BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66150.1
Length=3257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475717 jgi|Araly1|475717|fgenesh2_kg.2__847__AT1G66150.1 4689 0.0
> Ahg475717 jgi|Araly1|475717|fgenesh2_kg.2__847__AT1G66150.1
Length=3226
Score = 4689 bits (2539), Expect = 0.0
Identities = 3036/3270 (93%), Gaps = 57/3270 (2%)
Strand=Plus/Plus
Query 1 GGCCCATCTTCCCATTTCCTAAAAGcttcaaactttcttcacatttctctctttatctct 60
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 1 GGCCCATCTTCCCATTTCCTAAAAGCTTCAAACTTTATTCACACTTCTCTCTCTATCTCT 60
Query 61 ctgtttcttcttcaatcctctgtttcttcAAGCTATGAAGAAAAGAAGAACctttcttct 120
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTGTTTCCTCTTC-TTCCTCTGTTTCTTCAAGCTATGAAGAAAAGAAGAACCTTTC-TC- 117
Query 121 attttcatttacctttcttcttcttctatctctttctAAAGCTGATTCTGATGGAGATCT 180
| | ||| | || | | | | | ||| | | |||| |||| ||||||||||||||
Sbjct 118 A----CGTTT-TCGTT-TAC--C-T-T-TCT-TCT-TAAATCTGACTCTGATGGAGATCT 164
Query 181 CTCAGCGATGTTATCACTCAAGAAAAGCTTAAACCCACCCAGTTCTTTCGGTTGGTCTGA 240
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 165 CTCAGCGATGATATCACTCAAGAAAAGCTTAAACCCACCAAGTTCTTTCGGTTGGTCTGA 224
Query 241 CCCTGACCCATGTAAATGGACTCACATCGTTTGTACAGGAACAAAACGTGTGACCCGGAT 300
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 225 CCCAGACCCGTGTAAATGGACTCACATCGTTTGTACCGGAACAAAACGTGTGACCCGGAT 284
Query 301 CCAAATCGGGCATTCGGGTCTTCAAGGTACACTTTCTCCTGATCTACGTAACTTATCAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CCAAATCGGGCATTCGGGTCTTCAAGGTACACTTTCTCCTGATCTACGTAACTTATCAGA 344
Query 361 GCTTGAAAGACTTGAGCTTCAATGGAACAACATCTCTGGTCCTGTTCCTTCTTTAAGTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GCTTGAAAGACTTGAGCTTCAATGGAACAACATCTCTGGTCCTGTTCCTTCTTTAAGTGG 404
Query 421 TTTAGCTTCATTACAAGTCTTGATGTTAAGTAACAACAACTTTGATTCTATCCCTAGTGA 480
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 405 TTTAGCTTCATTACAAGTCTTGATGTTAAGTAATAACAACTTTGATTCAATCCCTAGTGA 464
Query 481 TGTCTTTCAAGGTTTAACTTCGTTACAATCTGTAGAAATTGATAACAATCCTTTTAAGAG 540
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 465 TGTCTTTGAAGGCTTAACTTCGTTACAATCTGTAGAAATTGATAACAATCCTTTTAA-AG 523
Query 541 -TTGGGAGATTCCAGAGAGTTTGAGAAATGCTTCTGCTCTTCAGAATTTCTCTGCTAATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 524 CTTGGGAGATTCCAGAGAGTTTGAGAAATGCTTCTGCTCTTCAGAATTTCTCGGCGAATT 583
Query 600 CGGCTAATGTTTCCGGTTCTTTACCCGGTTTTCTCGGACCGGATGAGTTTCCCGGTTTGT 659
||||||||||||||||| |||||||||||| ||||||||||||||||||| || ||||
Sbjct 584 CGGCTAATGTTTCCGGTAAATTACCCGGTTTTTTCGGACCGGATGAGTTTCCGGGGTTGT 643
Query 660 CGATTTTGCATTTGGCTTTCAACAACTTAGAAGGAGAGTTGCCTATGAGTTTAGCTGGCT 719
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 644 CGATTTTGCATTTGGCTTTCAATAACTTAGAAGGAGAGTTGCCTTTGAGTTTAGCTGGCT 703
Query 720 CTCAGGTTCAGTCATTGTGGCTCAATGGTCAGAAACTAACCGGTGATATTACTGTTCTTC 779
| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct 704 CGCAGGTTCAGTCATTGTGGCTTAATGGTCAGAAACTAACCGGTGAGATTAATGTTCTTC 763
