BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64740.1 Length=1652 Score E Sequences producing significant alignments: (Bits) Value Ahg475472 jgi|Araly1|475472|fgenesh2_kg.2__602__AT1G64740.1 2610 0.0 Ahg488873 jgi|Araly1|488873|fgenesh2_kg.6__2007__AT5G19780.1 1013 0.0 Ahg494557 jgi|Araly1|494557|fgenesh2_kg.8__373__AT1G50010.1 640 0.0 Ahg948572 jgi|Araly1|948572|scaffold_800459.1 302 7e-81 Ahg356572 jgi|Araly1|356572|fgenesh1_pg.C_scaffold_8000359 185 7e-46 > Ahg475472 jgi|Araly1|475472|fgenesh2_kg.2__602__AT1G64740.1 Length=1637 Score = 2610 bits (1413), Expect = 0.0 Identities = 1568/1643 (95%), Gaps = 9/1643 (1%) Strand=Plus/Plus Query 1 TTGTCCTTTCACATCTAAAAGCGGGAGAGCCAACAAAACAACCTTCTTCCTCGCGAAAAC 60 |||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||| Sbjct 1 TTGTCCTTTCACATCTAAAAGCGGGAGACCCAAC--AACAACCATCTTCCTCGTGAAAAC 58 Query 61 agagagaaagaggaagaagaagaagaagTCTCTGAGAAATTTTCGAACATGAGGGAGATC 120 ||||||||||||||||||||| || ||| ||||||||| ||||||||||||||||||| Sbjct 59 AGAGAGAAAGAGGAAGAAGAA-CAG--GTCCCTGAGAAATATTCGAACATGAGGGAGATC 115 Query 121 ATTAGCATTCATATCGGACAAGCTGGTATTCAGGTCGGAAATTCTTGTTGGGAGCTTTAT 180 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 116 ATTAGCATTCATATCGGACAAGCTGGTATTCAGGTTGGAAATTCTTGTTGGGAGCTTTAT 175 Query 181 TGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGATAGTACTGTTGGTGCA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 176 TGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGATAGTACTGTGGGTGTA 235 Query 241 TGTCATGATGCATTCAACACATTCTTTAGCGAGACAAGCTCAGGCCAACATGTGCCTCGA 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 236 TGTCATGATGCATTCAACACATTCTTTAGCGAGACAAGCTCAGGCCAACATGTTCCTCGG 295 Query 301 GCTGTGTTTCTTGATCTCGAACCAACCGTCATTGACGAAGTAAGAACCGGCACTTACAGA 360 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 296 GCTGTGTTTCTTGATCTCGAACCAACCGTCATTGATGAAGTAAGAACCGGCACTTACAGA 355 Query 361 CAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAGATGCAGCCAATAACTTTGCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 CAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAGATGCAGCCAATAACTTTGCT 415 Query 421 AGAGGCCATTACACTGTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 AGAGGCCATTACACTGTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAA 475 Query 481 TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGGTATTCAATGCTGTTGGGGGTGGA 540 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 476 TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGGTGTTTAATGCTGTTGGGGGTGGA 535 Query 541 ACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGaaaaaaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 536 ACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGAAAGAAA 