BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65260.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925420 jgi|Araly1|925420|scaffold_200981.1 1724 0.0
Ahg907920 jgi|Araly1|907920|Al_scaffold_0002_1001 579 2e-164
Ahg907902 jgi|Araly1|907902|Al_scaffold_0002_983 556 1e-157
Ahg925581 jgi|Araly1|925581|scaffold_201142.1 217 2e-55
> Ahg925420 jgi|Araly1|925420|scaffold_200981.1
Length=1032
Score = 1724 bits (933), Expect = 0.0
Identities = 999/1029 (97%), Gaps = 11/1029 (1%)
Strand=Plus/Plus
Query 62 CGCCATTGAAATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCTCCGTCC 121
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 11 CGCCATTGAAATGGCTCTCAAAGCTTCACCAGTTGCCGGATTATTCCCTCCTCTCCGTCC 70
Query 122 TACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGATTCT-CC 180
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 71 TACTGCTTCTTCTTCTCCTTCGA---CTTCTAATCGCCCTTGTTCCCTCAGGGTTCTACC 127
Query 181 CTCTCAGAACATCTTTCTTCGGTAACTCAAGTGGAGCGCTGAGAGTGAATGTG-TTGAGA 239
| |||||| |||| |||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 128 C-CTCAGACCATCCTTCTTCGGTAACTCCAGTGGAGCGCTGAGAGTGAATGTGCTT-AGA 185
Query 240 TTAGCTTGTG-ATAATAGACTCAGGTGCAATGGTCATGGTGCTACTATGAATCTTTTTGA 298
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 186 TTAGCTTGTGCA-AATAGACTCAGGTGCAATGGTCATGGTGCTACAATGAATCTTTTTGA 244
Query 299 ACGATTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCTTTTGAAGACCC 358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 245 ACGATTTTCTAGAGTGGTCAAGTCATATGCCAATGCGCTCATAAGCTCTTTTGAAGACCC 304
Query 359 GGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCGTCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCGTCA 364
Query 419 AGCCACTGCACAGGTTTTAGCATCACAAAAGCAGTTACAGAACAAATATAAAGCTGCACA 478
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 365 AGCCACTGCACAGGTTTTAGCATCACAAAAGCAGTTGCAGAACAAATATAAAGCGGCACA 424
Query 479 GCAGTCTTCTGATGATTGGTACAAAAGAGCACAACTTGCTCTTGCAAAAGGAGATGAGGA 538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 425 GCAGTCTTCTGATGATTGGTACAAAAGGGCACAACTTGCTCTTGCAAAAGGAGATGAGGA 484
Query 539 TCTTGCACGTGAGGCCCTTAAACGACGAAAGTCTTTTGCTGACAACGCTACTGCTTTGAA 598
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 485 TCTTGCACGTGAGGCCCTTAAACGACGAAAGTCTTTTGCTGACAACGCAAGTGCTCTGAA 544
Query 599 AACTCAACTAGATCAGCAAAAAGGTGTTGTCGACAATCTTGTTTCAAATACAAGGCTCTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AACTCAACTAGATCAGCAAAAAGGTGTTGTCGACAATCTTGTTTCAAATACAAGGCTCTT 604
Query 659 GGAGAGTAAGATACAAGAGGCAAAAGCAAAGAAAGATACGCTCCTTGCACGTGCTCGCAC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GGAGAGTAAGATACAAGAGGCAAAAGCAAAGAAAGATACGCTCCTTGCACGTGCTCGCAC 664
Query 719 TGCTAAGACTGCAACCAAAGTGCAAGAGATGATAGGGACAGTAAATACAAGCGGTGCTCT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TGCTAAGACTGCAACCAAAGTGCAAGAGATGATAGGGACAGTAAATACAAGCGGTGCTCT 724
Query 779 TTCAGCTTTTGAGAAAATGGAGGAGAAAGTTATGGCTATGGAGTCTGAAGCAGATGCACT 838
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 725 TTCAGCTTTTGAGAAAATGGAGGAGAAAGTGATGGCTATGGAGTCTGAAGCAGATGCACT 784
Query 839 AACTCAGATTGGAACCGATGAACTCGAGGGGAAGTTTCAAATGCTTGAAACTTCATCTGT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AACTCAGATTGGAACCGATGAACTCGAGGGGAAGTTTCAAATGCTTGAAACTTCATCTGT 844
Query 899 GGATGATGATCTTGCAGA-CTTGAAGAAAGAATTGTCTGGAAGCTCAAAGAAAGGAGAGC 957
||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 845 GGATGATGATCTTGC-GAACTTGAAGAAAGAATTGTCCGGAAGCTCAAAGAAAGGAGAGC 903
Query 958 TTCCTCCAGGGAGAAGCACTGTTGCAGCAAGCACGAGATACCCTTTCAAAGACTCAGAGA 1017
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TTCCTCCAGGGAGAAGCACCGTTGCAGCAAGCACGAGATACCCTTTCAAAGACTCAGAGA 963
Query 1018 TCGAGAATGAGTTAAACGAACTGCGAAGGAAAGCTAACGACTTTTAGATATCGGCTGTTT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TCGAGAATGAGTTAAACGAACTGCGAAGGAAAGCTAACGACTTTTAGATATCGGCTGTTT 1023
Query 1078 CCGAATTGT 1086
|||| ||||
Sbjct 1024 CCGAGTTGT 1032
> Ahg907920 jgi|Araly1|907920|Al_scaffold_0002_1001
Length=465
Score = 579 bits (313), Expect = 2e-164
Identities = 357/378 (94%), Gaps = 3/378 (1%)
