BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64810.2 Length=1716 Score E Sequences producing significant alignments: (Bits) Value Ahg475482 jgi|Araly1|475482|fgenesh2_kg.2__612__AT1G64810.1 2314 0.0 > Ahg475482 jgi|Araly1|475482|fgenesh2_kg.2__612__AT1G64810.1 Length=1616 Score = 2314 bits (1253), Expect = 0.0 Identities = 1497/1613 (93%), Gaps = 24/1613 (1%) Strand=Plus/Plus Query 48 TCAAATCCTCATC-TATTTTCTTAAATGTTGCAGGAATCTGGGAAAGTAATCGTTTTTGG 106 ||| ||||||| | | ||||||||||||||||||||||| |||||||||| | ||||||| Sbjct 16 TCATATCCTCA-CTTGTTTTCTTAAATGTTGCAGGAATCAGGGAAAGTAAGCATTTTTGG 74 Query 107 CTTAATTCTGATTTGGG---TTCTTACTTATATAGTCAACATGCTTCTGGTTTCTCCTGC 163 |||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 75 CTTACTTCTGATTTGGGTTCTTCTTACTTATATAGTCAACATGCTTCTGGTTTCGCCTGC 134 Query 164 TTGTAGAGGTGTTTATCTTCAGACCATAGATCCAAAGCCAATTGATTTCTCAGCTAGAGC 223 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 135 TTGTAGAGGTGTTTATCTTCAGACCATAGATCCAAATCCAATTGATTTTTCAGCCAGAGG 194 Query 224 CTCTTATGCACTTTGCTTTCAGATTCCTAC-TTCAATCCCTAAAAGAGAGTGTTTGATGA 282 |||||||||| |||||||||||||||| | ||||||||||||||| ||||| | ||||| Sbjct 195 CTCTTATGCAAGTTGCTTTCAGATTCCT-CGTTCAATCCCTAAAAGGGAGTGCTCGATGA 253 Query 283 GGTTAGGAACGGTCTTTTGTTTTAATCAGAAGCATAGAGAGCAGACAAGTTTTAAGAAAC 342 ||||| |||| | ||||||| |||||||| | || |||||| |||||||| ||||||| Sbjct 254 GGTTAAGAACCATAGTTTGTTTCAATCAGAATCTTACAGAGCACACAAGTTTCAAGAAAC 313 Query 343 GGTATGTATCTACGCAGAATGTGGATCTTCCTCCTATTTTACCAAAGAACAAGAAGAAAC 402 || ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 GGCATGTATCCACCCAGAATGTGGATCTTCCTCCTATTTTACCAAAGAACAAGAAGAAAC 373 Query 403 CTTATCCTATTCCTTTTAAGCAAATCCAAGAAGAGGCTAGGAAAGATAAGAAACTTGCTC 462 |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 374 CTTATCCTGTTCCTTTTAAGCAAATTCAAGAAGAGGCTAGGAAAGATAAGAAGCTTGCTC 433 Query 463 AGATGGGTATAGAGAAACAGTTGGATCCTCCTAAAAATGGATTGCTAGTTCCCAATCTTG 522 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 434 AGATGGGTATAGAGAAACAGTTGGAACCTCCTAAAAATGGATTGCTAGTTCCCAATCTTG 493 Query 523 TTCCTGTGGCTG-ATCAAGTGATAGATAACTGGAAGTTGTTGATCAAGGGTTTAGCACAG 581 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 494 TTCCTGTGGC-GTATCAAGTGATAGATAACTGGAAGTTGTTGATCAAGGGTTTAGCACAG 552 Query 582 CTTCTTCATGTTGTTCCCGTCTTTGCTTGTAGTGAATGTGGAGCGGTTCATGTGGCTAAT 641 |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 553 CTTCTTCATGTTGTTCCCGTGTTTGCTTGTAGTGAATGTGGAGCGGTTCATGTTGCCAAT 612 Query 642 GTTGGTCATAACATTAGGGATTGTAATGGTCCAACGAATTCACAGCGACGTGGTTCTCAT 701 | |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 613 GCTGGTCACAACATTAGGGATTGCAATGGTCCAACAAATTCACAGCGACGTGGTTCTCAT 672 Query 702 TCTTGGGTTAAGGGTACCATTAACGATGTTCTTATTCCTGTTGAGTCGTACCACATGTAT 761 || ||||||||||||||||| || |||||||| |||||||||||||||||||||||| || Sbjct 673 TCATGGGTTAAGGGTACCATCAATGATGTTCTCATTCCTGTTGAGTCGTACCACATGCAT 732 Query 762 GACCCTTTCGGGCGGCGGATTAAGCATGAAACACGGTTTGAGTATGAAAGAATCCCAGCA 821 |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 733 GACCCTTTTGGGCGGCGGATTAAGCACGAAACACGGTTTGACTATGAAAGAATCCCAGCA 