595 Query 601 TCAAAACTCGGTTTCACCATCTACCCTTCTCCTCAGGTTTCTACAGCAGTTGTGGAGCCG 660 || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 596 TCTAAACTCGGTTTCACCATATACCCTTCTCCTCAGGTTTCTACAGCAGTTGTAGAGCCA 655 Query 661 TATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAACACACAGATGTTGTTGTTCTTTTG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 TATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAACACACAGATGTTGTTGTTCTTTTG 715 Query 721 GACAATGAAGCCATATACGATATCTGCAGGAGATCTTTAGACATTGAGAGGCCTACATAC 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 716 GACAATGAAGCCATATACGATATCTGCAGGAGATCTTTAGACATTGAGAGGCCTACGTAC 775 Query 781 TCCAATTTGAACCGCTTGATCTCCCAAACCATCTCTTCGCTTACAACTTCTCTAAGATTT 840 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 776 ACCAATCTGAACCGCTTGATCTCCCAAACCATCTCTTCGCTTACAACTTCTCTGAGATTT 835 Query 841 GACGGTGCCATCAATGTGGACATCACCGAGTTCCAGACCAACCTTGTACCTTACCCTCGG 900 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 836 GACGGTGCCATCAACGTGGACATCACGGAGTTCCAGACCAACCTTGTACCTTACCCTCGG 895 Query 901 ATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAAGGCCTACCATGAG 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 ATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAAGGCCTACCATGAG 955 Query 961 CAGTTTTCGGTCCCTGAGATCACGACTTCCGTCTTTGAACCCTCCAATATGATGGCTAAA 1020 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 956 CAGTTCTCAGTCCCTGAGATCACGACTTCTGTCTTTGAACCCTCCAATATGATGGCCAAA 1015 Query 1021 TGTGACCCTAGGCATGGCAAGTACATGGCTTGCTGTTTGATGTATCGTGGTGACGTTGTG 1080 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1016 TGTGACCCAAGGCATGGGAAGTACATGGCTTGCTGTTTGATGTATCGTGGTGATGTTGTG 1075 Query 1081 CCCAAGGATGTCAATACAGCCGTTGCTGCCATCAAAGCCAAACGAACAATTCAGTTTGTT 1140 || ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 1076 CCTAAGGATGTCAATACAGCCGTTGCTGCCATCAAAACCAAGCGAACAATTCAGTTTGTT 1135 Query 1141 GACTGGTGCCCAACTGGATTCAAGTGCGGGATAAACTACCAGCCGCCTTCCGTTGTTCCA 1200 ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 1136 GACTGGTGCCCAACTGGATTCAAATGCGGAATAAACTACCAGCCGCCTTCAGTTGTTCCA 1195 Query 1201 GGTGGTGACCTGGCTAAGGTTCAACGAGCGGTTTGCATGATCAGCAATAATACTGCAGTT 1260 |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1196 GGTGGTGACCTGGCGAAGGTTCAACGAGCAGTTTGCATGATCAGCAACAATACTGCAGTG 1255 Query 1261 GCTGAAGTGTTCTCACGTATAGACCATAAGTTTGATCTCATGTACTCCAAAAGAGCCTTT 1320 || ||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1256 GCGGAAGTGTTCTCTCGCATAGACCACAAGTTTGATCTCATGTACTCCAAAAGAGCATTT 1315 Query 1321 GTCCATTGGTATGTAGGAGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGAT 1380 ||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||| Sbjct 1316 