BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65430.1
Length=2048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925609 jgi|Araly1|925609|scaffold_201170.1 2861 0.0
Ahg932434 jgi|Araly1|932434|scaffold_400422.1 233 3e-60
Ahg945049 jgi|Araly1|945049|scaffold_701278.1 222 7e-57
Ahg909243 jgi|Araly1|909243|Al_scaffold_0002_2324 217 3e-55
> Ahg925609 jgi|Araly1|925609|scaffold_201170.1
Length=1745
Score = 2861 bits (1549), Expect = 0.0
Identities = 1681/1746 (96%), Gaps = 3/1746 (0%)
Strand=Plus/Plus
Query 58 TCGAGAAGAAGAGAATCTCAATGGAAGCTGATGACGATTTCTACAGCGGCACCGAAAACT 117
|||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCGAGAAGAAAAAAATCTCAATGGATGCTGATGACGATTTCTACAGCGGCACCGAAAACT 60
Query 118 ACTCCGATTACGCCGACTCCGACGAAGATGACGCCGACGGCGAGTACGAGTTCGTTGACG 177
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 61 ACTCCGATTACGCCGACTCCGACGAAGATGACGCCGACGCCGATTACGAGTTCGTTGAAG 120
Query 178 ACGCTGCTGATGATTCCGATGACCTTATCTTCCGTCGCCGCCAGCAAAATTATAGTGTGT 237
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 ACGCCGCTGATGATTCCGATGACCTTATCTTCCGCCGCCGCCAGCAAAATTATAGTGTGT 180
Query 238 TAAGCGAAGCAGATATTTGTAAGCTTCAAGAAGATGATATTTCAAGGATTTCTACTGTTT 297
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 TAAGCGAGGCAGATATTTGTAAGCTTCAAGAAGACGATATTTCAAGGATTTCTACTGTTT 240
Query 298 TGTCCATTTCGAGGAATTCATCTGCGATCCTGCTTCGTCACTACAATTGGTGTGTGAGCA 357
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTCCATTTCGAGGAATTCTTCTGCGATCCTGCTTCGTCACTACAATTGGTGTGTGAGCA 300
Query 358 GAGTTCATGATGAATGGTTTGCTGATGAGGAAAAGGTTCGAGATGCTGTTGGTTTATTAG 417
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 301 GAGTTCATGATGAATGGTTTGCTGATGAGGAAAAGGTTCGAGATGCTGTTGGCTTGTTGG 360
Query 418 AGAAACCTGTTGTTGATTTCCCAACTGATGGAGAACTTGATTGTGGAATTTGTTTTGAGA 477
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 AGAAACCTGTTGTTGATTTCCCAACTGATGGAGAACTTGAATGTGGAATTTGTTTTGAGG 420
Query 478 CTTTCCTTTCTGACAAATTGCATGCTGCTGCTTGTGGTCATCCATTCTGCGACTCATGTT 537
||||||||| |||||||||||||||||||||||||||||| || || ||||| ||||| |
Sbjct 421 CTTTCCTTTGTGACAAATTGCATGCTGCTGCTTGTGGTCACCCGTTTTGCGATTCATGCT 480
Query 538 GGGAAGGTTATATCACCACAGCGATTAATGATGGTCCAGGGTGTCTTACATTACGATGTC 597
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 GGGAAGGTTATATCACCACCGCGATTAATGATGGTCCAGGGTGTCTTACGTTACGATGTC 540
Query 598 CAGATCCTTCTTGCAGAGCTGCTGTTGGTCAGGATATGATCAATTTGCTAGCTCCTGATA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAGATCCTTCTTGCAGAGCTGCTGTTGGTCAGGATATGATCAATTTGCTAGCTCCTGATA 600
Query 658 AAGATAAG-CAAAAGTACACTAGTTATTTTGTCAGATCATACGTTGAAGACAATAGAAAG 716
||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 AAGAT-AGCCAGAAGTACACTAGTTATTTTGTCAGATCATACGTCGAAGACAATAGAAAG 659
Query 717 ACCAAGTGGTGTCCCGCTCCTGGCTGTGACTATGCTGTAAATTTTGTTGTTGGAAGTGGT 776
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 660 ACCAAGTGGTGTCCCGCTCCTGGCTGTGACTACGCTGTAAACTTTGTTGTTGGGAGTGGT 719
