BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65930.1
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475696 jgi|Araly1|475696|fgenesh2_kg.2__826__AT1G65930.1 2285 0.0
Ahg474695 jgi|Araly1|474695|fgenesh2_kg.1__4649__AT1G54340.1 699 0.0
Ahg908062 jgi|Araly1|908062|Al_scaffold_0002_1143 287 2e-76
> Ahg475696 jgi|Araly1|475696|fgenesh2_kg.2__826__AT1G65930.1
Length=1582
Score = 2285 bits (1237), Expect = 0.0
Identities = 1475/1585 (93%), Gaps = 36/1585 (2%)
Strand=Plus/Plus
Query 48 ACAAGCTATTTCACCTACTTCATCACTCATCACCAGCTTCG-C-ATCTTCTTCTCCGGCT 105
||||| | |||||||||||||| || ||| | || ||||| | ||||||||||||||||
Sbjct 23 ACAAGTTTTTTCACCTACTTCA-CA-TCACCTCCTCCTTCGACGATCTTCTTCTCCGGCT 80
Query 106 TGATCTTCTCTCG-TTTCTAGATCTCCGACGATCGGAATATCAAATCCGATCGATTAATT 164
||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 81 TGATCTTCTCTCGTTTTC-AGATCTCCGACGATCGGAATATCCAATCCGATCGATTAATT 139
Query 165 CTGTCAATCACACaaaaaccgaaaaccaaaaaaaaaCCATGGCGTTTGAGAAGATCAAGG 224
| ||||||| |||||||||| ||| | ||||| |||||||||||||||||||||||||
Sbjct 140 CCGTCAATCTTACAAAAACCG-AAAGC--AAAAACACCATGGCGTTTGAGAAGATCAAGG 196
Query 225 TGGCAAATCCCATCGTCGAGATGGATGGTGATGAAATGACCAGGGTTATTTGGAAGTCTA 284
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 197 TGGCAAATCCCATCGTCGAGATGGATGGTGATGAAATGACTAGGGTTATCTGGAAGTCTA 256
Query 285 TCAAGGATAAGCTTATTACTCCTTTTGTGGAGTTGGATATCAAGTACTTCGACCTTGGTC 344
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 257 TCAAGGATAAGCTTATTACGCCTTTTGTGGAGTTGGATATCAAGTACTTTGATCTTGGTC 316
Query 345 TTCCTCACCGTGATGCTACGGATGACAAAGTTACTATTGAAAGTGCTGAAGCTACTAAGA 404
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 317 TTCCTCACCGCGATGCTACGGATGACAAAGTTACTGTTGAAAGTGCTGAAGCCACTAAGA 376
Query 405 AGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGATGAAGGCCGTGTCACGGAAT 464
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 377 AGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGATGAAGGCCGCGTCACGGAAT 436
Query 465 TTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCATCAGGAATATCCTGAATGGAA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCATCAGGAATATCCTGAATGGAA 496
Query 525 CTGTATTTAGAGAGCCAATTATCTGCAAAAATGTTCCCAAGCTTGTCCCAGGCTGGACAA 584
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 497 CTGTGTTTAGAGAACCAATTATCTGCAAAAATGTTCCTAAGCTTGTCCCAGGCTGGACAA 556
Query 585 AGCCCATCTGCATTGGAAGGCATGCTTTTGGTGATCAGTACCGTGCCACTGATGCTGTAA 644
|||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 557 AGCCGATTTGCATTGGAAGGCATGCTTTTGGTGATCAGTATCGTGCTACTGATGCTGTAA 616
Query 645 TCAAGGGACCAGGAAAACTGACTATGACCTTTGAGGGAAAAGATGGGAAAACTGAAACCG 704
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 617 TTAAGGGACCAGGAAAACTGACCATGACCTTTGAGGGAAAGGATGGGAAAACTGAAACCG 676
Query 705 AAGTCTTTACATTTACTGGTGAAGGTGGTGTTGCTATGGCAATGTACAACACTGAT--GA 762
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 677 AAGTCTTTACATTTACTGGTGAAGGTGGTGTTTCTATGGCAATGTACAACACTGATGAGA 736
