BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64890.1 Length=1774 Score E Sequences producing significant alignments: (Bits) Value Ahg475488 jgi|Araly1|475488|fgenesh2_kg.2__618__AT1G64890.1 2126 0.0 > Ahg475488 jgi|Araly1|475488|fgenesh2_kg.2__618__AT1G64890.1 Length=1557 Score = 2126 bits (1151), Expect = 0.0 Identities = 1375/1482 (93%), Gaps = 19/1482 (1%) Strand=Plus/Plus Query 145 CCAAAATATCTTCCAGAAATTTTGAATTTAACTCCG-ACGA-CC-AAAAGAAGGAAACTG 201 |||||||||||||||||||||| |||||||||||| |||| || |||| |||||||||| Sbjct 3 CCAAAATATCTTCCAGAAATTTCCAATTTAACTCCGTACGACCCAAAAAAAAGGAAACTG 62 Query 202 AA-AAAGACAATGAGCAGCAGCAGCGAT-ACTCATGCCGGAGAATCTCGTCATCGCCGTA 259 || ||||||||| | |||||||||||| | ||||||||||||||||||||||||||||| Sbjct 63 AACAAAGACAAT--G-AGCAGCAGCGATGA-TCATGCCGGAGAATCTCGTCATCGCCGTA 118 Query 260 ACCCGATCCGGTGGCTACTCGG-TTTCGGTTTCTTCGTACAAGGATTCAGAGGATTCCCA 318 |||||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||| Sbjct 119 ACCCGATCCGGTGGCTACTCGGCTTT-GGTTTCTTCGTACAAGGATTTAGAGGTTTCCCA 177 Query 319 TGGCTTGGAGCCAATTTCTTCCTCACAGAACAGCTCCGTGTTAATCCTTCAGTGCTTCAG 378 ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 178 TGGCTTGGAGCCAATTTCTTCCTCACAGATGAGCTCCGTGTAAATCCTTCAGTGCTTCAG 237 Query 379 CTTCTTCAAAACTCAGCCAATCTTCCAATGGTCGCTAAACCCATCTACGGCGTCGTTTCA 438 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 238 CTTCTTCAAAACTCAGCCAATCTTCCAATGGTCGCTAAACCAATCTACGGCGTCGTTTCA 297 Query 439 GACTCTGTCTACTTCTTTGGCCAACATCGAATCCCATACATCGCCGTTGGAGCTTTGTTA 498 ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| Sbjct 298 GACTCTGTCTACTTCTTTGGCCAACATCGAATCCCTTACATCGCTATTGGAGCCTTGTTA 357 Query 499 CAAGCAATCTCATGGCTAGCTATAGCATTCTTGTCAAGATCCAATGTATCAATCTTAGCT 558 |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||| Sbjct 358 CAAGCAATCTCATGGCTAGCAATAGCTTTCTTGTCAAGATCCAATGTGTCAATTTTAGCT 417 Query 559 TTATCGATATATCTTCTCCTTAGTAATCTCGGTGCTTCCTTAGTAGAAGTAGCGAATGAT 618 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 418 TTATCAATATATCTTCTTCTTAGTAATCTCGGTGCTTCCTTAGTGGAAGTAGCGAATGAT 477 Query 619 GCTATTGTTGCTGAATCCGGAAAGCAAAAAACCTCAGAGACGCAATCCGGTGAGCTACCG 678 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 478 GCTATTGTTGCTGAGGCCGGAAAGCAAAAAATCTCAGAGACGCAATCCGGTGAGCTACCT 537 Query 679 TCATTTGTTTGGATGGTTTCTTCTCTTGGTGGAATCTTAGGTAACCTTTTAGGTGGTATT 738 || ||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| Sbjct 538 TCGTTTGTTTGGATGGCTTCTTCTCTTGGTGGAATCTTGGGAAACCTTTTAGGTGGTATT 597 Query 739 GCTATCAAAACGTTTTCAGCTCAGTCAACGTTTCTTGTGTTTGGGATCTTGGCTCTTCTT 798 ||||| |||||| |||| |||| ||||||||| || ||||||||||| |||||||||||| Sbjct 598 GCTATTAAAACGATTTCTGCTCGGTCAACGTTCCTCGTGTTTGGGATTTTGGCTCTTCTT 657 Query 799 CAGTTCTTGGTAACTATAAACATCAGAGAAAAGTCTCTTAATCTTCCGGAAAATCCATCA 858 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 658 