Query 777 AATTATGATGTGAATTGTCGCTGCTGTTACAGTTTCTGCTGGAATTGTGCTGAAGAAGCT 836
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 AATTATGATGTGAATTGTCGCTGTTGTTACAGTTTCTGCTGGAATTGTGCTGAAGAAGCT 779
Query 837 CACCGTCCTGTAGATTGTGACACTGTTTCTAAGTGGGTATTGAAGAATAGTGCTGAGTCG 896
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 780 CACCGTCCTGTAGATTGTGACACTGTTTCTAAGTGGGTGTTGAAGAATAGCGCTGAGTCT 839
Query 897 GAGAATATGAATTGGATTTTGGCAAATTCCAAGCCCTGTCCAAAATGCAAACGGCCAATA 956
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGAATATGAATTGGATTTTGGCCAATTCCAAGCCCTGTCCAAAATGCAAACGGCCAATA 899
Query 957 GAGAAAAACCAGGGTTGTATGCATATTACGTGCACCCCACCATGTAAATTTGAGTTCTGC 1016
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 900 GAGAAAAACCAGGGTTGTATGCATATAACGTGCACCCCGCCATGTAAATTTGAATTCTGC 959
Query 1017 TGGCTTTGCCTTGGGGCGTGGACAGAGCATGGTGAGAAGACAGGTGGCTTTTATGCTTGT 1076
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGCTTTGCCTTGGAGCGTGGACAGAGCATGGTGAGAAGACAGGTGGCTTTTATGCTTGT 1019
Query 1077 AACCGTTATGAAGCAGCAAAGCAAGATGGCATTTATGATGAGACTGAAAAACGCCGAGAG 1136
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AACCGTTATGAAGCAGCGAAGCAAGATGGCATTTATGATGAGACTGAAAAACGCCGAGAG 1079
Query 1137 ATGGCAAAGAACTCTCTTGAGAGATATACCCACTACTATGAGAGATGGGCAACCAATCAA 1196
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1080 ATGGCAAAGAACTCTCTTGAGAGATATACCCACTACTATGAAAGATGGGCGACCAATCAA 1139
Query 1197 TCGTCTAGGCAAAAGGCGCTGCTGGATCTTAAGAAGATGCAAACAGATGATATTGAGAAG 1256
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1140 TCGTCTAGGCAAAAGGCGCTGGTGGATCTTGAGAAGATGCAAACAGATGATATTGAGAAG 1199
Query 1257 CTCAGTGACATACAGTGTCAGCCTGAATCACAACTGAAGTTCATTATAGAAGCATGGTTA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTCAGTGACATACAGTGTCAGCCTGAATCACAACTGAAGTTCATTATAGAAGCATGGTTA 1259
Query 1317 CAGATAGTTGAATGCAGACGAGTTCTAAAATGGACATATGCCTATGGTTTTTACATACCT 1376
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAGATAGTCGAATGCAGACGAGTTCTAAAATGGACATATGCCTATGGTTTTTACATACCT 1319
Query 1377 GACCAGGAGCATGGAAAAAGAGTGTTTTTTGAGTACTTGCAAGGCGAAGCTGAGTCGGGC 1436
||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1320 GACCACGAGCACGGAAAAAGAGTGTTTTTTGAGTACTTACAAGGTGAAGCTGAGTCGGGC 1379
Query 1437 CTTGAACGACTTCATCAATGTGCTGAAAAAGAGCTGCTACCATACTTAGATGCCAAAGGT 1496
|||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |
Sbjct 1380 CTTGAACGGCTTCATCAATGTGCTGAAAAAGAGCTGCAACCATACATAGATGCCAAAGAT 1439
Query 1497 CCAAGTGAAGATTTTAATGAATTCCGCACAAAACTGGCAGGTTTAACAAGTGTTACCAAA 1556
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CCAAGTGAAGATTTTAATGAGTTCCGCACAAAACTGGCAGGTTTAACAAGTGTTACCAAA 1499
Query 1557 AACTATTTTGAGAACTTGGTTAGAGCGCTGGAGAATGGGCTATCGGATGTGAACTCGCAT 1616
||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 1500 AACTATTTTGAGAACTTGGTTCGAGCACTGGAGAATGGGCTATCGGATGTGAGCTCGCAT 1559
Query 1617 GATGCATATGATCGAACTTCAAGTTCAAAGAGCTTAGGGGGGAAGACTAAGGGATCGAGT 1676
