BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64860.1
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925322 jgi|Araly1|925322|scaffold_200883.1 2512 0.0
> Ahg925322 jgi|Araly1|925322|scaffold_200883.1
Length=1580
Score = 2512 bits (1360), Expect = 0.0
Identities = 1513/1586 (95%), Gaps = 13/1586 (1%)
Strand=Plus/Plus
Query 227 TTGAGTGCAAAAGAGTGTTATATAATGGCTACTGCAGCTGTTATAGGACTCAACACTGGC 286
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TTGAGTGC--AAGAGTGTTATATGATGGCTACTGCAGCTGTTATAGGACTCAACACTGGG 58
Query 287 AAAAGATTGTTGAGTTCATCGTTTTATCACTCAGATGTTACAGAGAAGTTTCTATCTGTA 346
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 59 AAAAGATTGTTGAGTTCATCGTTTTATCACTCAGATGTTACCGAGAAGTTTTTATCTGTA 118
Query 347 AATGATCATTGTTCATCACAGTATCATATTGCTTCAACGAAAAGCGGGATAACTGCGAAA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AATGATCATTGTTCATCACAGTATCATATTGCTTCAACGAAAAGCGGGATAACTGCGAAA 178
Query 407 AAGGCG------TCGAACTATAGTCCGAGTTTTCCTTCGTCGAATCGTCACACACAATCT 460
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 179 AAGGCGTCATCATCGAACTATAGTCCGAGTTTTCCTTCATCGAATCGTCACACACAATCT 238
Query 461 GCTAAAGCTTTGAAAGAGAGTGTAGATGTTGCTTCTACTGAGAAGCCATGGCTACCTAAT 520
|| || ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 239 GCCAAGGCTTTGAAAGAGAGTGTAGATGTTGCTTCTACTGAGAAGCCATGGATACATAAT 298
Query 521 GGAACTGATAAGGAATTGGAAGAAGAATGTTATGATGATGATGATCTAATTAGTCATTCT 580
|||| | |||||||||||||||| ||| | | | ||||||||||||||||| ||||||||
Sbjct 299 GGAAGTCATAAGGAATTGGAAGAGGAA-GGT-T-ATGATGATGATCTAATTGGTCATTCT 355
Query 581 GTTGAGGCAATTTTACTGTTACAGAAGTCTATGTTAGAGAAAAGTTGGAATCTTTCATTT 640
||||||||| |||||||| |||| ||||||||||| |||||||||||||||||||| |||
Sbjct 356 GTTGAGGCACTTTTACTGCTACAAAAGTCTATGTTGGAGAAAAGTTGGAATCTTTCGTTT 415
Query 641 GAAAAGGCGGTGTCGAGTGAGTATC-CGGGCAAGGGGACTATACGGAAGAAGAAGATTCC 699
|| ||||||| ||| ||||||| | || ||||| ||||||| |||||||||||||||||
Sbjct 416 GAGAAGGCGGCGTCAAGTGAGT-CCTCGAGCAAGAGGACTATCCGGAAGAAGAAGATTCC 474
Query 700 GGTTATCACCTGTTCAGGGATTTCAGCTCGTCAAAGAAGGATTGGTGCTAAGAAGAAAAC 759
||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 475 GGTCATCACCTGTTCAGGGATTTCAGCTAGGCAAAGGAGGATTGGTGCTAAGAAGAAAAC 534
Query 760 TAATATGACTCATGTTAAAGCAGTTTCTGATGTTTCTAGTGGAAAGCAAGTTAGAGGTTA 819
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 535 TAATATGACTCATGTTAAAGCAGTTTCAGATGTTTCTAGTGGAAAGCAAGTCAGAGGTTA 594
Query 820 TGTGAAAGGTGTAATAAGTGAAGATGTGCTTAGTCATGTGGAAGTTGTGCGCTTGTCTAA 879
|||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 595 TGTGAAGGGTGTAATAAGTGAAGATGTGCTTAGTCACGCGGAAGTTGTGCGCTTGTCCAA 654
Query 880 GAAAATCAAATCTGGTCTTCGTCTTGATGATCATAAGTCAAGATTGAAGGATAGATTAGG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAAAATCAAATCTGGTCTTCGTCTTGATGATCATAAGTCAAGATTGAAGGATAGATTAGG 714
Query 940 CTGTGAGCCTTCTGATGAACAGCTTGCAGTATCTTTGAAGATATCTCGGGCCGAGCTTCA 999
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 715 CTGTGAGCCTTCTGATGAACAGCTTGCAGTATCCTTGAAGATATCTCGGGCCGAGCTTCA 774