Query 763 --GTCCATCCGTGCTTTTGCTGATGCATCGATGAACACTGCTTAT-GAG-AAAAAGTGGC 818
|||| ||| | | ||| || ||| | | || | || || | |||
Sbjct 737 TTGTCC-TCCAAG-ATGAGCT-AT--ATC--TTTA-TCTTATCATACAGTCCATCCTGG- 787
Query 819 CACTTTACCTTAGCACAAAGAATACCATTCTTAAGAAATACGATGGCAGATTCAAAGACA 878
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CACTTTATCTTAGCACAAAGAATACCATTCTTAAGAAATACGATGGCAGATTCAAAGACA 847
Query 879 TCTTCCAAGAAGTCTATGAAGCCAGCTGGAAGTCGAAGTATGATGCTGCTGGAATCTGGT 938
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 848 TCTTCCAAGAAGTCTATGAAGCCAGCTGGAAGTCAAAGTATGAGGCTGCTGGAATCTGGT 907
Query 939 ATGAACACCGTCTCATTGATGATATGGTGGCCTACGCTCTTAAGAGTGAGGGAGGCTATG 998
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 908 ATGAACACCGTCTCATTGATGATATGGTGGCCTACGCTCTTAAGAGCGAGGGGGGCTATG 967
Query 999 TTTGGGCATGCAAAAACTATGATGGTGATGTCCAAAGTGATTTCTTGGCACAAGGATTCG 1058
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TGTGGGCTTGCAAAAACTATGATGGTGATGTCCAAAGTGATTTCTTGGCACAAGGATTCG 1027
Query 1059 GGTCACTTGGATTGATGACATCTGTTCTGGTCTGCCCAGATGGAAAGACGATTGAAGCTG 1118
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1028 GGTCACTTGGATTGATGACATCTGTTCTGGTCTGCCCGGATGGAAAGACGATTGAAGCTG 1087
Query 1119 AAGCGGCCCATGGAACTGTCACCCGTCACTTCAGGGTTCATCAGAAAGGTGGTGAGACCA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 AAGCGGCCCATGGAACTGTCACCCGTCACTTCAGGGTTCATCAGAAAGGTGGTGAGACCA 1147
Query 1179 GCACAAACAGCATAGCCTCTATTTTTGCTTGGACTCGTGGACTTGCACACAGGGCTAAGT 1238
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1148 GCACAAACAGCATAGCCTCCATCTTTGCTTGGACTCGTGGACTTGCACACAGGGCTAAGT 1207
Query 1239 TAGATGACAACGCAAAACTCTTGGATTTCACTGAGAAGCTGGAAGCCGCTTGTGTTGGGA 1298
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1208 TAGATGACAACGCAAAACTCTTGGATTTCACTGAGAAGCTCGAAGCCGCTTGTGTTGGGA 1267
Query 1299 CAGTGGAGTCAGGGAAAATGACCAAAGATCTTGCACTCATCATTCACGGCTCAAAGCTTT 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 CAGTGGAGTCAGGGAAAATGACCAAAGATCTTGCACTCATCATTCACGGCTCAAAGCTTT 1327
Query 1359 CGAGGGACACGTACCTGAACACAGAGGAGTTCATCGATGCAGTCGCTGCTGAGCTCAAAG 1418
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1328 CGAGGGACACTTACCTGAACACAGAAGAGTTCATCGATGCTGTCGCTGCTGAGCTCAAAG 1387
Query 1419 AAAGACTC-AATGCTTAAGAAACTGAAGAAATTGGGTAAAATTCGAACGTCTCAGTTCCT 1477
||||||| || || |||||||||||||||||| |||||||||||||||||||||| | |
Sbjct 1388 CAAGACTCCAA-GCATAAGAAACTGAAGAAATTTGGTAAAATTCGAACGTCTCAGT-C-T 1444
Query 1478 AAGTGTCTTATCTGGTTGGTGGGGTTGGTTGGGATCGGGAGGAAT-AAACTTTTGTGGAG 1536
||||||||||||||||||||||||||| | || || || ||||||| ||||||
Sbjct 1445 ------CTTATCTGGTTGGTGGGGTTGGTTGGGTT-GGTTGGGATTAAACTTTGGTGGAG 1497
Query 1537 AGGAGTGTTGAGAACGATTTGTTTCCTCTCTTATAATATTTCCAAAATATTGCGACATTT 1596
|||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||
Sbjct 1498 AGGAGTGTTGAGAACGATTTGTTTCCTCCCTTAAAATATTTACAAAATATTGCGACATTT 1557
Query 1597 TTCCATTTTTATTCAGATCTCGAAT 1621
|||||||||||||||||||||||||
Sbjct 1558 TTCCATTTTTATTCAGATCTCGAAT 1582