Query 780 AGAACATGACTGGTTTAAAAGAGGTTTGGCTTCACTCCAACAAGTTTTCGGGTCCTTTAC 839
|||| ||||||||||| |||||||||||| |||| |||||| |||||||||||||||||
Sbjct 764 AGAATATGACTGGTTTGAAAGAGGTTTGGGTTCATTCCAACGCGTTTTCGGGTCCTTTAC 823
Query 840 CGGACTTTTCGGGTCTTAAGGAGCTTGAGAGCTTGAGTTTGAGAGATAACTCCTTTACAG 899
||||||||||||||||||||||||||||||| ||||||||||| |||||| | || || |
Sbjct 824 CGGACTTTTCGGGTCTTAAGGAGCTTGAGAGTTTGAGTTTGAGGGATAACGCGTTCACGG 883
Query 900 GTCCAGTTCCTGCGTCTTTGTTAAGTCTTGAGTCACTTAAAGTTGTGAACTTGACGAATA 959
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 884 GTCCGGTTCCTGCGTCTTTGTTAAGTCTTGAGTCGCTTAAAGTTGTGAACTTGACGAATA 943
Query 960 ATCATCTACAAGGACCAGTGCCTGTGTTTAAGAGCTCTGTTTCAGTTGATTTGGATAAAG 1019
||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 944 ATCATCTTCAAGGACCAGTTCCTGTGTTTAAGAGCTCGGTTTCGGTTGATTTGGATAAAG 1003
Query 1020 ATTCTAACAGCTTTTGCTTGTCTAGTCCTGGTGAGTGTGATCCTAGAGTGAAGTCTTTGC 1079
|||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1004 ATTCCAATAGCTTTTGCTTGTCTAGTCCTGGTGAGTGTGATTCTAGAGTGAAGTCTTTGC 1063
Query 1080 TTTTGATAGCTAGTTCATTCGATTATCCGCCCCGGCTCGCTGAGAGTTGGAAAGGAAACG 1139
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct 1064 TTTTGATAGCTAGTTCATTTGATTATCCGCAGCGGCTCGCTGAGAGTTGGAAAGGAAATG 1123
Query 1140 ATCCTTGTACTAACTGGATTGGGATAGCTTGTAGCAATGGGAACATTACTGTTATCAGTC 1199
||||||| || || ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1124 ATCCTTGCACGAATTGGATTGGGATAGCTTGTAGCAATGGGAACATTACTGTTATTAATC 1183
Query 1200 TTGAGAAAATGGAACTAACCGGGACGATTTCTCCCGAGTTTGGAGCGATCAAGTCGCTTC 1259
|||||||||||| |||||||||||||||||||||||||||||| | || || |||||||
Sbjct 1184 TTGAGAAAATGGGTCTAACCGGGACGATTTCTCCCGAGTTTGGATCCATTAAATCGCTTC 1243
Query 1260 AAAGAATCATTCTTGGTATCAACAATCTTACTGGTATGATTCCTCAAGAGCTTACAACGT 1319
||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 1244 AAAGAATCATTCTTGGTATCAACAATCTTACGGGTACGATTCCTCAAGAGCTAACAACGT 1303
Query 1320 TACCTAATCTCAAAACACTCGATGTTTCGAGTAACAAGCTTTTCGGGAAGGTCCCGGGTT 1379
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1304 TACCAAATCTCAAAACACTCGATGTTTCGAGTAACAAGCTTTTCGGGAAGGTCCCAGGTT 1363
Query 1380 TTAGAAGCAATGTTGTTGTGAATACTAATGGTAATCCTGACATTGGAAAGGATAAAAGCT 1439
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TTAGAAGCAATGTGGTTGTGAGTACTAATGGTAATCCTGACATTGGAAAGGATAAAAGCT 1423
Query 1440 CTTTGTCTTCTCCTGGTTCTTCTTCGCCTTCAGGTGGTTCGGGTTCAGGTATCAACGGTG 1499
||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1424 CTTTGCCTTCTCCCGGTTCTTCTTCGCCTTCAGGTGGTTCGGGGTCAGGAATCAACGGTG 1483
Query 1500 ATAAAGACCGGAGAGGAATGAAGTCTTCGACTTTTATAGGAATCATTGTTGGTTCAGTTC 1559
|||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1484 ATAAGGACAGGAGAGGAATGAAGTCTTCGACTTTTATAGGTATCATTCTTGGTTCAGTTC 1543
Query 1560 TTGGAGGTTTGTTATCAATCTTCTTGATTGGTTTGTTAGTTTTCTGTTGGTACAAAAAGA 1619
|||||||| | | |||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 1544 TTGGAGGTCTATCATCAATCTTCATGATTGGTTTATTAGTTTTCTGCTGGTACAAAAAGA 1603