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1560 GATGCATATGATCGAACCTCAAGTTCAAAGAGCTTAGGTGGGAAGACTAAGGGATCGACT 1619
Query 1677 TCTAAAGCCAGCAGCTCCGATTCAAGCCATTGGCCTTGTGAATATTGCACTTACGTAAAT 1736
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1620 TCTAAAGCCAGCAGCTCCGATTCAAGCCATTGGTCTTGTGAATATTGCACTTATGTAAAT 1679
Query 1737 CCAAGGTCGACCACCATTTGCCAAATGTGTGAACATGGCCGGTGAAATGCCAG-AAACTG 1795
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1680 CCAAGGTCGACCACCATTTGCCAAATGTGTGAACATGGCCGGTGAAATGTCAGCAAACTG 1739
Query 1796 GCATTA 1801
||||||
Sbjct 1740 GCATTA 1745
> Ahg932434 jgi|Araly1|932434|scaffold_400422.1
Length=331
Score = 233 bits (126), Expect = 3e-60
Identities = 150/162 (93%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 60 GAGAAGAAGAGAATCTCAATGGAAGCTGATGACGATTTCTACAGCGGCACCGAAAACTAC 119
||| |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3 GAGTAGAAAAAAATCTCAATGGATGCTGATGACGATTTCTACAGCGGCACCGAAAACTAC 62
Query 120 TCCGATTACGCCGACTCCGACGAAGATGACGCCGACGGCGAGTACGAGTTCGTTGACGAC 179
||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||| |||
Sbjct 63 TCCGATTACGCTGACTCCGACGAAGATGATGCCGACGCCGATTACGAGTTCGTTGAAGAC 122
Query 180 GCTGCTGATGATTCCGATGACCTTATCTTCCGTCGCCGCCAG 221
|| ||||||||||||||||||||||||||| | |||||||||
Sbjct 123 GCCGCTGATGATTCCGATGACCTTATCTTCTGCCGCCGCCAG 164
> Ahg945049 jgi|Araly1|945049|scaffold_701278.1
Length=328
Score = 222 bits (120), Expect = 7e-57
Identities = 148/162 (91%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 60 GAGAAGAAGAGAATCTCAATGGAAGCTGATGACGATTTCTACAGCGGCACCGAAAACTAC 119
||| |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3 GAGTAGAAAAAAATCTCAATGGATGCTGATGACGATTTCTACAGCGGCACCGAAAACTAC 62
Query 120 TCCGATTACGCCGACTCCGACGAAGATGACGCCGACGGCGAGTACGAGTTCGTTGACGAC 179
||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||| |||
Sbjct 63 TCCGATTACGCTGACTCCGACGAAGATGATGCCGACGCCGATTACGAGTTCGTTGAAGAC 122
Query 180 GCTGCTGATGATTCCGATGACCTTATCTTCCGTCGCCGCCAG 221
|| ||||||||||||| |||||||||||| | |||||||||
Sbjct 123 GCCGCTGATGATTCCGCTGACCTTATCTTATGCCGCCGCCAG 164
> Ahg909243 jgi|Araly1|909243|Al_scaffold_0002_2324
Length=288
Score = 217 bits (117), Expect = 3e-55
Identities = 135/144 (94%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 78 ATGGAAGCTGATGACGATTTCTACAGCGGCACCGAAAACTACTCCGATTACGCCGACTCC 137
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATGCTGATGACGATTTCTACAGCGGCACCGAAAACTACTCCGATTACGCTGACTCC 60
Query 138 GACGAAGATGACGCCGACGGCGAGTACGAGTTCGTTGACGACGCTGCTGATGATTCCGAT 197
|||||| |||| ||||||| ||| |||||||||||||| ||||| |||||||||||||||
Sbjct 61 GACGAATATGATGCCGACGACGATTACGAGTTCGTTGAAGACGCCGCTGATGATTCCGAT 120
Query 198 GACCTTATCTTCCGTCGCCGCCAG 221
|||||||||||||| |||||||||
Sbjct 121 GACCTTATCTTCCGCCGCCGCCAG 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77018475390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5