CAGTTCTTGGTAACTATAAACATCCGAGAAAAGTCTCTTAATCTTCCGGAAAATCCATCA 717 Query 859 CCAGCTGGTGGTATTAGGAAACATCTCTCTGATCTTTCGCATGTGTTGAGGAAGCCCGAG 918 ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 718 CCAGCTGGT---ATTAGAAAACATCTCTCTGACCTTTCGCATGTGTTGAGGAAGCCCGAG 774 Query 919 ATTTCTTATTCGATAGCTTGGATCGCGGTATCAACCGCTGTGGTTCCGGTTTTGACAGGG 978 ||||||| ||| ||||| ||||||||| ||||||||||||| ||||| ||| |||| ||| Sbjct 775 ATTTCTTTTTCCATAGCCTGGATCGCGTTATCAACCGCTGTAGTTCCTGTTCTGACTGGG 834 Query 979 ACTATGtttttttACCAAACAAAGTTTCTGAAGATTGATGCATCACTTTTAGGGATCTCC 1038 || ||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||| Sbjct 835 ACAATGTTCTTTTACCAAACAAAGTTTCTGAAAATCGATGCATCACTTCTAGGGATCTCC 894 Query 1039 AAGGTGTTTGGTCAAATTGCAATGCTTCTT-TGGGGTTTTGCATATAATCGTTGGCTAAA 1097 ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct 895 AAGGTGTTTGGTCAAATTGCAATGCTT-TTATGGGGTTTTGCATACAATCGTTGGCTCAA 953 Query 1098 AGCTATGCGGCCGAGGAAACTGCTGACAGCCATTCAGGTGACGATAGCTTTCTTTGTGAT 1157 | || | | |||||||||| || ||||||| |||||||| || ||||||||||||||||| Sbjct 954 ATCTGTACAGCCGAGGAAATTGATGACAGCTATTCAGGTAACAATAGCTTTCTTTGTGAT 1013 Query 1158 ATCCGATCTCTTGTTTGTGAAAGGCGTGTACCGGGATTTGGGAGTGTCGGACTCTGTATA 1217 |||||||||||| ||||||| |||||| |||||||||||||||||||| ||||||||||| Sbjct 1014 ATCCGATCTCTTATTTGTGAGAGGCGTTTACCGGGATTTGGGAGTGTCAGACTCTGTATA 1073 Query 1218 TGTACTCTTCTTTTCTGGATTCTTGGAAACTCTATTTTACTTCAAGATTCTGCCGTTTAC 1277 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1074 CGTACTCTTCTTTTCTGGATTCTTGGAAACTCTCTTTTACTTCAAGATTCTGCCGTTCAC 1133 Query 1278 TGTCTTGATGGCTCGTCTCTGTCCTCCTGGATGTGAAGGGTCTCTCATGGCATTTGTCAT 1337 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 CGTCTTGATGGCCCGTCTCTGTCCTCCTGGATGTGAAGGGTCTCTCATGGCATTTGTCAT 1193 Query 1338 GTCAGCCATTGCTCTTGCATTCATAGTTAGCGGATATCTTGGAATCGTTCTTGCATCGTT 1397 |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| || Sbjct 1194 GTCAGCCATTGCACTTGCATTCATAGTTAGCGGATATCTTGGAATCATTCTCGCATCATT 1253 Query 1398 TGTCGGTGTAACAGAGGATGATTTCTCGGGGTTTACTCGCGGACTCGCTATAGAAGCGTG 1457 |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1254 TGTCGGTGTAACAGTGGATGATTTCTCGGGGTTTACTCGTGGACTCGCTATAGAAGCGTT 1313 Query 1458 CTGCGTTGGGATTCCGTTGATCTTAACTTCTTGGATATATGATGAAGCGGAAACAAAAGA 1517 |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || Sbjct 1314 CTGCGTTGGGATTCCGTTGATCTTAACTTCGTGGATATATAATGAAGCGGAAACAAAGGA 1373 Query 1518 GAAGAGTAAAAAGATAGAGTGAGTTCATTTGGGTTAATGTGTACTTTGTATATCTTTGTG 1577 ||| |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| Sbjct 1374 GAAAAGTAAAAAGATAGAATGAGTTCATTCGGGTTAAAGTGTACTTTGTATATCTTTGTG 1433 Query 1578 ACATTCTTGTGATTTGA-GGTTTTTCGTAGTCTCTCTCATTG 1618 ||||||||||| ||| | ||||| ||||||||||||| ||| Sbjct 1434 ACATTCTTGTGGTTTTAAGGTTT--CGTAGTCTCTCTCTTTG 1473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66581748260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5