BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G65490.1 Length=464 Score E Sequences producing significant alignments: (Bits) Value Ahg475650 jgi|Araly1|475650|fgenesh2_kg.2__780__AT1G65490.1 538 1e-152 > Ahg475650 jgi|Araly1|475650|fgenesh2_kg.2__780__AT1G65490.1 Length=389 Score = 538 bits (291), Expect = 1e-152 Identities = 367/401 (92%), Gaps = 16/401 (4%) Strand=Plus/Plus Query 40 AATATTGTCGCACTTGTGTTACCACTACTTCTTATACTTTACACTCTTTCCTCTCAAGTT 99 |||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||||| Sbjct 1 AATATTGTTGCACTTGTGTTACCTCTACTTCTTATACTTTTCACTCTCTCCTCTCAAGTT 60 Query 100 GAAGTCGTGGAATCTACAGGGCGCAAACTTGCGTTTTGGGGAAATCCTATCGTGTGGACT 159 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 GAAGTCGTGGAATCTACAGGGCGTAAACTTGCGTTTTGGGGAAATCCTATCGTGTGGACT 120 Query 160 CCACACTCAAATTCATGTGGAGGTTCTCCAGCATCAGTATTTGCTTCTTCCAAGTGGACG 219 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 CCACACTCAAATTCATGTGGAGGTTCTCCAGCATCAGTATTTTCTTCTTCCAAGTGGACG 180 Query 220 ACAGGCCGACCATGCAGACGTAGTCGTCCTCCAGGAACTAATATTCCTGTTTCTGATCAA 279 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 ACAGGCCAACCATGCAGACGTAGTCGTCCTCCAGGAACTAATATCCCTGTTTCTGATCAA 240 Query 280 TCTCCATAGTACTTTGAGTTTGAGTTACTCTGTGTTCGAATTTTAAAGTATATGTGGTTT 339 ||||| || | | | |||||||||||||| ||||||| |||||| |||||||| Sbjct 241 TCTCCCTA--A-T---A-----AGTTACTCTGTGTTAGAATTTTGAAGTATCTGTGGTTT 289 Query 340 TCTGTTTTAGTTTCGTGTCTCAACTCTCAAGTGTAGAGGAATGTTATAAACTACTATGCA 399 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct 290 TCTGTTTTAGTTTCCTGTCTCAACTCTCAAGTGTAGAGGAATGTTATCTCCTACTATGAA 349 Query 400 -A--TGAAGGAACTAATACTTATGATGGT-ATTTTACTAAT 436 | ||||||||||||||||||||||||| | || |||||| Sbjct 350 TAAATGAAGGAACTAATACTTATGATGGTCAATT-ACTAAT 389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16788459160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5