Query 1620 GGCAGAAGAG-ATTCTCAGGAAGTGAGAGCTCAAATGCAGTAGTGGTGCATCCGCGACAT 1678
|||| ||| | | | || || ||||||||||||||||||| ||||||||||||||||||
Sbjct 1604 GGCAAAAGTGTAA-CACAAGAGGTGAGAGCTCAAATGCAGTTGTGGTGCATCCGCGACAT 1662
Query 1679 TCGGGGTCTGACAATGAGAGTGTTAAGATTACAGTTGCGGGTTCAAGCGTAAGCGTTGGA 1738
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1663 TCGGGGTCTGACAATGAGAGCGTTAAGATCACAGTTGCGGGTTCAAGTGTAAGCGTTGGA 1722
Query 1739 GGGATAAGTGATACTTATACGCTTCCTGGTACAAGTGAGGTTGGAGATAATATTCAAATG 1798
|| ||||||||||| || |||||||||||||| || ||||| ||||||||||| ||||||
Sbjct 1723 GGCATAAGTGATACCTACACGCTTCCTGGTACGAGCGAGGTAGGAGATAATATCCAAATG 1782
Query 1799 GTGGAAGCAGGAAACATGCTGATATCAATCCAAGTGCTTCGTTCTGTGACTAACAACTTC 1858
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1783 GTGGAAGCAGGAAACATGCTGATCTCAATCCAAGTGCTTCGTTCTGTGACTAACAACTTC 1842
Query 1859 AGTTCAGATAACATTCTTGG-ATCAGGAGGTTTCGGGGTTGTGTATAAAGGCGAGTTGCA 1917
||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1843 AGTGCAGATAACATT-TTGGGATCAGGAGGTTTCGGGGTTGTGTATAAAGGCGAATTGCA 1901
Query 1918 CGATGGAACGAAGATTGCGGTTAAGAGAATGGAGAATGGAGTTATTGCTGGTAAAGGCTT 1977
||||||||| ||||| ||||||||||||||||||||||| || |||| ||||||||| ||
Sbjct 1902 CGATGGAACAAAGATCGCGGTTAAGAGAATGGAGAATGGTGTGATTGTTGGTAAAGG-TT 1960
Query 1978 T-GCGGAGTTTAAATCAGAGATTGCGGTTTTAACAAAGGTTAGGCATCGTCATTTGGTTA 2036
| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1961 TCGCGGAGTTCAAGTCAGAGATTGCGGTTTTAACAAAGGTTAGGCATCGCCATTTGGTTA 2020
Query 2037 CGCTTCTTGGTTATTGTTTGGATGGGAATGAGAAGTTACTTGTGTATGAGTATATGCCTC 2096
||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 2021 CGCTTCTCGGTTATTGTTTGGACGGGAACGAGAAGCTACTTGTGTATGAGTATATGCCTC 2080
Query 2097 AAGGGACATTGAGTAGGCATTTGTTTGAGTGGTCAGAGGAAGGACTTAAGCCTCTGTTGT 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2081 AAGGGACATTGAGTAGGCATTTGTTTGAGTGGTCAGAGGAAGGACTTAAGCCTCTGTTGT 2140
Query 2157 GGAAACAGAGATTGACTTTAGCTTTGGATGTTGCTAGAGGTGTGGAGTATCTCCATGGAT 2216
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2141 GGAAACAGAGATTGACTTTAGCCTTGGATGTTGCAAGAGGTGTGGAGTATCTCCATGGAT 2200
Query 2217 TAGCTCACCAGAGCTTTATACACAGGGATCTTAAGCCTTCTAACATTCTTCTTGGGGATG 2276
|||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||
Sbjct 2201 TAGCTCACCAGAGCTTCATTCACAGGGATCTTAAGCCTTCCAACATTCTTCTTGGCGATG 2260
Query 2277 ATATGAGGGCGAAAGTTGCAGACTTTGGACTCGTTCGTCTCGCTCCTGAAGGAAAAGGAT 2336
||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2261 ATATGCGGGCGAAAGTTGCAGACTTTGGACTCGTTCGTCTCGCTCCAGAAGGGAAAGGAT 2320
Query 2337 CGATTGAGACTAGAATCGCTGGAACATTTGGTTACTTGGCACCCGAATACGCAGTAACGG 2396
||||||| || ||||| || |||||||||||||||||||| ||||| || ||||||||||
Sbjct 2321 CGATTGAAACCAGAATTGCAGGAACATTTGGTTACTTGGCGCCCGAGTATGCAGTAACGG 2380
Query 2397 GTCGAGTGACAACGAAGGTCGATGTATACAGCTTCGGGGTAATCCTAATGGAACTCATAA 2456
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 2381 GTCGAGTGACAACGAAGGTCGATGTGTACAGTTTCGGGGTAATTCTAATGGAACTCATAA 2440