Strand=Plus/Plus
Query 56 CGAAATCGCCATTGAAATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCT 115
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 9 CGAAATTGCCATTGAAATGGCTCTCAAAGCTTCACCAGTTGCCGGATTATTCCCTCCTCT 68
Query 116 CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGAT 175
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 69 CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCT---AATCGCCCTTGTTCCCTCAGGGT 125
Query 176 TCTCCCTCTCAGAACATCTTTCTTCGGTAACTCAAGTGGAGCGCTGAGAGTGAATGTGTT 235
|||||| |||||| |||| |||||||||||||| ||||| || ||||||||||||||| |
Sbjct 126 TCTCCCCCTCAGACCATCCTTCTTCGGTAACTCCAGTGGGGCTCTGAGAGTGAATGTGCT 185
Query 236 GAGATTAGCTTGTGATAATAGACTCAGGTGCAATGGTCATGGTGCTACTATGAATCTTTT 295
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 186 GAGATTAGCTTGTGCTAATAGACTCAGGTGCAATGGTCACGGTGCTACGATGAATCTTTT 245
Query 296 TGAACGATTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCTTTTGAAGA 355
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 246 TGAACGGTTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCCTTCGAAGA 305
Query 356 CCCGGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCG 415
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 306 CCCGGAGAAAATCCTGGAGCAAACTGTCATTGAAAAGAATAGTGATTTGACAAAGATGCG 365
Query 416 TCAAGCCACTGCACAGGT 433
||||||||||||||||||
Sbjct 366 TCAAGCCACTGCACAGGT 383
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 552 GCCCTTAAACGACGAAAGTCTTTTGCTG 579
||||||||||||||||||||||||||||
Sbjct 387 GCCCTTAAACGACGAAAGTCTTTTGCTG 414
> Ahg907902 jgi|Araly1|907902|Al_scaffold_0002_983
Length=486
Score = 556 bits (301), Expect = 1e-157
Identities = 353/378 (93%), Gaps = 3/378 (1%)
Strand=Plus/Plus
Query 56 CGAAATCGCCATTGAAATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCT 115
|||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 78 CGAAATTGCCATTGAAATGGCTCTCAAAGCTTCACCAGCTGCCGGATTATTCCCTCCTCT 137
Query 116 CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGAT 175
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 138 CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCT---AATCGCCCTTATTCCCTCAGGGT 194
Query 176 TCTCCCTCTCAGAACATCTTTCTTCGGTAACTCAAGTGGAGCGCTGAGAGTGAATGTGTT 235
|||||| |||||| |||| |||||||||||||| ||||| || ||||||||||||||| |
Sbjct 195 TCTCCCCCTCAGACCATCCTTCTTCGGTAACTCCAGTGGGGCTCTGAGAGTGAATGTGCT 254
Query 236 GAGATTAGCTTGTGATAATAGACTCAGGTGCAATGGTCATGGTGCTACTATGAATCTTTT 295
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 255 GAGATTAGCTTGTGCTAATAGACTCAGGTGCAATGGTCACGGTGCTACGATGAATCTTTT 314
Query 296 TGAACGATTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCTTTTGAAGA 355
|||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 315 TGAACGGTTTTCTAGAGTGGTCAAGTCATATGCAAATGCGTTCATAAGCTCCTTCGAAGA 374
Query 356 CCCGGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCG 415
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 375 CCCGGAGAAAATCTTGGAGCAAACTGTCATTGAAAAGAATAGTGATTTGACAAAGATGCG 434
Query 416 TCAAGCCACTGCACAGGT 433
||||||||||||||||||
Sbjct 435 TCAAGCCACTGCACAGGT 452
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 552 GCCCTTAAACGACGAAAGTCTTTTGCTG 579
||||||||||||||||||||||||||||
Sbjct 456 GCCCTTAAACGACGAAAGTCTTTTGCTG 483
> Ahg925581 jgi|Araly1|925581|scaffold_201142.1
Length=229
Score = 217 bits (117), Expect = 2e-55
Identities = 145/158 (92%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 56 CGAAATCGCCATTGAAATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCT 115
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 5 CGAAATCGCCATTGAAATGGCTCTCAAAGCTTCACCAGCTGCCGGATTATTCCCTCCTCT 64
Query 116 CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGAT 175
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 65 CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCT---AATCGCCCTTGTTCGCTCAGGGT 121
Query 176 TCTCCCTCTCAGAACATCTTTCTTCGGTAACTCAAGTG 213
|||||| || ||| |||| |||||||||||||| ||||
Sbjct 122 TCTCCCCCTTAGACCATCCTTCTTCGGTAACTCCAGTG 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5