792 Query 822 CTTGTTGAGCTATGTATTCAAGCTGGAGTTGAGATCCCTGAGTATCCTTGTCGCAGAAGG 881 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 793 CTTGTTGAGCTATGTATTCAGGCTGGAGTTGAGATCCCTGAGTATCCTTGTCGCAGAAGG 852 Query 882 ACACAGCCAATCAGAATGATGGGGAAGAGAGTGATCGATCGAGGTGGATATCATAAAGAG 941 |||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 853 ACACAGCCAATCCGAATGATGGGGAAGAGAGTGATCGATCGAGGTGGATATCTTAGAGAG 912 Query 942 CCTGAAAAGCCTCAGACATCATCATCATTATCATCTCCA-TTAGCCGAGCTTGATACTCT 1000 ||||| ||||||||| | |||||||||||||||||||| || ||||||||||| || || Sbjct 913 CCTGATAAGCCTCAG--A-CATCATCATTATCATCTCCACTT-GCCGAGCTTGACACGCT 968 Query 1001 TGGTGTTTTTGAAAGGTATCCACCTCCCACTCCAGAGGATATACCTAAGATAGCACAGGA 1060 ||| | || ||||||| |||| |||||||| |||||||| |||||||||||||||||||| Sbjct 969 TGGAGCTTGTGAAAGGCATCCGCCTCCCACACCAGAGGACATACCTAAGATAGCACAGGA 1028 Query 1061 AACAATGGATGCTTATGAGAAAGTGAGATTGGGGGTGACGAAATTAATGAGGAAATTCAC 1120 |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct 1029 AACAATGGATGCTTATGAAAAAGTGAGATTGGGGGTGACCAAATTGATGAGGAAATTCAC 1088 Query 1121 AGTGAAAGCATGCGGATATTGTTCTGAAGTGCATGTAGGACCATGGGGACATAGTGTAAA 1180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1089 GGTGAAAGCATGCGGATATTGTTCTGAAGTGCATGTAGGACCATGGGGACATAGTGTGAA 1148 Query 1181 GCTGTGCGGAGAGTTCAAGCACCAATGGAGAGATGGGAAGCACGGATGGCAAGATGCTCT 1240 ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1149 GCTGTGCGGGGAGTTCAAACACCAATGGAGAGACGGGAAGCACGGATGGCAAGATGCTCT 1208 Query 1241 TGTGGACGAAGTCTTTCCTCCAAACTATGTATGGCATGTGAGAGACCTTAAGGGAAATCC 1300 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1209 TGTGGACGAAGTCTTTCCTCCAAATTATGTATGGCATGTGAGAGACCTTAAGGGAAATCC 1268 Query 1301 GCTTACCGGAAACCTCAGAAGGTTTTATGGTAAAGCCCCTGCTTTGGTTGAGATTTGTAT 1360 |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1269 GCTTACCGGAAATCTGAGGAGGTTTTATGGTAAAGCCCCTGCTTTGGTTGAGATTTGTAT 1328 Query 1361 GCACAGTGGAGCTCGGGTTCCTCAACGCTATAAGGCCATGATGAGGCTTGACATCATTGT 1420 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1329 GCACAGTGAAGCTCGGGTTCCTCAACGCTACAAGGCCATGATGAGGCTTGACATCATTGT 1388 Query 1421 TCCTGATTCACAGGAAGCCGACATGGTCGCATAAGTCCTTGGAAATGTTCAAAGTAGAAC 1480 |||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||| Sbjct 1389 TCCTGATTCACAGGAAGCTGACATGGTCGCATAGGTCCTTGGACATGTTCATAGTAGAAA 1448 Query 1481 TCCTTTGTTAGGATAAAGAAGCTGAAAATAAAATGAGCTGGCTAGCTAGGATCTTTCCTC 1540 ||| ||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1449 TCCATTGGTAGGATAAAAAAGTTGATAATAAAATGAGCTGGCTAGCTAGGATCTTTCCTC 1508 Query 1541 GTAGGAGACATTAGAAATCTTGTCATATAGTGTATTTTGCAATTTGGGTGTAAAATATTT 1600 ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1509 ATAGGATACGTTAGAAATCTTGTCATATAGTGTATTTTACAATTTGGGTGTAAAATATTT 1568 Query 1601 TAGAAATC-T-TGTCATA--T-AGAAATATTTTAGATATTTGTTTGATTCTCT 1648 ||||| || | ||| ||| | |||| |||| | |||||||||||||||||| Sbjct 1569 TAGAA-TCCTGTGT-ATAAATTAGAA-TATTA-A-ATATTTGTTTGATTCTCT 1616 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64372514050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5