GTCCATTGGTATGTAGGTGAAGGCATGGAAGAAGGAGAGTTCTCTGAGGCCCGTGAGGAT 1375 Query 1381 CTTGCTGCCCTCGAGAAAGATTATGAGGAAGTTGGTGGAGAAGGAGCGGAGGACGACGAC 1440 |||||||| || ||||||||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 1376 CTTGCTGCTCTTGAGAAAGATTATGAGGAAGTTGGTGCAGAAGGAGCAGAGGATGACGAC 1435 Query 1441 GAAGAAGGCGATGAGTATTAGAAAGACACAAGAGTGTGTGTTCCCTTGTTTCTTTCTTGT 1500 |||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| Sbjct 1436 GAAGAAGGCGATGAGTATTAGAAAGACACAAGAGTG-GTTTTCCATTGTTTCTTTCTTGT 1494 Query 1501 GA-AGTACAGTAATTATGTCTTTGTGAATGTGATCTCTACAGTTATTTTGTGATGTTT-A 1558 || | ||||| || ||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1495 GACA-TACAGCAACTATGTCTATGTGAATGTGATCTCTACAGTTATTTTGTGATGTTTTA 1553 Query 1559 CGGGTCTCTCCCCTTTTATTTCTCATTTGTGTTTACTAAAGGATTGCATTTCTAGTGCAT 1618 |||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||| Sbjct 1554 CGGGTCTCTCCCCTTTTATTTCTCATGTGTGTTTGCTAATGGATTGCATTTATAGTGCAT 1613 Query 1619 CTCAATACATAGTTTGAAGGATT 1641 ||||||||| ||||||||||||| Sbjct 1614 CTCAATACAAAGTTTGAAGGATT 1636 > Ahg488873 jgi|Araly1|488873|fgenesh2_kg.6__2007__AT5G19780.1 Length=1667 Score = 1013 bits (548), Expect = 0.0 Identities = 1104/1373 (80%), Gaps = 36/1373 (3%) Strand=Plus/Plus Query 105 GAACATGAGGGAGATCATTAGCATTCATATCGGACAAGCTGGTATTCAGGTCGGAAATTC 164 ||| ||| | || ||||| ||||||||||||||||||||||| || |||||||| ||||| Sbjct 58 GAAGATGCGAGAAATCATAAGCATTCATATCGGACAAGCTGGGATCCAGGTCGGGAATTC 117 Query 165 TTGTTGGGAGCTTTATTGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGA 224 || ||||||||||| |||||||||||||| ||||| ||||| || | ||||| ||||| Sbjct 118 GTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGTGA 177 Query 225 TAGTACTGTTGGTGCATG-TCATGATGCATTCAACACATTCTTTAGCGAGACAAGCT-CA 282 || ||| ||||||| || || ||||| |||||||| |||||||||||||| | | | Sbjct 178 TACTACAGTTGGTG-TTGCGCACGATGCGTTCAACACCTTCTTTAGCGAGAC-TGGTGCT 235 Query 283 GGCCAA-CATGTGCCTCGAGCTGTGTTTC-TTGATCTCGAACCAACCGTCATTGACGAAG 340 || || ||||| ||| | ||||| ||| ||||||| || || || || || ||||||| Sbjct 236 GG-GAAGCATGTCCCTAGGGCTGT-CTTCGTTGATCTTGAGCCTACTGTTATCGACGAAG 293 Query 341 TAAGAACCGGCACTTACAGACAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAG 400 | | || || |||||| | |||||||||||||| ||||| || || || || ||||||| Sbjct 294 TTCGTACTGGTACTTACCGTCAGCTTTTCCATCCTGAGCAGCTCATTTCCGGGAAAGAAG 353 Query 401 ATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGTTGGAAGGGAAATTGTTGACAC-C 459 |||| || || ||||| |||||||| |||||||||||||||| ||||||||| || | Sbjct 354 ATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGAAAGGAAATTGTGGA-TCTA 412 Query 460 TGCCTTGAAAG-GCTGAGGAAA-TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGG 517 |||||||| | | |||||||| || || ||||| || || || |||||||| ||||||| Sbjct 