BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G65870.1 Length=570 Score E Sequences producing significant alignments: (Bits) Value Ahg348875 jgi|Araly1|348875|fgenesh1_pg.C_scaffold_5002267 676 0.0 Ahg324296 jgi|Araly1|324296|fgenesh1_pm.C_scaffold_5001840 392 1e-108 > Ahg348875 jgi|Araly1|348875|fgenesh1_pg.C_scaffold_5002267 Length=930 Score = 676 bits (366), Expect = 0.0 Identities = 490/550 (89%), Gaps = 8/550 (1%) Strand=Plus/Plus Query 25 CTTCTTCCTCTGTTCTTAGCTCTTATTCTCGCAGCCACCATTACAGAATCAAAATCTTTC 84 |||||||||||||||| ||||||| || |||| ||||||||||||||||| || ||| | Sbjct 385 CTTCTTCCTCTGTTCTCAGCTCTTCTTTTCGCGGCCACCATTACAGAATCCGAAGCTTAC 444 Query 85 TCAACAACAGTGAAGGCACCATATCCAGGACATAAACCGGATAAGCTAACCCACTTACAC 144 |||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| Sbjct 445 TCAACAACAGTGAAGGCACCGTATCCAGGACATAAACCGGAGAAGCTAACCCACCTACAC 504 Query 145 TTCTACTTCCACGACATTGTCTCC-GGAGACAAACCAACCTCCGTCCAAGTCGCTAACGG 203 |||||||||||||||||| ||||| ||| ||||||||||| |||||| ||| |||| || Sbjct 505 TTCTACTTCCACGACATTATCTCCGGGA-ACAAACCAACCGCCGTCCCAGTTGCTAGGGG 563 Query 204 TCCAACCACAAACTCTTCTGCCACCGGTTTCGGTTTGGTTGCAGTCGTTGACGA-CAAAT 262 ||| | |||||||| ||||| ||| | |||| |||||||||| ||| |||||| | || Sbjct 564 TCCTGCAACAAACTCCTCTGCAACCAGCTTCGCTTTGGTTGCAATCGCTGACGATC-CAT 622 Query 263 TGACGGTCGGGCCTGAAATTACCTCAGAGGAAGTTGGGAGAGCCCAAGGAATGTATGCAT 322 ||||| | |||||||||| |||||||||||| | |||||||||||||| |||||||||| Sbjct 623 TGACGATTGGGCCTGAAAGAACCTCAGAGGAAATCGGGAGAGCCCAAGGGATGTATGCAT 682 Query 323 CGGCTGACCAGAACAAGC-TTGGTCTGCTTATGGCTTTTAACTTGGTTTTCACGAAGGGT 381 |||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| Sbjct 683 CGGCTGACCAGAACAA-CTTTGGTCTGCTTATGGCTTTTAACTTGGTTTTCACCAAGGGT 741 Query 382 AAATTTTCCGACAGCACCGTGGCGATGTATGGCCGGAATCCTG-TATTGTCGAAGGTGAG 440 ||||||||| |||||||| | ||||||||||||||||||| | ||||||||||| |||| Sbjct 742 GAATTTTCCGGCAGCACCGCGTCGATGTATGGCCGGAATCC-GATATTGTCGAAGCTGAG 800 Query 441 GGAAATGCCGATCATTGGAGGTACGGGAGCTTTCAGGTTCGGAAGAGGATATGCATTGGC 500 || ||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||| Sbjct 801 AGAGATGCCGATCATCGGAGGTACGGGAGCATTCAGGTTCGCAAGAGGATATGCACAGGC 860 Query 501 CAAGACTTTGGTGTTCAATATTACCAGTGGAGATGCTGTGGTCGAATATAATGTCTATAT 560 ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 861 CAAGACTTTTGTGTTCAATATTACCAGTGGAGATGCTGTTGTCGAGTATAATGTCTATAT 920 Query 561 TTGGCATTAA 570 ||||||||| Sbjct 921 CTGGCATTAA 930 > Ahg324296 jgi|Araly1|324296|fgenesh1_pm.C_scaffold_5001840 Length=333 Score = 392 bits (212), Expect = 1e-108 Identities = 294/334 (88%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 239 TGGTTGCAGTCGTTGACGACAAATTGACGGTCGGGCCTGAAATTACCTCAGAGGAAGTTG 298 |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 2 TGGTTGCAGTGGTTGACGACATATTGACGGTGGGGCCTGAAATTACCTCAGAGGAAGTTG 61 Query 299 GGAGAGCCCAAGGAATGTATGCATCGGCTGACCAGAACAAGCTTGGTCTGCTTATGGCTT 358 |||||||||||||||| | |||| || | |||||||| ||| || ||||||||||||||| Sbjct 62 GGAGAGCCCAAGGAATTTTTGCAGCGACCGACCAGAATAAGTTTAGTCTGCTTATGGCTT 121 Query 359 TTAACTTGGTTTTCACGAAGGGTAAATTTTCCGACAGCACCGTGG-CGATGTATGGCCGG 417 | |||||||||||||| |||||| ||||||| | |||||| | || |||||||||||||| Sbjct 122 TCAACTTGGTTTTCACCAAGGGTGAATTTTCGGGCAGCACGG-GGTCGATGTATGGCCGG 180 Query 418 AATCCTG-TATTGTCGAAGGTGAGGGAAATGCCGATCATTGGAGGTACGGGAGCTTTCAG 476 ||||| | || |||| |||||||| || ||||||||||| ||||||||||||||||| || Sbjct 181 AATCC-GATAATGTCAAAGGTGAGAGAGATGCCGATCATCGGAGGTACGGGAGCTTTTAG 239 Query 477 GTTCGGAAGAGGATATGCATTGGCCAAGACTTTGGTGTTCAATATTACCAGTGGAGATGC 536 ||| || ||||||||||| |||||||||||| |||||||| |||| ||||| |||| Sbjct 240 GTTTGGTAGAGGATATGCGCAGGCCAAGACTTTTACGTTCAATACTACCCGTGGAAATGC 299 Query 537 TGTGGTCGAATATAATGTCTATATTTGGCATTAA 570 ||||||||| |||||||||||||| ||||||||| Sbjct 300 TGTGGTCGAGTATAATGTCTATATCTGGCATTAA 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20832951594 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5