Query 1000 GGCGTGGTTGATGGAGTGTCATCTAGCTAGAGAGAAGTTGGCTATGAGTAATGTGCGTTT 1059
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 775 GGCGTGGTTGATGGAATGTCATCTAGCTAGAGAGAAGTTGGCTATGAGCAATGTGCGTTT 834
Query 1060 GGTTATGTCTATTGCTCAGCGTTATGATAATTTGGGAGCAGAAATGTCTGACCTTGTTCA 1119
||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 835 GGTTATGTCTATTGCTCAGCGATACGATAATTTGGGAGCAGAAATGTCTGATCTTGTTCA 894
Query 1120 GGGTGGTCTTATCGGACTTTTGCGGGGAATAGAGAAATTTGATTCTTCCAAAGGTTTCAG 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GGGTGGTCTTATCGGACTTTTGCGGGGAATAGAGAAATTTGATTCTTCCAAAGGTTTCAG 954
Query 1180 AATTTCAACTTATGTATATTGGTGGATTCGACAGGGTGTCTCAAGAGCACTAGTGGACAA 1239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 955 AATTTCAACTTATGTATATTGGTGGATTCGACAGGGTGTCTCAAGAGCATTAGTGGACAA 1014
Query 1240 CTCAAGAACCTTGAGGTTACCTACTCACCTACATGAAAGACTCGGTTTAATCCGAAATGC 1299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1015 CTCAAGAACCTTGAGGTTACCTACTCACCTACATGAAAGACTCGGTCTAATCCGAAATGC 1074
Query 1300 AAAGCTTAGACTTCAAGAGAAAGGAATCACACCCTCCATTGATAGGATTGCAGAGTCTCT 1359
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1075 AAAGCTTAGACTTCAGGAGAAAGGAATCACACCCTCTATTGATAGGATTGCAGAGTCTCT 1134
Query 1360 AAACATGTCGCAGAAGAAAGTTAGAAATGCAACAGAGGCTGTAAGCAAAGTATTTTCTCT 1419
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1135 AAACATGTCGCAGAAGAAAGTTAGAAATGCAACAGAGGCTGTTAGCAAAATATTTTCTCT 1194
Query 1420 AGACAGAGATGCATTTCCTTCTTTGAATGGTCTCCCTGGAGAAACTCATCACAGTTACAT 1479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1195 AGACAGAGATGCATTTCCTTCTTTGAACGGTCTCCCTGGAGAAACTCATCACAGTTACAT 1254
Query 1480 TGCGGATACTCGTTTGGAGAACAATCCGTGGCACGGGTATGATGATTTGGCACTCAAGGA 1539
|||||||| |||||||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 1255 TGCGGATAATCGTTTGGAGAACAATCCCTGGCACGGGTATGATGATCTGGCACTTAAGGA 1314
Query 1540 GGAAGTAAGCAAGCTTATAAGTGCAACACTCGGAGAACGGGAAAAAGAGATCATTCGATT 1599
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1315 GGAAGTAAGCAAGCTTATAAGTGCAACACTCGGAGAACGGGAAAGGGAGATCATACGATT 1374
Query 1600 ATACTATGGTCTAGACAAAGAATGTCTCACATGGGAAGACATTAGTAAACGGATAGGATT 1659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1375 ATACTATGGTCTAGACAAAGAATGTCTCACATGGGAAGACATTAGCAAACGGATAGGATT 1434
Query 1660 ATCGAGAGAGAGGGTGAGACAGGTAGGGCTTGTGGCACTGGAGAAACTAAAACACGCAGC 1719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 ATCGAGAGAGAGGGTAAGACAGGTAGGGCTTGTGGCACTGGAGAAACTAAAACACGCAGC 1494
Query 1720 GAGGAAGAGAAAAATGGAGGCAATGATCCTTAAGAATTGATTTTGTTTTTGTACATTTTG 1779
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1495 GAGGAAGAGAAAAATGGAAGCAATGATCCTCAAGAATTGATTTTGTTTTTGTACATTTTG 1554
Query 1780 ATTACATCAGAGCCATAGAGAGCGGT 1805
||||||||||||||||||||||||||
Sbjct 1555 ATTACATCAGAGCCATAGAGAGCGGT 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73856985055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5