BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65060.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315469 jgi|Araly1|315469|fgenesh1_pm.C_scaffold_2000502 2737 0.0
> Ahg315469 jgi|Araly1|315469|fgenesh1_pm.C_scaffold_2000502
Length=1704
Score = 2737 bits (1482), Expect = 0.0
Identities = 1634/1705 (96%), Gaps = 20/1705 (1%)
Strand=Plus/Plus
Query 46 ATGATCACTGCAGCTCTACACGAACCTCAGATTCACAAACCAACCGATACATCCGTCGTC 105
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATAACTGCAGCTCTACACGAACCTCAGATTCACAAACCAACCGATACATCCGTCGTC 60
Query 106 TCCGATGATGTGC-T--TCCTCAT--T-CT---CCTCCTACGCCTCGCATTTTCCGGTCA 156
|||| ||| ||| | ||||| | | || ||||||| |||||||||||||||||||
Sbjct 61 TCCGGCGATATGCTTCCTCCTCCTCCTCCTCCACCTCCTATGCCTCGCATTTTCCGGTCA 120
Query 157 AAGCTTCCGGACATTGACATCCCTAACCACCTCCCTCTCCACACTTACTGCTTCGAAAAA 216
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 AAGCTTCCGGACATTGACATCCCTAACCACCTACCTCTCCACACTTACTGCTTCGAAAAA 180
Query 217 CTCTCATCTGTTTCCGACAAGCCTTGTCTCATCGTTGGCTCCACCGGGAAAAGCTACACC 276
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 181 CTCTCATCTGTTTCCGACAAGCCTTGTCTCATTGTTGGCTCCACCGGAAAAAGCTATACC 240
Query 277 TACGGCGAAACACACCTAATCTGTCGGAGAGTCGCTTCCGGGTTATACAAGTTAGGTATC 336
||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 241 TACAGCGAAACACACCTAATCTGCCGGAGAGTCGCTTCCGGATTATACAAGTTAGGTATC 300
Query 337 AGAAAAGGTGACGTCATCATGATCCTTCTCCAAAACTCAGCCGAGTTCGTTTTCTCCTTC 396
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 AGAAAAGGTGACGTCATCATGATCCTTCTCCAAAACTCAGCCGAGTTCGTCTTCTCCTTC 360
Query 397 ATGGGTGCTTCCATGATCGGAGCCGTCTCAACCACCGCAAACCCTTTCTACACTTCTCAA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 ATGGGTGCTTCCATGATCGGAGCCGTCTCAACCACCGCAAACCCTTTCTACACTTGTCAA 420
Query 457 GAGCTTTATAAACAGCTTAAATCTTCCGGAGCCAAACTCATAATCACTCACTCTCAATAC 516
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 GAGATTTATAAACAGCTTAAATCTTCCGGAGCTAAACTCATAATCACTCACTCTCAATAC 480
Query 517 GTCGATAAACTTAAAAACCTCGGAGAAAACCTCACGCTGATCACTACCGATGAACCAACA 576
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 481 GTCGATAAACTTAAAAACCTCGGAGAAAACCTCACGGTGATCACCACCGATGAACCAACA 540
Query 577 CCGGAGAATTGTCTACCATTCTCGACACTCATCACCGACGACGAAACAAACCCATTTCAA 636
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 541 CCGGAGAATTGTCTACCATTCTCAACACTCATCACCGACGACGAGACAAACCCATTTCAA 600
Query 637 GAAACCGTCGATATCGGCGGTGACGATGCGGCGGCG-TTACCATTCTCATCGGGAACAAC 695
|||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 601 GAAACCGTAGATATTGGCGGTGACGATGCGGCGGCGCTT-CCATTCTCATCGGGAACAAC 659
Query 696 AGGGTTACCAAAAGGAGTTGTTTTGACACACAAGAGCTTAATCACAAGCGTTGCACAACA 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGGTTACCAAAAGGAGTTGTTTTGACACACAAGAGCTTAATCACAAGCGTTGCACAACA 719
Query 756 AGTAGATGGAGATAACCCAAATCTTTACCTCAAATCAAACGACGTCATACTCTGCGTTTT 815
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 AGTAGATGGAGATAACCCAAATCTTTACCTCAAATCAAACGACGTCCTACTCTGCGTTTT 779
Query 816 ACCACTTTTCCATATCTACTCTCTCAATAGCGTCCTCCTCAATTCACTCCGATCCGGCGC 875
