BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66130.1
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925757 jgi|Araly1|925757|scaffold_201318.1 1668 0.0
> Ahg925757 jgi|Araly1|925757|scaffold_201318.1
Length=1131
Score = 1668 bits (903), Expect = 0.0
Identities = 1062/1138 (93%), Gaps = 14/1138 (1%)
Strand=Plus/Plus
Query 60 aaaaacaaaaga-acacaac-atgagtgacactaaaacGGTGCGTTTTGGTCTTCTTGGA 117
||||| |||| | |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAAAA-AAAA-ACACACCACAATGAGTGACACTAAAACGGTGCGTTTTGGTCTTCTTGGA 61
Query 118 TGTATCAGATTCGCATCAAAGTTCGTCAGAACAGTAACAGAATCCTCAAACGCCGTCATT 177
|| |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 62 TGCATCAGATTCGCATCAAAGTTTGTAAGAACAGTAACACAATCCTCAAACGCCGTCATT 121
Query 178 ATCGCCATCAGCGATCCATCACTCGAAACCGCAAAAACCTTCGCCACCGGGAACAATTTA 237
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 122 ATCGCCATCAGCGATCCATCACTCGAAACAGCAAAAACCTTCGCCGCCACCAACAATTTA 181
Query 238 TCGCCGGAGACCGTCACGATATACGGAAGCTACGAGGAGCTTTTAAACGATGCAAACGTC 297
|||||||| ||||||| ||||||||||||||||| || || |||||||||| |||||
Sbjct 182 TCGCCGGAAACCGTCATAATATACGGAAGCTACGAAGAACTACTAAACGATGCCAACGTT 241
Query 298 GACGCCGTTTACTTGACGATGCCGGTGACGCAACGAGCGAGATGGGCTGTGACGGCGGCA 357
||||||||||||||||||||||||||||| ||||||| || |||||| ||||||||||||
Sbjct 242 GACGCCGTTTACTTGACGATGCCGGTGACACAACGAGGGAAATGGGCGGTGACGGCGGCA 301
Query 358 GAGAAGAAGAAGCATGTTCTTGTTGAGAAACCACCAGCTCAAGACGCGACGGAGCTGGAG 417
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 302 GAGAACAAGAAGCATGTTCTTGTTGAGAAACCACCGGCTCAAGACGCGACGGAGCTGGAG 361
Query 418 AAGATTGTGGAGGCGTGTGAATATAACGGTGTTCAGTTTATGGACGGTACGATTTGGTTG 477
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 362 AAGATTGTGGAGGCGTGTGAATCTAACGGTGTTCAGTTTATGGACGGTACGATTTGGTTG 421
Query 478 CATCATCAACGGACGGTTAAGATTAGAGATACGATGTTTGATTCTGGATTGCTTGGAGAT 537
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 422 CATCATCAACGGACGGTTAAGATTAGTGATACGATGTTTGATTCTGGATTGCTTGGAGAT 481
Query 538 GTTCGCCACATGTATAGCACGATGACCACTCCGGTACCGGAGCAAGTATTGGAAAGACTG 597
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 482 GTTCGCCACATGTATAGCACGATGACTACTCCGGTACCGGAGCAAGTGCTGGAAAGACTG 541
Query 598 ACTAAAGAAGCTATGGGTTTAGCCGGAGCTATCGGAGAGCTTGGATGGTATCCTATAGGC 657
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 542 ACTAAAGAAGCTATGGGTTTAGCCGGAGCTATAGGAGAGCTTGGGTGGTACCCTATAGGT 601
Query 658 GCAGCTTTGTGGGCTATGTCTTACCAAATGCCGATATCGGTCAGGGCTCTTCCCTCCTCT 717
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 602 GCAGCTTTATGGGCTATGTCTTACCAAATGCCGATATCGGTTAGGGCTCTTCCCTCCTCT 661
Query 718 GTCTCCACAAACTCGGTTGGCACTATCTTGTCCTGCACTGCCTCTCTTCAGTTCGGTTCA 777
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 662 GTCTCCACAAACTCGGTTGGCACTATCTTGTCCTGCACTGCCTCTCTTGAGTTCGGTTCA 721
Query 778 ACTGCAACCACAACCGCAATCGTTCATTGCTCTTTCCTCTCTCAACTTTCAACGGACTTA 837
|| |||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 722 ACCGCAACC------GCAATTGTCCATTGCTCTTTCCTCTCTCAACTTTCAACCGACTTA 775
Query 838 GCTATCTCAGGCTCAAAAGGGTCGATTCAAATGAATGACTATGTGATACCCTACAAGGAG 897
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GCTATCTCAGGATCAAAAGGGTCGATTCAAATGAATGACTATGTGATACCCTACAAGGAG 835
Query 898 GACAAAGCTTGGTTCGAATACACAAGTGGTGCGAAGTTTGTGGACATGCACATTGGTTGG 957
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 836 GACACAGCTTGGTTCGAATACACATGTGGTGCGAAGTTTGTGGACATGGACATTGGTTGG 895
Query 958 AATGTGACGCCAGAGAGAGTTACAGTGGACTGTAGCGGAACTCCGGAGACGCAAGAGGCA 1017
|||||||| || |||| |||||||||||||||| |||||||| |||| ||||||||||||
Sbjct 896 AATGTGACACCGGAGAAAGTTACAGTGGACTGTGGCGGAACTGCGGATACGCAAGAGGCA 955
Query 1018 ATGATGCTGAGAGAGTTCACGCGGCTTGTGGAAGGAATCAAGCGTGGCGACTTAGAGGCT 1077
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 956 ATGATGCTGAGAGAGTTCACGCGGCTTGTCGAAGGAATCAAGCGGGGCGATTTAGAGGCT 1015
Query 1078 GATCGTAGGTGG-CCG-GATATAAGTAAGAAGACGCAGTTGATCGTTGATGCTGTAAAGA 1135
|||||||||||| ||| ||| || ||||||||||||||||| ||||||||||||| ||||
Sbjct 1016 GATCGTAGGTGGGCCGAGAT-TA-GTAAGAAGACGCAGTTGGTCGTTGATGCTGTGAAGA 1073
Query 1136 AATCTGTTGATATTGGTTGTGAAGTGGTTCATCTGTGAAACTTGTTGAAATCTTCTGC 1193
|||||||||| ||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1074 AATCTGTTGACATTAATTGTGAAGTGGTTCATCTGTAAAACTTGTTGATATTTTCTGC 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5