413 TGCCTTGACCGTG-TGAGGAAACTT-GCCGACAACTGTACTGGCTTACAAGGGTTTTTGG 470 Query 518 TATTCAATGCTGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCT 577 | |||||||||||||| |||||||| |||||||| ||||||||| | |||| || || | Sbjct 471 TGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGTTAGAACGTT 530 Query 578 TGTCCGTAGATTTTGGaaaaaaaTCAAAACTCGGTTTCACCATCTACCCTTCTCCTCAGG 637 |||| ||||||| ||||| || || || || ||||||||||| |||||||||||||||| Sbjct 531 TGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTCACCATTTACCCTTCTCCTCAGG 590 Query 638 TTTCTACAGCAGTTGTGGAGCCGTATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAAC 697 ||||||| || ||||| ||||| || |||||||||||||| || ||||| ||||| |||| Sbjct 591 TTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTCTCAACGCATTCCCTTCTTGAAC 650 Query 698 ACACAGATGTTGTTGTTCTTTTGGACAATGAAGCCATATACGATATCTGCAGGAGATCTT 757 |||| ||||| | ||| || ||||| || |||||||| || || || ||| | ||||| Sbjct 651 ACACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATCCC 710 Query 758 TAGACATTGAGAGGCCTACATACTCCAATTTGAACCGCTTGATCTCCCAAACCATCTCTT 817 |||| || |||||||| || ||| | || |||||| | ||||| || || | ||| || | Sbjct 711 TAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGATCATTTCAT 770 Query 818 CGCTT-ACAACTTC-TCTAAGATTTGACGGTGCCATCAATGTGGACATCACCGAGTTCCA 875 | ||| ||||| || | | || ||||| || |||||||||||||| ||||| |||||||| Sbjct 771 C-CTTGACAACATCGT-TGAGGTTTGATGGAGCCATCAATGTGGATATCACTGAGTTCCA 828 Query 876 GACCAACCTTGTACCTTA-CCCTCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTGA 934 |||||| ||||| || || ||| || ||||| ||||||||||| ||||||||||| || | Sbjct 829 GACCAATCTTGTCCCATATCCC-CGTATCCATTTCATGCTCTCATCTTATGCACCAGTCA 887 Query 935 TTTCATCTGCAAAGGCCTACCATGAGCAGTTTTCGGTCCCTGAGATCACGACTTCCGTCT 994 | ||| | || ||||| |||||||| ||||| || |||||||||||||| | | |||| | Sbjct 888 TCTCAGCCGCCAAGGCTTACCATGAACAGTTATCAGTCCCTGAGATCACCAATGCCGTGT 947 Query 995 TTGAACCCTCCAATATGATGGCTAAA-TGTGACCCTAGGCATGGCAAGTACATGGCTTGC 1053 |||| || | | |||||||| ||| |||||||| ||||| || ||||||||||| || Sbjct 948 TTGAGCCAGCTAGCATGATGGC-AAAGTGTGACCCGAGGCACGGAAAGTACATGGCATGT 1006 Query 1054 TGTTTGATGTATCGTGGTGACGTTGTGCCCAAGGATGTCAATACAGCCGTT-GCTGCCAT 1112 ||||||||||| ||||| || || || ||||| ||||| ||| | || ||| || |||| Sbjct 1007 TGTTTGATGTACCGTGGAGATGTCGTTCCCAAAGATGTTAATGCTGCTGTTGGC-ACCAT 1065 Query 1113 CAAAGCCAAACGA--ACAATTCAGTTTGTTGACTGGTGCCCAACTGGATTCAAGTGCGGG 1170 | ||| |||| || || |||||||||||||||||||||||||||| ||||| || || Sbjct 1066 C-AAGACAAA-GAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGGA 1123 Query 1171 ATAAACTACCAGCCGCCTTCCGTTGTTCCAGGTGGTGACCTGGCTAAGGTTCA-ACGAGC 1229 || |||||||| || || | |||||||||||||||||||| ||||||||||| | |||| Sbjct 1124 ATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGA-GAGC 1182 Query 1230 GGTTTGCATGATCAGCAATAATACTGCAGTTGCTGAAGTGTTCTCACGTATAGACCATAA 1289 || ||||||||||| || || || |||||||| || ||||||||||| || ||||| || Sbjct 1183 TGTGTGCATGATCAGTAACAACACAGCAGTTGCGGAGGTGTTCTCACGGATCGACCACAA 1242 Query 1290 GTTTGATCTCATGTACTCCAAA-AGAGCCTTTGTCCATTGGTATGTAGGAGAGGGTATGG 1348 ||||||||| ||||| | |||| || || ||||| || ||||| || || ||||| |||| Sbjct 1243 GTTTGATCTTATGTA-TGCAAAGAGGGCATTTGTGCACTGGTACGTTGGTGAGGGAATGG 1301 Query 1349 AAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTG-CTGCCCTCGAGAAAGATTATGAG 1407 | ||||| || ||||||||||| ||||| || |||| | || || ||||||||||| || Sbjct 1302 AGGAAGGTGAATTCTCTGAGGCACGTGAAGA-CTTGGCCGCACTGGAGAAAGATTACGAA 1360 Query 1408 GAAGTTGGTGGAGAAGGAGCG-GAGGACGACGACGAAGAAGGCGATGAGTATT 1459 ||||| |||| ||||| | | || || || || || ||||| || || |||| Sbjct 1361 GAAGTGGGTGCTGAAGGTG-GTGACGATGAAGAAGATGAAGGTGAAGACTATT 1412 > Ahg494557 jgi|Araly1|494557|fgenesh2_kg.8__373__AT1G50010.1 Length=1707 Score = 640 bits (346), Expect = 0.0 Identities = 1065/1403 (76%), Gaps = 85/1403 (6%) Strand=Plus/Plus Query 104 CGAACATGAGGGAGAT-CA-TTAGCATTCATATCGGACAAGCTGGTATTCAGGTCGGAAA 161 |||| ||||| ||| | || || | || || || || || || ||||| ||||||||||| Sbjct 99 CGAAAATGAGAGAG-TGCATTTCG-ATCCACATTGGTCAGGCCGGTATCCAGGTCGGAAA 156 Query 162 TTCTTGTTGGGAGCTTTATTGTCTCGAACATGGTATCCAACCCGATGG-CACCATGCCCA 220 |||| ||||||||||| ||||| |||||||| || || || ||||| || ||||||| Sbjct 157 CGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTCAGCCTGATGGTCA-GATGCCCA 215 Query 221 GTGA-TAGTACTGTTGGTGCATGTCATGATGCATTCAACACATTCTTTAGCGAGACAAGC 279 |||| || |||||||| | | || | ||||| |||||||| ||||| || || || | Sbjct 216 GTGACAAG-ACTGTTGGCGGAGGTGACGATGCTTTCAACACCTTCTTCAGTGAAAC-CGG 273 Query 280 T-CAGGCCAA-CATGTGCCTCGAGCTGTGTTTCTTGATCTCGAACCAACCGTCATTGACG 337 | |||| || || || || || ||||| ||| ||||||| || ||||| || || || | Sbjct 274 TGCAGG-GAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGTGATCGATG 332 Query 338 AAGTAAGAACCGGCACTTACAGACAGCTTTTCCATCCC-GAGCAACTTATC-TCTGGCAA 395 | || || || || || ||| | ||||||||||| ||| |||||||| ||| | || || Sbjct 333 AGGTTAGGACTGGTACATACCGTCAGCTTTTCCA-CCCTGAGCAACTCATCAGC-GGTAA 390 Query 396 AGAAGATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGTT-GGAAGGGAAATTGTTG 454 |||||||||||| || ||||| || | || |||||||| || |||| || ||||||| Sbjct 391 AGAAGATGCAGCTAACAACTTCGCCCGTGGACATTACACCATTGGGAA-AGAGATTGTTG 449 Query 455 ACACCTG-CCTT-GAAAGGCTGAGGAAA-TTGGCAGACAATTGCACAGGGT-TACAAGGA 510 | ||| ||| || | | | |||| | || || || || || ||| | |||||| Sbjct 450 --ATCTGTGCTTGGACCGTATCA-GAAAGCTCGCTGATAACTGTAC-TGGTCTCCAAGGA 505 Query 511 TT-TTTGGTATTCAATGCTGTTGGGGGTGGAACAGGTTCTGGT-TTGGGTTCTTTACT-G 