BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66140.1
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475716 jgi|Araly1|475716|fgenesh2_kg.2__846__AT1G66140.1 1467 0.0
> Ahg475716 jgi|Araly1|475716|fgenesh2_kg.2__846__AT1G66140.1
Length=1146
Score = 1467 bits (794), Expect = 0.0
Identities = 1074/1198 (90%), Gaps = 64/1198 (5%)
Strand=Plus/Plus
Query 1 ACTCTCTCCTCTTTTGTGCTCCCAAACCAAACATAACACTCACAATTTAActctctctgt 60
|||||||||||||||||||||||||||||||||| | | | | ||| || |
Sbjct 1 ACTCTCTCCTCTTTTGTGCTCCCAAACCAAACAT---A-T--C------A--CTCACT-T 45
Query 61 ctctctctcatatctctcacttcttctctttcttTTTAAGTCCCC-AAAATAACCTCGAG 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 46 CTCTCTCTCATATCTCTCACTTCTTCTCTTTCTTTTTAAGTCCCCAAAAATAACCTCGCT 105
Query 120 ATCGATGGACTCAAATCTGTTCATAACTCCCACTTCTTCTCTCAAATCCCAAGCCTTGGT 179
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||
Sbjct 106 ATCGATGGACTCAAATCTGTTCATAACTCCTAGTTCTTCTCTCAAATTCCAAGCCTTTGT 165
Query 180 CTCTTCATCATCCTAACTATATAAGaaaaag-aaaaaaCAACGTAAAGTTTCTGCCATAA 238
||| |||||||||||||||| |||||| | |||||||||||| |||||||||||| ||
Sbjct 166 CTCCTCATCATCCTAACTAT-GCAGAAAACGAAAAAAACAACGTTAAGTTTCTGCCAGAA 224
Query 239 ATCATGAGACCAATATTAGACCTCGAAATTGAAGCTTCATCGGGCAGTAGTAGCAGCCAA 298
||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 225 ATCATGAGACCAATATTAGACCTCGAAGTTGAAGCTTCATCGGACAGTAGCAGCAGCCAA 284
Query 299 GTGGCCTCAAACTTGTCTCCGGTTGGGGAAGATTACAAACCAATCTCGCTGAATCTTAGC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GTGGCCTCAAACTTGTCTCCGGTTGGGGAAGATTACAAACCAATCTCGCTGAATCTTAGC 344
Query 359 CTCAGTTTcaacaacaacaacaacaaTAATCTGGATCTTGAATCATCGTCTTTGACGCTG 418
||| ||| |||||||||| ||||| |||||||||||||||||||||||| ||
Sbjct 345 CTCTCTTT------CAACAACAAC---AATCTTGATCTTGAATCATCGTCTTTGACGTTG 395
Query 419 CCACTTTCGAGCACGAGTGAGAGTAGTAACCCGGAGCAGCAGCAGCAACAACAACCATCT 478
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 396 CCACTTTCGAGCACGAGTGAGAGTAGCAACCCGGAACAGCAACAGCAACAACAACCGTCA 455
Query 479 GTATCAAAGAGAGTCTTCTCTTGTAACTACTGCCAAAGGAAGTTCTATAGCTCTCAAGCG 538
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GTATCGAAGCGAGTCTTTTCTTGTAACTACTGCCAAAGGAAGTTCTATAGCTCTCAAGCC 515
Query 539 CTAGGTGGTCACCAAAACGCTCACAAACGTGAGAGAACACTCGCCAAACGCGCTATGCGT 598
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 516 CTTGGTGGTCACCAAAACGCTCATAAACGTGAGAGAACACTCGCCAAACGCGCTATGCGT 575
Query 599 ATGGGTCTTGCTGGGGTCTTCCCCGGTAGAGGATCAAGTAGCAATTATGCGGCTGCTGCC 658
|||||||| ||||||||||||||| |||||||||||||||| | || | || ||||||
Sbjct 576 ATGGGTCTCGCTGGGGTCTTCCCCAGTAGAGGATCAAGTAGTAGCTA--C-GCGGCTGCC 632
Query 659 ACAGCAGCCGCTCTCTCGTGTTTGCCGCTTCACGGAAGCGGAAACGGGAACATGACATCG 718
|||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||
Sbjct 633 ACAGCAGCCGCTCTCTCGTGTTTGCCACTTCATGGAAGCGGAAACGGTAATATGACATCA 692
Query 719 TTCAGGACTTTGGGAATCCGGGCACATTCCTCGGCGCACGACGTCAGCATGACAAGGCAG 778
||||||||||||||||| ||||||||| ||||| | ||||||||| ||||||||||||||
Sbjct 693 TTCAGGACTTTGGGAATTCGGGCACATGCCTCGTCCCACGACGTCGGCATGACAAGGCAG 752
Query 779 ACACCAGAAAC-ACTTATTAGAAACATTGCCAGGTTCAACCAGGGGTATTTCGGTAATTG 837
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 753 ACACCAGAAACGA-TTATTAGAAATATTGCCAGGTTCAACCAGGGGTATTTCGGTAATTG 811
Query 838 TATACCTTTTTACGTGGAGGACGACGAGGCCGAGATGCTCTGGCCGGGGAGTTTCCGGCA 897
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 812 TATACCTTTTTACGTTGAGGACGACGAGGCCGAGATGCTCTGGCCAGGGAGTTTCAGGCA 871
Query 898 AGCTACGAATGCGGTTGCGGTTGAAGCGGGTAATGATAATTTAGGTGAAAGAAAAATGGA 957
||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 872 AGCAACGGATGCGGTTGCGGTTGAAGCGGGTAATGATGATTTAGGTGAAAGAAAAATGGA 931
Query 958 TTTCTTGGACGTCAAGCAAGCGATGGATATGGAAAGTTCTCTTCCAGATCTAACCTTGAA 1017
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 932 TTTCTTGGACGTCAAGCAAGCGGTGGATATGGAGAGTTCTCTTCCAGATCTAACCTTGAA 991
Query 1018 GCTTTGAGCTTTCGttttttttgtttttttttttGCTGAATTTGGATTCTTAATTTGG-T 1076
||||||| | ||| |||||| |||||||||||||||| |
Sbjct 992 ACTTTGAG----C------------------TTT-CTGAATGTGGATTCTTAATTTGGTT 1028
Query 1077 GCATCAGCTTCATAACTCTATTATGTACAGTGAGAGTTTCACAAACCATTTCTGATATGT 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1029 GCATCAGCTTCATAACTCTATTATGTACAGTGAGAGTTTCACAAACCATTTCCGATATGT 1088
Query 1137 TAT--------GGTCACTATCGATTGATCGACCAAAAGTCAATTCTAGTGTTTGCTTA 1186
||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1089 TATCATTATATGGTCACTATCGATTGATCGACTAAAAGTCAATTCTAGTGTTTGCTTA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46700573325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5