BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G65490.1

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475650 jgi|Araly1|475650|fgenesh2_kg.2__780__AT1G65490.1          538    1e-152


> Ahg475650 jgi|Araly1|475650|fgenesh2_kg.2__780__AT1G65490.1
Length=389

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 367/401 (92%), Gaps = 16/401 (4%)
 Strand=Plus/Plus

Query  40   AATATTGTCGCACTTGTGTTACCACTACTTCTTATACTTTACACTCTTTCCTCTCAAGTT  99
            |||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct  1    AATATTGTTGCACTTGTGTTACCTCTACTTCTTATACTTTTCACTCTCTCCTCTCAAGTT  60

Query  100  GAAGTCGTGGAATCTACAGGGCGCAAACTTGCGTTTTGGGGAAATCCTATCGTGTGGACT  159
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   GAAGTCGTGGAATCTACAGGGCGTAAACTTGCGTTTTGGGGAAATCCTATCGTGTGGACT  120

Query  160  CCACACTCAAATTCATGTGGAGGTTCTCCAGCATCAGTATTTGCTTCTTCCAAGTGGACG  219
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  121  CCACACTCAAATTCATGTGGAGGTTCTCCAGCATCAGTATTTTCTTCTTCCAAGTGGACG  180

Query  220  ACAGGCCGACCATGCAGACGTAGTCGTCCTCCAGGAACTAATATTCCTGTTTCTGATCAA  279
            ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  ACAGGCCAACCATGCAGACGTAGTCGTCCTCCAGGAACTAATATCCCTGTTTCTGATCAA  240

Query  280  TCTCCATAGTACTTTGAGTTTGAGTTACTCTGTGTTCGAATTTTAAAGTATATGTGGTTT  339
            ||||| ||  | |   |     |||||||||||||| ||||||| |||||| ||||||||
Sbjct  241  TCTCCCTA--A-T---A-----AGTTACTCTGTGTTAGAATTTTGAAGTATCTGTGGTTT  289

Query  340  TCTGTTTTAGTTTCGTGTCTCAACTCTCAAGTGTAGAGGAATGTTATAAACTACTATGCA  399
            |||||||||||||| ||||||||||||||||||||||||||||||||   |||||||| |
Sbjct  290  TCTGTTTTAGTTTCCTGTCTCAACTCTCAAGTGTAGAGGAATGTTATCTCCTACTATGAA  349

Query  400  -A--TGAAGGAACTAATACTTATGATGGT-ATTTTACTAAT  436
             |  ||||||||||||||||||||||||| | || ||||||
Sbjct  350  TAAATGAAGGAACTAATACTTATGATGGTCAATT-ACTAAT  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16788459160


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5