567 || || || ||||| |||||||| || || || || |||||| || || ||| | || Sbjct 506 TTCCTT-GTCTTCAACGCTGTTGGTGGAGGCACTGGATCTGGTCTT-GGATCTCTCCTCC 563 Query 568 TTGGAGCG-CTTGTCCGTAGATTTTGGaaaaaaaTCAAAACTCGGTTTCACCATCTACCC 626 || ||| | ||| || || || | ||| ||||| || || | |||||||| | ||||| Sbjct 564 TT-GAGAGACTT-TCTGTTGACTATGGCAAAAAGTCCAAGTTGGGTTTCACTGTTTACCC 621 Query 627 TTCTCCTCAGGTTTCTACAGCAGTTGTGGAGCCGTATAACAGTGTTCTCTCGACTCATTC 686 ||||| ||||| ||||| | ||||| ||||| || |||||||| ||||| ||||| || Sbjct 622 ATCTCCACAGGTCTCTACCTCCGTTGTTGAGCCATACAACAGTGTCCTCTCCACTCACTC 681 Query 687 TCTTC-TCGAACACACAGATGTTGT-TGTTCTTTTGGACAATGAAGCCATATACGATATC 744 || || | |||||||| |||| | | | || | || || ||||| || || || ||| Sbjct 682 TC-TCTTGGAACACACTGATG-TCTCCATCCTCCTCGATAACGAAGCTATCTATGACATC 739 Query 745 TGCAGGA-GAT-CTTTAGACATTGAGAGGCCTACATACTCCAATTTGAACCG-CTTGATC 801 |||| || | | | | || ||||||| | || || ||| |||| | ||||| |||| || Sbjct 740 TGCA-GACGCTCCCTAAG-CATTGAGCGACCAACCTACACCAACCTCAACCGTCTTG-TC 796 Query 802 TCCCAAACCATCTCTTCGCTT-ACAACTTCTCTAAGATTTGACGGTGCCATCAATGTGGA 860 || || ||||| || ||| || ||||||| || ||||| |||||| | || ||||| Sbjct 797 TCTCAGGTGATCTCATC-CTTGACTGCTTCTCTTAGGTTTGATGGTGCCTTGAACGTGGA 855 Query 861 CATCACCGAGTTCCAGACCAACCTT-GTACCTTACCCTCGGATCCACTTCATGCTCTCCT 919 |||| |||||||| ||||| ||| || || ||||| | |||||||||||||| || | Sbjct 856 TGTCACTGAGTTCCAAACCAA-CTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCGT 914 Query 920 CTTATGCACCTGTGATTTCATCTGC--A-AAGGCCTACCATGAGCAGTTTTCGGTCCCTG 976 | || ||||| || | || ||||| | ||||||| ||||||||| | || || ||| Sbjct 915 CCTACGCACCAGTCA--TC-TCTGCAGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTG 971 Query 977 AGATCACGACTTCCGT-C-TTTGAACC--C-TCCAATATGATGGCTAAATGTGACCCTA- 1030 ||||||| | | || | ||||| || | ||| ||||||||||| |||||||| | Sbjct 972 AGATCAC-A-AACAGTGCTTTTGAGCCAGCTTCC---ATGATGGCTAAGTGTGACCC-AC 1025 Query 1031 GGCATGGCAAGTACATGGCTTGCTGTTTGATGTATCGTGGTGACGTTGTGCCCAAGGATG 1090 | |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 1026 GTCATGGCAAGTACATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTCCCCAAGGATG 1085 Query 1091 TCAATACAGCCGTTGCTGC-CA-TCAA-AGCCAAACGAACAATTCAGTTTGTTGACTGGT 1147 | || |||| |||| || || |||| | |||| || || ||||||||||||||||||| Sbjct 1086 TGAACGCAGCTGTTG--GCACAATCAAGA-CCAAGCGCACTATTCAGTTTGTTGACTGGT 1142 Query 1148 G-CCCAACTGGATTCAAGTGCGGGATAAACTACCAGCCGCCTTCCGTTGTTCCAGGTGGT 1206 | |||| |||| |||||||| || || ||||| ||||| || | ||||||||||| ||| Sbjct 1143 GTCCCA-CTGGGTTCAAGTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCAGGAGGT 1201 Query 1207 GACCTGGCTAAGGTTCA-ACGAGCGGTTTGCATGATCAGCAATAATACTGCAGT-T-GCT 1263 || || ||||| || || | |||| ||||| |||||| ||| | | | |||| | ||| Sbjct 