BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G65960.2
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925737 jgi|Araly1|925737|scaffold_201298.1 2460 0.0
Ahg488599 jgi|Araly1|488599|fgenesh2_kg.6__1733__AT5G17330.1 830 0.0
Ahg475704 jgi|Araly1|475704|fgenesh2_kg.2__834__AT1G65970.1 536 2e-151
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 187 3e-46
> Ahg925737 jgi|Araly1|925737|scaffold_201298.1
Length=1530
Score = 2460 bits (1332), Expect = 0.0
Identities = 1467/1533 (96%), Gaps = 6/1533 (0%)
Strand=Plus/Plus
Query 67 TCTCTTTCACTAAACAGAAACAAAGATGGTTTTGACAAAAACCGCAACGAATGATGAATC 126
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCACTAAAAAGAAACAAAGATGGTTTTGACAAAAACCGCAACGAATGATGAATC 60
Query 127 TGTCTGCACCATGTTCGGATCTCGCTATGTTCGCACTACACTTCCCAAGTATGAGATTGG 186
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTCAGCACCATGTTCGGATCTCGCTATGTTCGCACTACACTTCCCAAGTATGAGATTGG 120
Query 187 TGAGAATTCGATACCGAAAGACGCTGCGTATCAGATCATAAAAGATGAGCTGATGCTTGA 246
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TGAGAATTCGATACCGAAAGACGCTGCCTATCAGATCATAAAAGATGAGCTGATGCTTGA 180
Query 247 TGGTAACCCAAGGCTTAACCTAGCTTCTTTTGTGACTACATGGATGGAACCAGAGTGTGA 306
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TGGTAACCCGAGGCTTAACCTAGCTTCGTTTGTGACTACATGGATGGAACCAGAGTGTGA 240
Query 307 CAAACTCATCATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCAC 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAACTCATCATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCAC 300
Query 367 AACTGAGCTCCAGAACCGATGTGTAAACATTATAGCTCGACTGTTCAATGCGCCACTCGA 426
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 AACTGAGTTTCAGAACCGATGTGTAAACATTATAGCTCGACTGTTCAATGCGCCACTCAA 360
Query 427 GGAATCTGAGACGGCGGTGGGAGTAGGGACAGTTGGTTCTTCAGAAGCCATCATGTTAGC 486
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAATCTGAGACTGCGGTGGGAGTAGGGACAGTTGGTTCTTCAGAAGCCATCATGTTAGC 420
Query 487 CGGATTGGCCTTCAAAAGAAAATGGCAGAACAAACGCAAGGCTGAGGGTAAACCCTATGA 546
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 421 CGGATTGGCCTTCAAAAGAAAATGGCAAAACAGACGCAAGGCTGAGGGTAAACCCTATGA 480
Query 547 CAAACCCAACATTGTCACCGGAGCCAATGTTCAAGTTTGCTGGGAGAAATTCGCTCGGTA 606
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CAAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGCTGGGAGAAATTCGCTCGGTA 540
Query 607 CTTCGAGGTGGAGCTAAAGGAAGTAAACCTAAGTGAAGGTTACTACGTGATGGATCCAGA 666
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 541 CTTCGAGGTGGAGCTAAAAGAGGTAAAGCTAAGTGAAGGTTACTACGTGATGGATCCAGA 600
Query 667 CAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCAGCCATA-TTGGGATCCA 725