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 780 ACCACTTTTCCATATCTACTCTCTTAATAGCGTCCTCCTCAATTCACTCCGATCCGGTGC 839
Query 876 CACGGTTCTTTTAATGCATAAGTTTGAGATCGGTGCGTTATTGGATCTTATTCAAAGACA 935
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 CACGGTTCTTTTAATGCATAAGTTTGAGATCGGTGCGCTATTGGATCTTATTCAAAGACA 899
Query 936 TAGAGTGACAATAGCGGCGCTTGTACCGCCGCTAGTGATCGCTCTAGCTAAAAACCCGAC 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TAGAGTGACAATAGCGGCGCTTGTACCGCCGCTAGTGATCGCTCTAGCTAAAAACCCGAC 959
Query 996 GGTTAATTCTTATGATCTCTCCTCCGTTAGATTCGTTCTTTCCGGTGCAGCTCCTTTAGG 1055
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 960 TGTTAACTCTTATGATCTCTCCTCCGTTAGATTGGTTCTCTCCGGTGCAGCTCCTTTAGG 1019
Query 1056 TAAAGAACTTCAAGATAGTCTTCGTCGCCGTCTCCCTCAAGCCATCCTTGGCCAGGGATA 1115
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TAAAGAACTTCAAGATAGTCTCCGTCGCCGTCTCCCTCAAGCCATCCTTGGCCAGGGATA 1079
Query 1116 TGGTATGACGGAGGCAGGACCAGTGTTGTCAATGAGCCTTGGGTTCGCTAAAGAACCGAT 1175
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGTATGACGGAAGCAGGACCAGTGTTGTCAATGAGCCTTGGGTTCGCTAAAGAACCGAT 1139
Query 1176 ACCGACAAAATCAGGTTCATGTGGGACTGTGGTCCGAAACGCAGAGCTTAAAGTGGTTCA 1235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GCCGACAAAATCAGGTTCATGTGGGACTGTGGTCCGAAACGCAGAGCTTAAAGTGGTTCA 1199
Query 1236 CCTTGAGACACGTCTCTCTCTTGGATACAACCAACCTGGTGAGATTTGTATCCGCGGTCA 1295
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1200 CCTTGAGACACGTCTCTCTCTTGGTTACAACCAACCTGGTGAGATTTGTATCCGCGGTCA 1259
Query 1296 ACAGATCATGAAAGAGTACTTGAACGATCCAGAAGCCACTTCAGCAACAATAGACGAAGA 1355
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1260 ACAAATCATGAAAGAGTACTTGAACGACCCAGAAGCCACTTCAGCAACAATAGACGAAGA 1319
Query 1356 AGGTTGGCTTCACACAGGAGACATTGGATATGTTGATGAAGATGATGAGATTTTCATTGT 1415
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1320 AGGTTGGCTTCACACAGGAGACATTGGGTATGTTGACGAAGATGATGAGATCTTCATTGT 1379
Query 1416 TGATCGACTTAAAGAAGTCATCAAGTTCAAAGGCTTTCAGG---------TCCCTCCAGC 1466
||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1380 TGATCGACTTAAAGAAGTCATCAAGTTCAAAGGCTTTCAGGCAAAACAGGTCCCTCCGGC 1439
Query 1467 TGAGCTAGAGAGTTTGCTAATCAATCACCATTCAATTGCCGATGCAGCTGTTGTTCCGCA 1526
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1440 TGAGCTAGAGAGTTTGCTAATCAATCATCATTCAATTGCGGATGCTGCTGTTGTTCCGCA 1499
Query 1527 AAATGATGAAGTCGCTGGGGAAGTTCCGGTGGCTTTCGTGGTGCGATCAAATGGAAATGA 1586
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AAACGATGAAGTCGCTGGGGAAGTTCCGGTGGCTTTCGTGGTGCGATCAAATGGAAATGA 1559
Query 1587 TATCACTGAAGAAGATGTTAAAGAATATGTTGCCAAACAGGTGGTGTTCTATAAGAGATT 1646
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TATCACTGAAGAAGATATTAAAGAATATGTTGCCAAACAGGTGGTGTTCTATAAGAGATT 1619
Query 1647 GCACAAGGTCTTCTTTGTTGCTTCCATTCCTAAATCTCCTTCGGGAAAAATACTAAGAAA 1706
||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1620 GCACAAGGTTTTCTTTGTTGCTTCCATTCCTAAATCTCCTTCTGGAAAAATTCTGAGAAA 1679
Query 1707 GGACCTCAAAGCTAAGCTTTGTTGA 1731
||||||||||||||| |||||||||
Sbjct 1680 GGACCTCAAAGCTAAACTTTGTTGA 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5