BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64770.3 Length=1746 Score E Sequences producing significant alignments: (Bits) Value Ahg475479 jgi|Araly1|475479|fgenesh2_kg.2__609__AT1G64770.1 1454 0.0 > Ahg475479 jgi|Araly1|475479|fgenesh2_kg.2__609__AT1G64770.1 Length=1197 Score = 1454 bits (787), Expect = 0.0 Identities = 862/896 (96%), Gaps = 13/896 (1%) Strand=Plus/Plus Query 450 catttgtcttatc-ttttcctctccttactctccATCAATGGCTTCTCTTATCTCTTTTT 508 ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 39 CATTTGTCTTATCTTTTTCTTCTCCATACTCTCCATCAATGGCTTCTCTTATCTCTTTCT 98 Query 509 CTTTGCTCCCAAAACCAAAAGCCGTAAGAAGTTCAATTTCAGCTCCTCAGACACAGACAA 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 99 CTTTGCTCCCAAAACCAAAAGCCGTAAGAAGTTCAATTTCAGCTCCTCAGACACAGACAA 158 Query 569 TAAATACTGAAAAGCTTGAAGATAAATTCGGACGAAAAGGCATAAAATTCTCGGAATCAA 628 | ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 159 T-AAT--TGAGAGGCTTGAAGATAAATTCGGACGAAAAGGCATAAAATTCTCGGAATCAA 215 Query 629 ACAACATTCCTATGGTAGAGCTTAAGGTCAGAAATGGAAGTTCATTAAAACTGAGTCTAT 688 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 216 ACAACATTCCTATGGTAGAGCTTAAGGTGAGAAATGGAAGTTCATTAAAACTGAGTCTAT 275 Query 689 CAGATGCTCATGTACTTTCATATAAGCCAAAGGTATACTGGAAAGACGAGGGATTCGAGG 748 ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 276 CAGATGCTCATGTGGTTTCATATAAGCCAAAGGTATATTGGAAAGACGAGGGATTCGAGG 335 Query 749 AAGTCCTTTACACAGTTGATGGTGATGAGAGCAGAGGTGGGGTTGGTGTTGTTATCGTAA 808 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 336 AAGTCCTTTACACAGTTGATGGTGATGAGAGCAGAGGTGGGGTTGGTGTTGTTATCGTAA 395 Query 809 ACGGGGAAGAACC---T------AAAGGAGGGTCTTCAGTAATCTCAGGATGTGATTGGA 859 ||||||||||||| | ||||||| |||||||||||||||||||| |||||||| Sbjct 396 ACGGGGAAGAACCTAATGGACCAAAAGGAGTGTCTTCAGTAATCTCAGGATATGATTGGA 455 Query 860 GTGTCAAGGATACTGATTCAGACGCCATTGATGCTCTTCAGATCGAACTTAGCTGTACGG 919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 456 GTGTCAAGGATACTGATTCAGACGCCATTGATGCTCTTCAGATCGAACTTAGCTGTACGG 515 Query 920 CCGGGGTTCTCGACATAACGTATATCGTCTCTCTCTACCCAGTAAGCATGGCTACAGCTC 979 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 516 CCGGGGTTCTCGACATAACGTATATCGTCTCTCTCTATCCAGTAAGCATGGCTACAGCTC 575 Query 980 TGGTGGTGAAGAACAATGGTCGCAAACCAGTTACCCTTAAACCGGGGATTATGAGTTACT 1039 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 TGGTGGTTAAGAACAATGGTCGCAAACCAGTTACCCTTAAACCGGGGATTATGAGTTACT 635 Query 1040 TGAGGTTCAAGAAACGGAGTGGGGCAGGAATTCAAGGACTAAAGGGATGCTCTTATTGTC 1099 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 636 TGAGGTTCAAGAAACGGAGTGGGGCAGGAATTCAAGGACTAAAGGGATGCTCTTATTGCC 695 Query 1100 CCAACCCGCCTTTGTCATCGCCTTTTGAGCTCTTGTCTCCTTCTGAGGCAATGAAGGCGG 1159 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 696 CCAACCCGCCTTTGTCATCGCCTTTTGAGCTCTTGTCTCCTTCCGAGGCAATGAAGGCGG 755 Query 1160 AATCTTCGGGGTGGTTCGGGTCGGAAGAAGGGGAAAAGCCGGGGATTTGGGCAGTAGAAG 1219 | ||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct 756 ACTCTTCCGGGTGGTTTGGGTCGGACGAAGGGGAAAAGCCGGGGATTTGGGCGGTAGAAG 815 Query 1220 ATTCTGTTATTACACTTCTTGAGAAAAAGATGAGTAGAATATATGGTGCTCCTCCGGCTG 1279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 816 ATTCTGTTATTACACTTCTTGAGAAAAAGATGAGTAGAATATATGGTGCTCCTCCGGCTG 875 Query 1280 AGAGATTAAAGGCAGTCTATAACACTCCACCTTCCAAATTTGAAACTATAGATCAG 1335 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 876 AGAGATTAAAGGCAGTCTATAACACTCCACCTTCAAAATTTGAAACTATAGATCAG 931 Score = 453 bits (245), Expect = 2e-126 Identities = 263/271 (97%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 1402 AGGG-AGAGGATTGTTTTTCAGGATGATAAGGATTGGGTTCGAAGAGATGTATGTGGGAT 1460 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 930 AGGGAAGAGGATTGTTTTTCAGGATGATAAGGATAGGGTTCGAAGAGATGTATGTGGGAT 989 Query 1461 CCCCAGGATCGATGTGGGACAAGTATGGGAAGCAACATTACTTCGTGTGCACAGGTCCAA 1520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 990 CCCCAGGATCGATGTGGGACAAGTATGGGAAGCAACATTACTTCGTGTGCACAGGTCCAA 1049 Query 1521 CGTCAATGCTCGTTCCTGTCGATGTAGCCTCCGGAGAGACATGGAGAGGAGCAATGGTAA 1580 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1050 CGTCAATGCTCGTTCCTGTCGATGTGGCCTCCGGAGAGACATGGAGAGGAGCAATGGTAA 1109 Query 1581 TCGAGCATGATAATTTGTAAatttcatttactatagttctgtcttcttcattttttccct 1640 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | Sbjct 1110 TCGAGCATGATAATTTGTAAATTTCATTAACTATAGTTCTGTATTCTTCATTTTTT---T 1166 Query 1641 ctctatttttgttgccattttttcttctata 1671 ||||||||||||||||||||||||||||||| Sbjct 1167 CTCTATTTTTGTTGCCATTTTTTCTTCTATA 1197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65515221400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5