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 601 CAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCGGCCATTCTTGGG-TCCA 659
Query 726 CACTCAACGGTGAGTTCGAAGACGTGAAACGTCTCAATGACTTGCTAGTCAAGAAAAACG 785
||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 660 CACTCAATGGTGAGTTCGAAGACGTGAAGCGTCTCAATGACTTGCTGGTCAAGAAAAATG 719
Query 786 AGGAGACTGGTTGGAACACACCGATCCACGTGGATGCAGCAAGTGGAGGGTTCATAGCTC 845
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 AGGAGACTGGTTGGAACACACCGATCCACGTAGATGCAGCAAGTGGAGGGTTCATAGCTC 779
Query 846 CGTTTATCTATCCTGAATTAGAATGGGACTTTAGGCTTCCTTTGGTTAAGAGCATCAACG 905
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 780 CATTTATCTATCCTGAATTGGAATGGGACTTTAGACTTCCTTTGGTTAAGAGCATCAACG 839
Query 906 TGAGTGGTCACAAGTATGGACTAGTCTATGCTGGTATTGGTTGGGTCGTGTGGAGGGCAG 965
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAGTGGTCACAAGTATGGACTTGTCTATGCTGGTATTGGTTGGGTCGTGTGGAGGGCAT 899
Query 966 CAGAGGATTTACCTGAAGAGCTTATCTTTCATATTAATTATCTTGGTGCTGATCAACCCA 1025
|||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 900 CAGAGGATTTGCCTGAAGAGCTTATCTTTCATATTAACTATCTTGGTTCTGATCAACCCA 959
Query 1026 CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTACCAGCTCA 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 960 CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTATCAACTCA 1019
Query 1086 TTCGTCTTGGATTCGAGGGGTACAAAAATGTGATGGAGAATTGCATAGAGAACATGGTGG 1145
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 TTCGTCTTGGGTTCGAGGGGTACAAGAATGTGATGGAGAATTGCATAGAGAACATGGTGG 1079
Query 1146 TTCTCAAAGAAGGTATAGAGAAAACAGAGCGTTTCAACATAGTCTCAAAGGACCAAGGAG 1205
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1080 TTCTCAAAGAAGGGATAGAGAAAACAGAGCGTTTCAACATAGTTTCCAAGGACCAAGGAG 1139
Query 1206 TGCCAGTCGTCGCCTTCTCTCTCAAGGACCATAGTTTCCACAACGAGTTCGAGATCTCTG 1265
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGCCAGTCGTAGCCTTCTCTCTCAAGGACCATAGTTTCCACAACGAGTTCGAGATCTCTG 1199
Query 1266 AGATGCTACGTCGTTTTGGCTGGATCGTCCCAGCTTACACTATGCCTGCCGATGCACAGC 1325
|||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || |
Sbjct 1200 AGATGCTACGCCGTTTTGGATGGATCGTCCCGGCTTACACTATGCCTGCGGATGCGCAAC 1259
Query 1326 ACATCACGGTTCTGCGTGTTGTCATCAGGGAAGATTTCTCAAGAACACTCGCGGAGAGAC 1385
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1260 ACATCACGGTTCTACGTGTTGTCATCAGGGAAGATTTCTCAAGAACACTCGCGGAAAGAC 1319
Query 1386 TTGTTG-CTGATATT-TCGAAGGTGCTTCATGAGCTAGATACCTTGCCTTCCAAGATATC 1443
|||| | | |||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 TTGTAGTC-GATATTGT-GAAGGTGCTTCACGAGCTAGATACCTTGCCTTCCAAGATATC 1377
