BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65090.2
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338601 jgi|Araly1|338601|fgenesh1_pg.C_scaffold_2000700 1085 0.0
> Ahg338601 jgi|Araly1|338601|fgenesh1_pg.C_scaffold_2000700
Length=981
Score = 1085 bits (587), Expect = 0.0
Identities = 682/726 (94%), Gaps = 13/726 (2%)
Strand=Plus/Plus
Query 148 ATGGAGGAATATCAGTCTAATGAGAGTGAAGATAAAAGAAGTTGGATTTGGAGTAAGGCG 207
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAATATCAGTCTAATGAGAGTGAAGACAAAAGAAGTTGGATTTGGAGTAAGGCG 60
Query 208 GTAAGTGTTGGGAAGAAAGTTCTGACAGCTGGTGTTGTAGTGTCTTCAGCTCCACTTCTT 267
||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GTAAGCGTTGGGAAGAAGGTTCTGACAGCTGGTGTTATAGTGTCTTCAGCTCCACTTCTT 120
Query 268 GTTCCTTCACTTTTTGTCGCCTCGAC-ACTTGCCTTCCTCTCCTCGGTTCCGTTTTGTCT 326
|||||||||||||||||||||||||| | | |||||||||||||||||||| |||||| |
Sbjct 121 GTTCCTTCACTTTTTGTCGCCTCGACTA-TCGCCTTCCTCTCCTCGGTTCCTTTTTGTTT 179
Query 327 CTTCTTGGCTAATTATGCTTGTACACAAAAGGTCATGAGTACTCTGCTTCCTGATACTGA 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTCTTGGCTAATTATGCTTGTACACAAAAGGTCATGAGTACTCTGCTTCCTGATACTGA 239
Query 387 AGAAACTGGTGGAGTTGGCAAGGAGGATGATGACGAATCTGGATTTGATGAGTATAGCAA 446
|||||| |||||||||| | | |||||||||| |||||| ||||||||||||| |||||
Sbjct 240 AGAAACAGGTGGAGTTGAC-A--AGGATGATGATGAATCTAGATTTGATGAGTACAGCAA 296
Query 447 GATTGGTCACGGTGAAGGCGCGGCTGGAGTTGGTGAGGCTGCACTTTTCAGGGGTAAAGA 506
|||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||| ||
Sbjct 297 GATTGGTCACCGTGAAGGTGCGGCTGAAGTTGGTGAGGGTGCACTTTTCATGGGTACGGA 356
Query 507 AGAACCCATTCCCATTCAGGTTAAGGAAGATGAGGAGATGGCGAAAGAGTCAACGAGCTT 566
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 357 AGAACCCATTCCCATTCAGGTTAAGGAAGATGAGGAGATGGTGAAAGAGTCAACGAGCTT 416
Query 567 GCTAGAGAAAATTAGGGATGAGGGTAGAACTGACAAAGAAACCTCTGAG--AGAACTTTA 624
||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||
Sbjct 417 GCTAGAGAAAATTAGGGATGAGGGTAGAACTGACAGAGAAACCTCTGAGAAAGAA--TTA 474
Query 625 CAAGATGATAAAAAGTCCGGAAATGCTAAGTCAGAGGAGGTTCAAGAACAGCCTGAAAAG 684
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 CAAGATGATAAAAATTCCGGAAATGCCAAGTCAGAGGAGGTTCAAGAACAGCCTGAAAAG 534
Query 685 CGGGAAGCGCCTGAGACTAGACGTGAAGGGGAAAC-TGGGGCTACAAAAATTGAAACTTC 743
|||||||||||||||||| |||||||||||| ||| |||||| ||||||| |||||||||
Sbjct 535 CGGGAAGCGCCTGAGACTGGACGTGAAGGGG-AACTTGGGGCCACAAAAACTGAAACTTC 593
Query 744 TACGGGCAAGGACGATGAGGAAA-TATCTTCTAATGAGCCAATAGACCAAGCTAGTGGGG 802
||||||||||| || ||||||| | ||||| |||||||| |||||||||||||||||||
Sbjct 594 AACGGGCAAGGATGACGAGGAAACT-TCTTCGAATGAGCCGATAGACCAAGCTAGTGGGG 652
Query 803 CACAAGGAACCGGGgaagagaaacgaaaaaacacaactaagaaaaagaagaaaacCGGGC 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CACAAGGAACCGGGGAAGAGAAACGAAAAAACACAACTAAGAAAAAGAAGAAAACCGGGC 712
Query 863 GTGCAG 868
||||||
Sbjct 713 GTGCAG 718
Score = 381 bits (206), Expect = 7e-105
Identities = 248/268 (93%), Gaps = 3/268 (1%)
Strand=Plus/Plus
Query 1008 AGCTAGTGTCAAAATGAGCCGAATATGTATGGTTTTGAATTTGCAGGTGTATAGTGAGGA 1067
|||||||||| ||| | || ||||||||||| |||| ||||||||||||||||||| ||
Sbjct 717 AGCTAGTGTC-AAA-G-TCCAAATATGTATGGCTTTGGATTTGCAGGTGTATAGTGAAGA 773
Query 1068 GCAACTATGGGAGACGATGGAGACTTTGAGGAAAGTAGTAGGATACAGTGTTGCAAGGAG 1127
|||| ||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 774 GCAAATATGGGAGAAGATGGAGACGTTGAGGAAGGTAGTAGGATACAGTGTTGCAAGCAG 833
Query 1128 TGCCACATGTGCAGAGGAGTTAAAGGCTCTCTATGTCTTCACCGGTGTAGTGGAGCCACC 1187
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 834 TGCCACATGCGCAGAGGAGTTAAAGGCTCTCTATGTCTTCACCGGCGTGGTGGAGCCACC 893
Query 1188 TCGCTCAAGCTTAAACCAGGACACTTATGATATTGCACATCTTACTATTAGACTTCGCTT 1247
|| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 894 TCACTCAAGCTTAAACCATGACACTCATGATATCGCACATCTTACTATTAGACTTCGCTT 953
Query 1248 CCTCATGTCTGTTATCGGAATAAACTAG 1275
||||||||||||||||||||||||||||
Sbjct 954 CCTCATGTCTGTTATCGGAATAAACTAG 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5