignments: (Bits) Value Ahg924442 jgi|Araly1|924442|scaffold_200003.1 1677 0.0 > Ahg924442 jgi|Araly1|924442|scaffold_200003.1 Length=1192 Score = 1677 bits (908), Expect = 0.0 Identities = 1075/1152 (93%), Gaps = 25/1152 (2%) Strand=Plus/Plus Query 127 CCTCGGCTTCTCTGACCTTATAGTTTTTGTTGCGCCACTCTGGATTGCTGTGGCTGCCGG 186 ||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| Sbjct 53 CCTCGGCTTCTCTGACCTTTTAGTATTTGTTGCGCCACTCTGGATTGCTGTCGCTGCCGG 112 Query 187 TGTTTTGGTTGGTTGGGTTTGGAGGCCCAAGTGGGCTTATCTCGATTCTAAA--C-TCTT 243 ||||||||||||||| ||||||| |||||||||||||||||||| | ||| | |||| Sbjct 113 GGTTTTGGTTGGTTGGTTTTGGAGACCCAAGTGGGCTTATCTCGACACAAAACCCTTCTT 172 Query 244 GTCC-A--ATTCACCTAAATTCCTCAATCTTCAGCTTCCCACTTCCATCCTCAAAACTTC 300 ||| | |||||||||||| || || |||||||||||||||||||||| || || Sbjct 173 ATCCGATTCTTCACCTAAATT-CT---TC--AAGCTTCCCACTTCCATCCTCAAGACCTC 226 Query 301 TTCT--CA-CC--ACGTTAACCCCAGCCTTTCTTCCAAAGAGAAAACTGGGTTTGTAACG 355 |||| || || | || |||||| | | | ||||||||| |||||||||| ||| Sbjct 227 TTCTCACAGCCTTTC-TTCTCCCCAGGC-TGATGAGAAAGAGAAATCTGGGTTTGTTACG 284 Query 356 GACGATGATTTTAGGCATCTATGGAAGTTGGTTGAGGTCAAAGATGGCGGTCCTTG-TTG 414 |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 285 GACGATGATTTTAGGCATCTATGGAAGTTGGTTGAGGTCAAAGATGGCGG-CCCTGCTTG 343 Query 415 GATTCAAATGATGGACCGATCAACCCCAACCTTCTCATATCAAGCTTGGAGGCGAGATCC 474 |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 344 GATTCAGATGATGGACCGATCAACTCCTACCTTCTCATATCAAGCTTGGAGGCGAGATCC 403 Query 475 TGAGAATGGGCCTCCCCAGTACCGTAGCAGAACTGTGTTTGAGGATGCCACTCCCGAGAT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 404 TGAGAATGGGCCTCCCCAGTACCGTAGCAGAACTGTGTTTGAGGATGCCACTCCCGAGAT 463 Query 535 GGTCAGGGACTTCTTTTGGGATGATGAGTTCCGTTCCAAGTGGGATGATATGCTTTTGTA 594 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 GGTGAGGGACTTCTTTTGGGATGATGAGTTCCGTTCCAAGTGGGATGATATGCTTTTGTA 523 Query 595 TTCTTCTACTCTCGAGCGTTGCAAGGA-CACGGGCACTATGGTTGTGCAATGGGTGCGAA 653 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| | Sbjct 524 TTCTTCTACTCTCGAGCGTTGCAA-GAGCACGGGCACTATGGTTGTGCAATGGGTGCGCA 582 Query 654 AGTTCCCCTTCTTTTGTAGCGACAGGGAGTATATTATAGGCCGTCGTATATGGGATGCTG 713 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 583 AGTTCCCTTTCTTTTGTAGCGACAGGGAGTATATTATAGGCCGTCGAATATGGGATGCTG 642 Query 714 GCCGAGTCTTTTACTGCATTACTAAGGGAGTACAATACCCGTCTGTACCTAGACAAAACA 773 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 643 GCCGAGTCTTTTACTGCGTTACAAAGGGAGTACAATACCCGTCTGTACCTAGACAAAACA 702 Query 774 AGCCAAGGCGAGTCGACTTGTACTATTCAAGCTGGTGTATCCGTGCAGTTGAATCAAAAA 833 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 703 AGCCAAGGCGAGTCGACTTATACTATTCAAGCTGGTGTATCCGTGCAGTTGAATCAAAAA 762 Query 834 GAGGCGATGGTGAGATGACATCATGTGAGGTACTACTATTTCACCATGAAGATATGGGAA 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 GAGGCGATGGTGAGATGACATCATGTGAGGTACTACTATTTCACCATGAAGATATGGGAA 822 Query 894 TACCGTGGGAGATTGCAAAGCTTGGGGTGAGACAGGGTATGTGGGGTGCAGTCAAGAAGA 953 |||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| | Sbjct 823 TACCGTGGGAGATTGCAAAGCTCGGGGTGAGACAGGGGATGTGGGGTGCAGTGAAGAAAA 882 Query 954 TTGAGCCAGGCCTACGTGCATATCAGAGGGCTAAAGCAGCGGGAGCAGGTTTATCCCCGA 1013 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 883 TTGAGCCAGGCCTACGTGCATATCAGAGGGCCAAAGCAGCGGGAGCAGGTTTATCCCCAA 942 Query 1014 GTGCCATAATGGCTCACATCAACACCAAAGTGAGTGCAGAGGAGTTCATGAATGAGAGGG 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 943 GTGCCATAATGGCTCACATCAACACCAAAGTGAGTGCAGAGGAGTTCATGAATGAGAGGG 1002 Query 1074 GTTCGATAGCAGAGGTTACAGGAGACAAGCCGACGGGGAAAAACATACCAAAGATACTAG 1133 ||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 1003 ATTCGATAGCAGAGATTACTGGAGAGAAGCCGACAGGGAAAAACATACCAAAGATACTAG 1062 Query 1134 TGGTAGGAGGGGCGATTGCACTTGCATGTACATTGGACAAAGGGCTGTTGACAAAGGCGG 1193 |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| | Sbjct 1063 TGGTGGGAGGGGCGATTGCCCTTGCATGTACACTGGACAAAGGGCTGTTGACAAAGGCAG 1122 Query 1194 TGATATTCGGAGTAGCCAGAAGATTTGCAAGAATGGGAAAAAGGATGTAGGAGAGAGTGT 1253 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1123 TGATATTCGGAGTAGCCAGAAGATTTGCAAGAATGGGGAAAAGGATGTAGGAGAG--TGT 1180 Query 1254 ACATGTAAGTAG 1265 |||||||||||| Sbjct 1181 ACATGTAAGTAG 1192 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59077969995 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5