Query 1444 TAAGAAGATGGGAATAGAAGGGATCGCGGAAAATGTAAAGGAGAAGAAGATGGAGAAGGA 1503
||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| |||
Sbjct 1378 TAAGAAGATGGGAATAGAAGGGATCGCAGAAAATGTTAAGGATAAGAAAATGGAGAGGGA 1437
Query 1504 GATTCTGATGGAAGTTATTGTTGGATGGAGGAAGTTTGTGAAGGAGAGGAAGAAGATGAA 1563
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1438 GGCTCTGATGGAAGTTATTGTTGGATGGAGGAAGTTTGTGAAGGATAGGAAGAAGATGAA 1497
Query 1564 TGGTGTGTGCTAAGCAAGTGTGTTGCCTTTGTG 1596
|||||||||||||| |||||||||| ||||||
Sbjct 1498 TGGTGTGTGCTAAGGAAGTGTGTTGTGTTTGTG 1530
> Ahg488599 jgi|Araly1|488599|fgenesh2_kg.6__1733__AT5G17330.1
Length=1744
Score = 830 bits (449), Expect = 0.0
Identities = 1042/1324 (79%), Gaps = 58/1324 (4%)
Strand=Plus/Plus
Query 140 TTCGGATCTCGCTATGTTCGCACTACACTTCCCAAGTAT-GAGATTG-GTGAGAATTCGA 197
|||| ||| || || || || ||| ||||||| | || | ||| || ||| || ||||
Sbjct 179 TTCGCATCACGTTACGTCCGTACTTCACTTCCTAGGT-TCAAGA-TGCCTGAAAACTCGA 236
Query 198 TACCGAAAGACGCTGCGTATCAGATCATAAAAGATGAGCTGATGCTTGATGGTAACCCAA 257
|||||||||| || ||||||||||| || || || |||||||||||||| || || || |
Sbjct 237 TACCGAAAGAAGCGGCGTATCAGATTATCAACGACGAGCTGATGCTTGACGGGAATCC-A 295
Query 258 GGCTT-AACCTAGCTTCTTTTGTGACTACATGGATGGAACCAGAGTGTGACAAACTCATC 316
|||| ||| | || ||||| ||||| || |||||||| || |||||||| |||||||||
Sbjct 296 CGCTTAAACTTGGCCTCTTTCGTGACGACGTGGATGGAGCCTGAGTGTGATAAACTCATC 355
Query 317 ATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCACAACTGAGCTC 376
||| ||| || || |||||||| ||||| ||||| |||||||| ||||| || || |||
Sbjct 356 ATGTCCTCCATTAACAAGAACTATGTTGACATGGACGAGTACCCCGTCACCACCGAACTC 415
Query 377 CAGAACCGATGTGTAAACATTATAGCTCGA-CTGTTCAATGCGCCACTCGAGGA-A-TCT 433
||||| |||||||| ||||| || || | | || |||||||| || | |||| | |
Sbjct 416 CAGAATCGATGTGTGAACATGATTGCAC-ATCTATTCAATGCACC-GT-TAGGAGAGACG 472
Query 434 GAGACGGCGGTGGGAGTAGGG-ACAGTTGGTTCTTCAGAAGCCATCATGTTAGCCGGATT 492
||||| || || ||||| ||| || ||||| || || || ||||| ||||| ||||| ||
Sbjct 473 GAGACAGCCGTCGGAGT-GGGAACCGTTGGATCATCGGAGGCCATAATGTTGGCCGGTTT 531
Query 493 GGCCTTCAAAAGAAAATGGCAGAACAAACGCAAGGCTGAGGGTAAACCCTAT-GACAAAC 551
||||||||| | |||||||||||||| ||||| || || || |||||| | || ||||
Sbjct 532 GGCCTTCAAGCGTAAATGGCAGAACAAGCGCAAAGCCGAAGGCAAACCC-GTCGATAAAC 590
Query 552 CCAACATTGTCACCGGAGCCAATGTTCAAGTTTGCTGGGAGAAATTCGCTCGGTACTTCG 611
||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |
Sbjct 591 CCAACATTGTCACCGGAGCCAATGTTCAAGTGTGTTGGGAGAAATTCGCTAGGTACTTTG 650
Query 612 AGGTGGAGCTAAAGGAAGT-AAACCTAAGTGAAGGTTACTACGTGATGGATCCAG-ACAA 669
|||| || || |||||||| ||| | |||||||| ||||| |||||||| || | | ||