> Ahg474695 jgi|Araly1|474695|fgenesh2_kg.1__4649__AT1G54340.1
Length=1518
Score = 699 bits (378), Expect = 0.0
Identities = 949/1219 (78%), Gaps = 61/1219 (5%)
Strand=Plus/Plus
Query 212 GAGAAGATCAAGGTG-GCAAATCCCATCGTCGAGATGGATGGTGATGAAATGAC-CAGGG 269
||||||||||||||| | |||||| | || || |||||||| || |||||||| | | |
Sbjct 46 GAGAAGATCAAGGTGATC-AATCCCGTTGTTGAAATGGATGGAGACGAAATGACTC-GAG 103
Query 270 TTATTTGG-AAGTCTATCAAGGATAAGCTTA-TTACTCCTTTTGTGGAGTTGGATATCAA 327
|||| ||| || || ||||| || ||||||| || | ||||| |||||||||||||||||
Sbjct 104 TTATCTGGAAATTC-ATCAAAGACAAGCTTATTTTC-CCTTTCGTGGAGTTGGATATCAA 161
Query 328 GTACTTCGACCTTGGTCTTCCTCACCGTGA-TGCTACGGATGACAAAGTTACTATTGAAA 386
||||| || ||||| || ||| |||| || | | || || || || |||||||| || |
Sbjct 162 ATACTTTGATCTTGGACTGCCTAACCGCGATTTC-ACTGACGATAAGGTTACTATAGAGA 220
Query 387 GTGCTGAAGCTAC-TAAGAAGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGAT 445
||||||||||||| | | ||||| |||||||| || |||||||| || || ||||| |||
Sbjct 221 GTGCTGAAGCTACTTTA-AAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGAT 279
Query 446 GAAGGC-CGTGTCACGGAATTTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCAT 504
||| || ||||| | ||| || ||||| ||| | |||||||| ||||| || || || ||
Sbjct 280 GAA-GCTCGTGTTAGGGAGTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAACGGAACTAT 338
Query 505 CAGGAATATCCTGAATGGAACTGTATTT-AGAGAGCCAATTATCTGCAAAAATGTTCCCA 563
||||| || | || || || || ||| || ||||| || || |||| ||| || ||
Sbjct 339 AAGGAACATTTTAAACGGCACAGT-TTTCAGGGAGCCTATCATTTGCAGAAACATT-CCT 396
Query 564 AG-CTTGTCCCAGGCTGGACAAAGCCCATCTGCATTGGAAGGCATGCTTTTGGTGATCAG 622
| |||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 397 CGTATTGTTCCAGGATGGACGAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAG 456
Query 623 TACCGTGCCACTGATG-C-TGTAATCAAGGGACCAGGAAAACTGA--CTATGACCTTTGA 678
|| | ||||||||| | | | |||| | |||||||||||||| ||| | |||||
Sbjct 457 TATAGAGCCACTGATATCAT-TG-TCAATGAACCAGGAAAACTGAAACTA-GTT-TTTGA 512
Query 679 GGGAAAAG-ATGG-----GAAAACTGAAACCGAAGTCTTTACATTT-ACTGGTGAAGGTG 731
| || | || |||||| ||| ||||||||| | |||| ||||||| |||||
Sbjct 513 GCCAAGTGGATCTTCTCAGAAAACAGAATTCGAAGTCTTCA-ATTTCACTGGTGGAGGTG 571
Query 732 GTGTTGCTATGGCAATGTACAACACTGATGAGTCCATCCGTGCTTTTGCTGA-TGCATCG 790
| | ||| | || ||||| |||||||||||||| || ||||| |||||||| | | |||
Sbjct 572 -T-T-GCTTTAGCCATGTATAACACTGATGAGTCTATTCGTGCATTTGCTGAGTCC-TCG 627
Query 791 ATGAACACTGCTTATGAGAAAAAGTGGCCACTTTACCT-TAGCACAAAGAATACCATTCT 849
||| |||| ||||| |||||||||||||||||||||| | |||||| || ||||| ||
Sbjct 628 ATGTACACAGCTTACCAGAAAAAGTGGCCACTTTACCTCTC-CACAAAAAACACCATCCT 686
Query 850 TAAGAA-ATACGATGGCAGATTCAAAGACATCTTCCAAGAAGTCTATGAAGCCAGCTGGA 908
|| || ||| ||||| |||||||| || || ||||||||||| |||||||| | ||||
Sbjct 687 CAA-AATATATGATGGAAGATTCAAGGATATATTCCAAGAAGTTTATGAAGCTAATTGGA 745
Query 909 -AGTCGAAGTATGATGCTGCTGGAATCTGGTATGAACACCGTCTCATTGATGATATGGTG 967
| || |||||||| ||||| || || |||||||| || ||| | || |||||||||||
