BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65480.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925616 jgi|Araly1|925616|scaffold_201177.1 931 0.0
Ahg890129 jgi|Araly1|890129|Al_scaffold_0007_2115 473 7e-133
> Ahg925616 jgi|Araly1|925616|scaffold_201177.1
Length=568
Score = 931 bits (504), Expect = 0.0
Identities = 546/567 (96%), Gaps = 0/567 (0%)
Strand=Plus/Plus
Query 63 CTGTTTGTTCAAGATCAAAGATGTCTATAAATATAAGAGACCCTCTTATAGTAAGCAGAG 122
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTGTTTGTTTAAGATCAAAGATGTCTATAAATATAAGAGACCCTCTTATAGTAAGCAGAG 60
Query 123 TTGTTGGAGACGTTCTTGATCCGTTTAATAGATCAATCACTCTAAAGGTTACTTATGGCC 182
||||||||||| |||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 61 TTGTTGGAGACATTCTTGATCCGTTTAATAGATCGATCTCTCTAAGGGTTACTTATGGCC 120
Query 183 AAAGAGAGGTGACTAATGGCTTGGATCTAAGGCCTTCTCAGGTTCAAAACAAGCCAAGAG 242
||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||
Sbjct 121 AAAGAGAGGTGACTAATGGTTTGGATCTAAGGCCTTCTCAAGTCCAGAACAAGCCAAGAG 180
Query 243 TTGAGATTGGTGGAGAAGACCTCAGGAACTTCTATACTTTGGTTATGGTGGATCCAGATG 302
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 TTGAGATTGGTGGAGAAGACCTCAGGAACTTCTACACTTTGGTTATGGTGGATCCAGATG 240
Query 303 TTCCAAGTCCTAGCAACCCTCACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATCC 362
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCCTAGTCCTAGCAACCCTCACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATCC 300
Query 363 CTGCTACAACTGGAACAACCTTTGGCAATGAGATTGTGTGTTACGAAAATCCAAGTCCCA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGCTACAACTGGAACAACCTTTGGCAATGAGATTGTGTGTTACGAAAATCCAAGTCCCA 360
Query 423 CTGCAGGAATTCATCGTGTCGTGTTTATATTGTTTCGACAGCTTGGCAGGCAAACAGTGT 482
|||| |||||||||||| ||||| | |||||||||||||||||||| |||||||||||||
Sbjct 361 CTGCGGGAATTCATCGTATCGTGGTGATATTGTTTCGACAGCTTGGGAGGCAAACAGTGT 420
Query 483 ATGCACCAGGGTGGCGCCAGAACTTCAACACTCGCGAGTTTGCTGAGATCTACAATCTCG 542
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 ATGCACCAGGGTGGCGCCAGAACTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTCG 480
Query 543 GCCTTCCCGTGGCCGCAGTTTTCTACAATTGTCAGAGGGAGAGTGGCTGCGGAGGAAGAA 602
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 GCCTTCCCGTGGCCGCGGTTTTCTACAACTGTCAGAGGGAGAGTGGCTGCGGAGGAAGAA 540
Query 603 GACTTTAGATGGCTTCTTCCTTTATAA 629
|| ||||||||| ||||||||||||||
Sbjct 541 GAATTTAGATGGATTCTTCCTTTATAA 567
> Ahg890129 jgi|Araly1|890129|Al_scaffold_0007_2115
Length=528
Score = 473 bits (256), Expect = 7e-133
Identities = 428/511 (84%), Gaps = 12/511 (2%)
Strand=Plus/Plus
Query 98 AGAGACCCTCTTATAGTAAGCAGAGTTGTTGGAGACGTTCTTGATCCGTTT-AATAGATC 156
||||| |||||| | || | || ||||||||||| ||||||||||| ||| | ||||
Sbjct 16 AGAGATCCTCTTGTGGTGGGAAGTGTTGTTGGAGATGTTCTTGATCC-TTTCACGAGATT 74
Query 157 AATCACTCTAAAGGTTACTTATGGCCAAAGAGAGGTGACTAATGGCTTGGATCTAAGGCC 216
|| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 75 GGTCTCTCTTCGGGTCACTTATGGCCAAAGAGAGGTTACTAATGGCTTGGATCTAAGGCC 134
Query 217 TTCTCAGGTTCAAAACAAGCCAAGAGTTGAGATTGGTGGAGAAGACCTCAGGAACTTCTA 276
||||| |||| ||||| |||| ||| || ||||| ||||| ||| |||| || |||||
Sbjct 135 CTCTCAAGTTCTGAACAAACCAACAGTGGATATTGGAGGAGACGACTTCAGAAATTTCTA 194
Query 277 TACTTTGGTTATGGTGGATCCAGATGTTCCAAGTCCTAGCAACCCTCACCTCCGAGAATA 336
|| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 195 CACCTTGGTTATGGTGGATCCAGATGTGCCGAGTCCAAGCAACCCTCACCTCCGAGAATA 254
Query 337 TCTCCATTGGTTGGTGACTGATATCCCTGCTACAACTGGAACAACCTTTGGCAATGAGAT 396
|||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |
Sbjct 255 TCTCCATTGGTTGGTGACTGATATACCTGCCACAACTGGAACGGCCTTTGGCAATGA-AG 313
Query 397 TG-TGTGTTACGAAAATCCAAGTCC-CACTGCAGGAATTCATCGTGTCGTGTTTATATTG 454
|| |||| ||||| | |||| |||| | || |||||||||| ||| | ||||| |||||
Sbjct 314 TGGTGTGCTACGAGAGTCCACGTCCACCCT-CAGGAATTCACCGTATTGTGTTGGTATTG 372
Query 455 TTTCGACAGCTTGGCAGGCAAACAGTGTATGCACCAGGGTGGCGCCAGA-ACTTCAACAC 513
|| || || || || || ||||| || ||||| || ||||||||||| | | ||||||||
Sbjct 373 TTCCGGCAACTCGGAAGACAAACGGTTTATGCGCCCGGGTGGCGCCA-ACAGTTCAACAC 431
Query 514 TCGCGAGTTTGCTGAGATCTACAATCTCGGCCTTCCC-GTGGCCGCAGT-TTTCTACAAT 571
||| ||||||||||||||||||||||| || || ||| ||||| ||| | ||||| ||||
Sbjct 432 TCGTGAGTTTGCTGAGATCTACAATCTTGGTCT-CCCTGTGGCTGCA-TCTTTCTTCAAT 489
Query 572 TGTCAGAGGGAGAGTGGCTGCGGAGGAAGAA 602
|| |||||||||| |||||| ||||||||||
Sbjct 490 TGCCAGAGGGAGAATGGCTGTGGAGGAAGAA 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5