Sbjct 651 AGGTTGAACTTAAGGAAGTGAAAT-TGAGTGAAGGATACTATGTGATGGACCC-GCAAAA 708
Query 670 AGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCAGCCATA-TTGGGATCCACAC 728
||| | || ||||| || |||||||| || ||||| || ||||| |||| ||||| |
Sbjct 709 AGCTGTTGATATGGTTGATGAGAACACTATTTGTGTTGCGGCCATTCTTGGT-TCCACTC 767
Query 729 TCAACGGTGAGTTCGAAGACGTGAAACGTCTC-AATGA-CT-T-GCTAGTCAAGAA-AAA 783
| || || || || ||||| || |||| ||| || || || | | | | ||||| |||
Sbjct 768 TTAATGGAGAATTTGAAGATGTCAAAC-TCTTGAACGATCTCTTGGTTGAAAAGAACAAA 826
Query 784 CGAGGAGACTGGTTGGAACACACCGATCCACGTGGATGCAGCAAGTGGAGGGTTCATAGC 843
|| | || || ||| | ||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct 827 -GA--A-ACCGGATGGGATACACCAATCCACGTGGATGCCGCAAGTGGAGGATTCATTGC 882
Query 844 TCCGTTTATCTATCCTGAATTAGAATGGGACTTTAGGCTTCCTTTGGTTAAGAGCATCAA 903
|||||| | ||||| ||| | |||||||||||||| || || ||||| ||||| |||||
Sbjct 883 ACCGTTTTTGTATCCGGAACTGGAATGGGACTTTAGACTGCCATTGGTGAAGAGTATCAA 942
Query 904 CGTGAGTGGTCACAAGTATGGACTAGTCTATGCTGGTATTGGTTGGGTCG-TGTGGAGGG 962
||||||||||||||||||||||| || || || || ||||||||||| | | |||||
Sbjct 943 TGTGAGTGGTCACAAGTATGGACTTGTGTACGCAGGAATTGGTTGGGT-GATTTGGAGAA 1001
Query 963 -CAGCAGAGGATTTACCTGAAGAGCTTATCTTTCATATTAATTATCTTGGTGCTGATCAA 1021
|| ||||||||| ||||| || || ||||| ||||| ||||||||||||||||| |||
Sbjct 1002 ACAA-AGAGGATTTGCCTGAGGAACTCATCTTCCATATCAATTATCTTGGTGCTGACCAA 1060
Query 1022 CCCAC-TTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTACCA 1080
||||| ||| ||||||||||||||||| || || || ||| | |||||||||||||||||
Sbjct 1061 CCCACGTTT-ACTCTCAATTTCTCCAAAGGTTCAAGTCAAGTCATTGCTCAATACTACCA 1119
Query 1081 GCTCATTCGTCTTGGATT-CGAGGGGTACAAAAATGTGATGGAGAATTGCATAGAGAACA 1139
|| || || |||| |||||| || | |||||||||||||||||||| |||||| |
Sbjct 1120 ACTTATCCGA-TTGGGCCACGAGGGTTATACAAATGTGATGGAGAATTGCAGAGAGAATA 1178
Query 1140 TGGTGGTTCTCAAAGAA-GGTA-TAGAGAAAACAGAGCGTTTCAACATAGTCTCAAAGGA 1197
|| | || || || ||| || | | ||||| ||||| | |||||||| || ||||||||
Sbjct 1179 TGATCGTGCT-AAGGAAAGG-ACTTGAGAAGACAGAAAGGTTCAACATCGTATCAAAGGA 1236
Query 1198 CCAAGGAGTGCCAGTCGTCGCCTTCTCTCTC-AAGGACCATAGTT-TCCACAAC-GAGTT 1254
| | ||||||||| | ||||| ||||| || || || | || | || ||| | |||||
Sbjct 1237 CGAGGGAGTGCCACTTGTCGCTTTCTC-CTTGAAAGATAACAGCTCTC-ACA-CTGAGTT 1293
Query 1255 CGAGATCTCTGAGATGCTACGTC-GTTTTGGCTGGATCGTCCCAGCTTACACTATGCCTG 1313
||| ||||| || ||||| || | | | ||| ||||| || || || || || ||||||
Sbjct 1294 CGAAATCTCCGACATGCTTCG-CAGGTATGGATGGATAGTGCCGGCCTATACAATGCCT- 1351
Query 1314 CC-GATGCACAGCACATCACGGTTCTGCGTGTTGTCATCAGGGAAGATTTCTCAAGAACA 1372
|| |||||||| |||||||| ||||| || || || ||||| ||||||||||| ||||||