Sbjct 746 GA-TCCAAGTATGAAGCTGCAGGGATATGGTATGAGCATCGTTTGATAGATGATATGGTT 804
Query 968 GCCTACGCTCTT-AAGAGTGAGGGAGGCTATGTTTGGGCATGCAAAAACTATGATGGTGA 1026
|| || || | | || |||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 805 GCATATGC-CATGAAAAGTGAGGGGGGTTATGTCTGGGCATGCAAGAATTACGATGGAGA 863
Query 1027 TGTCCAAAGTGATTTCTTGGCACAAGGAT-TCGGGTCACTTGGATTGATGACATCTGT-T 1084
||| || || |||||||| || ||||||| | || || || ||| ||||||| || || |
Sbjct 864 TGTACAGAGCGATTTCTTAGCCCAAGGATAT-GGATCTCTGGGAATGATGACGTCGGTGT 922
Query 1085 CTGGTCTGCCCAGATGGAAAGACGATTGAAGCTGAAGCGGCCCATGGAACTGTCACCCGT 1144
|||| || || |||||||| || |||||||| ||||| || ||||| || || || ||
Sbjct 923 -TGGTTTGTCCTGATGGAAAAACCATTGAAGCAGAAGCAGCTCATGGCACAGTTACTCGC 981
Query 1145 CACTTCAGGGTTCATCAGAAAGGTGGTGAGACCAGCACAAACAGCATAGCCTCTATTTTT 1204
|||| ||| ||||| || ||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 982 CACTACAGAGTTCACCAAAAAGGTGGTGAAACAAGCACCAACAGCATAGCCTCCATTTTT 1041
Query 1205 GCTTGGACTC-GTGGACTTGCACACAGGGCTAAGTTAGAT-GACAACGCAAAACTCTTG- 1261
|||||| | | | || ||||| |||||||| ||| | || | ||| || |||||||
Sbjct 1042 GCTTGGTC-CAGAGGCCTTGCCCACAGGGCAAAGCTGGACAG-CAATGCCGCACTCTTGA 1099
Query 1262 GATTTCACTGAGAAGCTGGAAGCCGCTTGTGTTGGGACAGTGGAGTCAGGGAAAATGACC 1321
| | | |||||||| || ||||| ||||| | ||||| |||||||| || |||||||||
Sbjct 1100 GCTAT-ACTGAGAAACTAGAAGCAGCTTGCATGGGGACGGTGGAGTCTGGCAAAATGACC 1158
Query 1322 AAAGATCTTGCACTCATCATTCACGG-CTCAAAGCTTTCGAGGGA-CACGTACCTGAACA 1379
|| ||||| || ||| | || ||||| | ||| | || |||||| || ||| |||| |
Sbjct 1159 AAGGATCTAGCTCTCCTGATCCACGGACCCAAGG-TTAGGAGGGATCA-GTATGTGAATA 1216
Query 1380 CAGAGGAGTTCATCGATGC 1398
|||| |||||||| |||||
Sbjct 1217 CAGAAGAGTTCATTGATGC 1235
> Ahg908062 jgi|Araly1|908062|Al_scaffold_0002_1143
Length=381
Score = 287 bits (155), Expect = 2e-76
Identities = 233/269 (87%), Gaps = 12/269 (4%)
Strand=Plus/Plus
Query 1229 AGGGCTAAGTTAGATGACAACGCAAAACTCTTGGATTTCACTGAGAAGCTGGAAGCCGCT 1288
||||||| ||||||||||||| ||||||| ||||| ||||| || ||||| |||||||||
Sbjct 115 AGGGCTAGGTTAGATGACAACACAAAACTTTTGGAGTTCACCGAAAAGCTTGAAGCCGCT 174
Query 1289 TGTGTTGGGACAGTGGAGTCAGGGAAAATGACCAAAGATCTTGCACTCATCATTCACGGC 1348
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 175 TGTGTTGGGACAGTGGAGTCAGGGAAAATGACCAAAGATATTGCACTCATCATTCACGGC 234
Query 1349 TCAAAGCTTTCGAGGGACACGTACCTGAACACAGAGGAGTTCATCGATGCAGTCGCTGCT 1408
||| |||||| | ||| | | ||||||||||| | |||||||||| ||||| || |
Sbjct 235 TCATGGCTTTC-A----CACTT-CATGAACACAGAGAATTTCATCGATGTAGTCGTTGAT 288
Query 1409 GAGCTCAAAGAAAGACT--CA--AT-GCTTAAGAAACTGAAGAAATTGGGTAAAA-TTCG 1462
|||||||||| |||||| || | ||||||||||||||||||||| ||||||| || |
Sbjct 289 GAGCTCAAAGCAAGACTAGCATCAAAGCTTAAGAAACTGAAGAAATTTGGTAAAAATTTG 348
Query 1463 AACGTCTCAGTTCCTAAGTGTCTTATCTG 1491
||||||||||||||| ||| | |||||||
Sbjct 349 AACGTCTCAGTTCCTCAGTCTTTTATCTG 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63877340865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5