Query 2457 CGGGAAGAAAATCTCTAGACGAATCGCAACCAGAAGAAAGCATTCACTTGGTCTCTTGGT 2516
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 2441 CAGGAAGAAAATCTCTAGACGAATCGCAACCAGAAGAGAGCATTCACTTAGTCTCCTGGT 2500
Query 2517 TCAAACGGATGTACATCAACAAAGAAGCATCATTCAAGAAAGCGATCGACACGACAATAG 2576
|||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct 2501 TCAAACGGATGTACATCAACAAAGAATCATCATTCAAGAAAGCAATCGACCCGACAATAG 2560
Query 2577 ACCTAGACGAAGAAACCTTAGCCAGCGTTCACACTGTTGCTGAACTAGCAGGCCATTGCT 2636
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2561 ACCTAGACGAAGAAACCCTAGCCAGCGTTCACACTGTTGCTGAACTAGCAGGCCATTGCT 2620
Query 2637 GTGCCCGTGAGCCTTACCAGAGACCAGACATGGGACACGCAGTCAACATTCTGTCATCAC 2696
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2621 GTGCCCGTGAACCATACCAGAGACCAGACATGGGACACGCAGTCAACATTCTGTCTTCAC 2680
Query 2697 TCGTTGAGCTATGGAAACCGTCGGATCAGAATCCAGAAGACATATATGGTATCGATCTCG 2756
|||| |||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 2681 TCGTCGAGCTATGGAAACCATCGGATCAGAACCCTGAAGACATATACGGTATCGATCTCG 2740
Query 2757 ACATGTCTTTACCTCAAGCACTTAAGAAATGGCAAGCTTATGAAGGAAGAAGTGATCTCG 2816
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2741 ACATGTCTTTGCCACAAGCACTTAAGAAATGGCAAGCTTATGAAGGAAGAAGTGATCTCG 2800
Query 2817 AATCTTCAACTTCATCACTTTTACCTAGCTTGGACAACACGCAGATGAGTATTCCCACTA 2876
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2801 AATCTTCGACTTCATCGCTTTTACCTAGCTTGGACAACACGCAGATGAGTATTCCCACTA 2860
Query 2877 GACCTTACGGATTCGCAGAGTCATTCACTTCAGTAGATGGACGATGAATGAGAGATTCCT 2936
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2861 GACCATACGGATTCGCAGAGTCATTCACTTCAGTAGATGGACGATGAATGAGATTTTC-T 2919
Query 2937 TGAAACCCAGATTTGATTTTTCTCCTTTTGTATATTTGTGTTTCCTCTCCTCTTCTTCCC 2996
|| |||| | | | | || || |||||||||||||||||||||||
Sbjct 2920 -----CCT---TTTG-TATAT-T--------AT-TT-GTGTTTCCTCTCCTCTTCTTCCC 2959
Query 2997 CTCACAATTCTTTCATGTTTCTTGTGATGCAAGTAACATTTAGGGCTTAATTTGGGTGTC 3056
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2960 -TCACAATTCTTTCATGTTTCTTGTGATGCAAGTAACATTTAGGGCTTAATTTGGGTTTC 3018
Query 3057 TTAAT-ATTATTTTGATGTTGAGTGTTTTATTTG-TTG---GTTT-GTTGATTTAGAAAA 3110
||||| | ||||| ||||||||||||||||||| || |||| ||||||||||||||
Sbjct 3019 TTAATTAGTATTT-GATGTTGAGTGTTTTATTTTATTTTTTGTTTTGTTGATTTAGAAAA 3077
Query 3111 GTTGACGTGTGTACTTCAAGTTTGTG-GGAAATGGTAAATGACAGTGAGGTAGAGAG-G- 3167
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 3078 GTTGACGTGTGTACTTAAAGTTTGTTTGGAAATGGTAAATGACAGTGAGGTAGAGAGAGG 3137
Query 3168 TTGGCATTGGATCCATCTTCACATGGCTGTCTCTTTTGTTTGGATCTTCATTTTTTAAAT 3227
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3138 TTGGCTTTGGATCCATCTTCACATGGCTGTCTCTTTTGTTTGGATCTTCATTTTTTAA-T 3196
Query 3228 ATCTTTATAAATTGACATCAACTTGATCTC 3257
||||||||||||||||||| ||||||||||
Sbjct 3197 ATCTTTATAAATTGACATCTACTTGATCTC 3226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122925960790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5