Sbjct 1352 CCAGATGCACAACACATCACTGTTCTTCGAGTAGTTATCAGAGAAGATTTCTCGAGAACA 1411
Query 1373 CTCGCGGAGAGACTTGTTGCT-GATATTTCGAAGGTGCTTCATGAGCTAGAT-ACCTTGC 1430
|| || ||||||||||| | | ||||| ||| ||| | | |||||| ||| | ||| |
Sbjct 1412 CTTGCAGAGAGACTTGT-GATCGATATAGAGAAAGTGATGCGTGAGCTCGATGAGCTT-C 1469
Query 1431 CTTC 1434
||||
Sbjct 1470 CTTC 1473
> Ahg475704 jgi|Araly1|475704|fgenesh2_kg.2__834__AT1G65970.1
Length=732
Score = 536 bits (290), Expect = 2e-151
Identities = 331/351 (94%), Gaps = 1/351 (0%)
Strand=Plus/Minus
Query 1702 AAGCCATTGTTATTGAACGTTTATCAAATACTTTATTATGCCAAGCAAGTCAAACACATG 1761
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 732 AAGCCGTTGTTATTGAACGATTATCAAATACTTTATTATGCCAAGCAAGTCAAACACTTG 673
Query 1762 CTTGTTGATTGAAATCAAGCTATAGAAATCTCTTCTTCACATACAGCAGTTTAGATTCAC 1821
||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 672 CTTGTTGATTGAAATTAGGCTATAGAATTCTCTTCTTCACATACAGCGGTTTAGATTCAC 613
Query 1822 AATACAACAAGCGAAACGATAAAGTTTCTTAAAGAGCCTTGAGAATATCCTCTGCGCTGG 1881
|| ||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 612 AACACAACAAGCGAAA-AATAAAGTTTCTTAGAGAGCCTTGAGGATATCCTCGGCGCTTG 554
Query 1882 AAACCGTGAACTCGCCACCAGATTCAACATTGGCTACAGTCACCTTAAGGTTATCAAGCA 1941
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 553 AAACCGTGAACTCGCCACCAGATTCGACATTAGCTACAGTCACCTTAAGGTTATCGAGCA 494
Query 1942 ACAAAGCGAATCTCCTTGACCTAATACCAAGACCCTTGTCCTTAAGGTCAAGCTCAAGTC 2001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 ACAAAGCGAATCTCCTTGACCTAATACCAAGACCCTTGTCCTTAAGGTCAAGCTCAAGTC 434
Query 2002 CAAGAAGATGCGTGTATTCTCCAGACCCATCTGCTACAAACTTCACATGCT 2052
||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 433 CAAGAAGGTGTGTGTATTCTCCAGAACCATCTGCTACAAACTTCACATGCT 383
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 187 bits (101), Expect = 3e-46
Identities = 137/155 (88%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 1899 CCAGATTCAACATTGGCTACAGTCACCTTAAGGTTATCAAGCAACAAAGCGAATCTCCTT 1958
||||||||||| ||||||||| ||||||| |||||||| | |||| || ||| ||| ||
Sbjct 440 CCAGATTCAACTTTGGCTACAATCACCTTGAGGTTATCGATTAACAGAGTGAAACTCTTT 381
Query 1959 GACCTAATACCAAGACCCTTGTCCTTAAGGTCAAGCTCAAGTCCAAGAAGATGCGTGTAT 2018
||||||| |||| ||||||| || || ||||||||||||||||| |||||||| ||||||
Sbjct 380 GACCTAACACCATGACCCTTATCTTTGAGGTCAAGCTCAAGTCCGAGAAGATGTGTGTAT 321
Query 2019 TCTCCAGACCCATCTGCTACAAACTTCACATGCTT 2053
| |||||||||||||||||||||||||||||||||
Sbjct 320 TTTCCAGACCCATCTGCTACAAACTTCACATGCTT 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208926615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5