1202 GATCTTGCTAAAGTCCAGA-GAGCTGTTTGTATGATCT-CAA-ATTCCACCAGTGTTGCT 1258 Query 1264 GAAGTGTTCTCACGTATAGACCATAAGTTTGATCTCATGTACTCCAAAAGAGCCTTT-GT 1322 || |||||||| ||||| || || ||||||||||| |||||| ||||| | || ||| || Sbjct 1259 GAGGTGTTCTCCCGTATTGATCACAAGTTTGATCTTATGTACGCCAAACGTGC-TTTCGT 1317 Query 1323 CCATTGGTATGTAGGAGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCT 1382 || |||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1318 TCACTGGTATGTGGGTGAGGGTATGGAAGAAGGAGAATTCTCAGAGGCTCGTGAGGATCT 1377 Query 1383 TGCTGCCCTCGAGAAAGATTATGAGGAAGTTGGTGGAGAAGGAGCG-GAGGACGACGACG 1441 ||| || | ||||| |||||||| || ||||||| ||||| | | || || || || | Sbjct 1378 TGCAGCATTGGAGAAGGATTATGAAGAGGTTGGTGCTGAAGGTG-GTGACGATGAGGATG 1436 Query 1442 AAGAAGGCGATGAGTATTA-GAA 1463 | ||||| || ||||| || ||| Sbjct 1437 ATGAAGGAGAGGAGTACTAAGAA 1459 > Ahg948572 jgi|Araly1|948572|scaffold_800459.1 Length=348 Score = 302 bits (163), Expect = 7e-81 Identities = 235/266 (88%), Gaps = 19/266 (7%) Strand=Plus/Plus Query 1204 GGTGACCTGGCTAAGGTTCAACGAGCGGTTTGCATGATCAGCAATAATACTGCAGTTGCT 1263 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 95 GGTGACCTGGCAAAGGTTCAACGAGCGGTTTGCATGATCAGCAACAATACTGCAGTGGCT 154 Query 1264 GAAGTGTTCTCACGTATAGACCATAAGTTTGATCTCATGTACTCCAAAAGAGCCTTTGTC 1323 |||||||||| |||||||||||||||||||||| | |||||||||| ||||||||||||| Sbjct 155 GAAGTGTTCTTACGTATAGACCATAAGTTTGATTTGATGTACTCCACAAGAGCCTTTGTC 214 Query 1324 CATTGGTATGTAGGAGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGC-TCGTGAGGATCT 1382 |||||||||||||||||||| |||||||||||||||||||||| | | | |||||||| | Sbjct 215 CATTGGTATGTAGGAGAGGGCATGGAAGAAGGAGAGTTCTCTG-GCCCT-GTGAGGAT-T 271 Query 1383 TGCTGCCCTCGAGAAAGATTATGAGGAAGTTGGTGGAGAAGGAGCGGAGGACGACGACGA 1442 |||||||| || || | | |||||| ||||||||| |||||||| ||||| Sbjct 272 --CTGCCCTC-AG---GA--A-G------TTGGTGCAGAAGGAGCAGAGGACGAAGACGA 316 Query 1443 AGAAGGCGATGAGTATTAGAAAGACA 1468 |||||||||||||||||||||||||| Sbjct 317 AGAAGGCGATGAGTATTAGAAAGACA 342 > Ahg356572 jgi|Araly1|356572|fgenesh1_pg.C_scaffold_8000359 Length=618 Score = 185 bits (100), Expect = 7e-46 Identities = 111/116 (96%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 897 TCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAAGGCCTACCA 956 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 504 TCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAGGGCCTACCA 563 Query 957 TGAGCAGTTTTCGGTCCCTGAGATCACGACTTCCGTCTTTGAACCCTCCAATATGA 1012 | ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 564 TAAGCAGTTCTCGGTTCCTGAGATCACGACTTCCGTCTTTGAACC-TCCAATATGA 618 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61934738370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5