BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65820.3
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475688 jgi|Araly1|475688|fgenesh2_kg.2__818__AT1G65820.1 521 3e-147
> Ahg475688 jgi|Araly1|475688|fgenesh2_kg.2__818__AT1G65820.1
Length=589
Score = 521 bits (282), Expect = 3e-147
Identities = 342/371 (92%), Gaps = 4/371 (1%)
Strand=Plus/Plus
Query 109 ATCCATGGCGGCGATTACAGAATTTCTACCAAAAGAGTACGGATATGTCGTTCTCGTCCT 168
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1 ATCAATGGCGGCGATTACTGAATTTCTACCAAACGAGTACGGATATGTCGTTCTCGTTCT 60
Query 169 CGTCTTCTACTGTTTCCTCAACCTCTGGATGGGTGCTCAAGTCGGCAGAGCTCGCAAAAG 228
|||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||
Sbjct 61 CGTCTTCTACTGTTTCCTCAACCTCTGGATGGGTTTTCAAGTCGGCGGTGCTCGTAAAAG 120
Query 229 GTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGATGCTAAGCT 288
||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 121 GTACAACGTGCCGTATCCAACTTTATATGCTATAGAATCAGAAAACAAAGATGCTAAGCT 180
Query 289 CTTCAACTGTGTTCAGAGAGGACATCAAAACTCTTTAGAG-ATGATGCCAATGTATTTCA 347
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 181 CTTCAACTGTGTTCAGAGAGGACATCAAAACTCTTTAGAGTAT-ATGCCAATGTATTTCA 239
Query 348 TACTGATGATCCTCGGTGGGATGAAGCACCCTTGTATCTGTACTGGCCTTGGTTTGCTTT 407
|| |||||||||| |||||||||||||||||||| ||| ||||||||||||| ||| |||
Sbjct 240 TATTGATGATCCTTGGTGGGATGAAGCACCCTTGCATCAGTACTGGCCTTGGCTTGTTTT 299
Query 408 ACAACGTTAGCCGATT-CTTCTACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGT 466
||| ||||| ||| || ||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 300 ACAGCGTTACCCG-TTACTTCTACTTCAAAGGCTACGCTACTGGAGATCCCATGAAGCGT 358
Query 467 CTTACGATCGG 477
|| || |||||
Sbjct 359 CTCACTATCGG 369
Score = 154 bits (83), Expect = 1e-36
Identities = 179/220 (81%), Gaps = 27/220 (12%)
Strand=Plus/Plus
Query 618 TCGTGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTTTGGTG 677
||| |||||||||||||||||| || ||||||||||||| ||||||||||||||||| |
Sbjct 366 TCGGGAAATACGGTTTCTTGGGACTGATAGGTCTGATGATCTGTACCATCTCGTTTGGCG 425
Query 678 TCACTCTGATCCTTGCTTGAGCT-ACTCGTTTC-TGGGGTTAATGATTCTCTGGTTTGCT 735
||||||| |||| |||||||| | ||||||||| |||||| || || | | |
Sbjct 426 TCACTCTTATCCGTGCTTGAG-TCACTCGTTTCAGGGGGTT--TG-----CT-G---G-T 472
Query 736 CGAAGAATATAGAACCAATGCTTGTAAGCTGTCCACAAAACTTGTGTAATACTTTAGAGT 795
| |||||| |||||||| |||||||||||||||||||||||||||||| | |
Sbjct 473 C---GAATATGGAACCAATCCTTGTAAGCTGTCCACAAAACTTGTGTAAT------G--T 521
Query 796 TTGTCACTTTTAAAAGTTTGTAATAAATCATGGCTTCATA 835
||||||||||| |||||| ||||| ||||||||||| |||
Sbjct 522 TTGTCACTTTTTAAAGTT-GTAATGAATCATGGCTTTATA 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5