BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66200.3
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475723 jgi|Araly1|475723|fgenesh2_kg.2__853__AT1G66200.1 1639 0.0
Ahg947410 jgi|Araly1|947410|scaffold_703639.1 942 0.0
> Ahg475723 jgi|Araly1|475723|fgenesh2_kg.2__853__AT1G66200.1
Length=1429
Score = 1639 bits (887), Expect = 0.0
Identities = 1131/1240 (91%), Gaps = 51/1240 (4%)
Strand=Plus/Plus
Query 46 GTACTACCACAACCACGAACTCTAAAGCATCATCTCATTAACAAAAATAAAACACACAAT 105
|||||||||||||||||||||| ||| |||||||||| | | || | ||||||||||||
Sbjct 1 GTACTACCACAACCACGAACTCCAAAACATCATCTCA-T-A-AACCA-AAAACACACAAT 56
Query 106 CTCAAGATTTTCTACTTCTTATTACAAAGATTCAATCTTCTTGTTTCTTCTTGCAACCAT 165
||| | | |||||||||| |||||||||||||| ||| ||||||||||
Sbjct 57 CTC---A------A------ATTACAAAGAATCAATCTTCTTGTTCCTTTTTGCAACCAT 101
Query 166 GAGTCTTCTTGCAGATCTTGTTAACCTTGACATCTCAGACAACAGTGAAAAGATCATCGC 225
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 102 GAGTCTTCTTGCAGATCTTGTTAACCTTGACCTCTCAGACAACAGTGAAAAGATCATCGC 161
Query 226 TGAATACATATGGGTTGGTGGTTCTGGTATGGACATGAGAAGCAAAGCCAGGACTCTCCC 285
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 162 TGAATACATATGGGTTGGTGGTTCTGGTATAGACATGAGAAGCAAAGCCAGGACTCTATC 221
Query 286 TGGACCTGTGACCGATCCATCAAAACTTCC-AAAGTGGAACTATGATGGTTCAAGCACTG 344
|| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 222 AGGTCCTGTGACCGATCCATCGAAACTTCCGAAA-TGGAACTATGATGGTTCAAGCACTG 280
Query 345 GTCAAGCTCCTGGTCAAGACAGTGAAGTGATCTTATACCCTCAAGCAATTTTCAAAGATC 404
|||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 281 GTCAAGCTCCTGGTAAAGATAGTGAAGTGATCTTATACCCTCAAGCGATTTTCAAAGATC 340
Query 405 CATTCCGTAGAGGCAACAACATCCTTATTAACGTTTTTTATCGGTTTGATCAGGTTATGT 464
| |||||||||||||||||||| ||| ||| || | | |||| | |||
Sbjct 341 CGTTCCGTAGAGGCAACAACATTCTT------GTT----AT-G-TGTGAT--GCTTAC-- 384
Query 465 GTGATGCTTACACTCCAGCGGGAGAGCCAATCCCTACTAACAAGCGACATGCTGCGGCTG 524
| || | || ||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 385 ---A--CT--C-CT---GCGGGCGAGCCAATCCCTACGAACAAGCGACATGCTGCAGCTG 433
Query 525 AGATCTTTGCTAACCCTGATGTTATTGCTGAAGTGCCATGGTATGGAATCGAACAAGAAT 584
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 434 AGATCTTTGCTAACCCTGCTGTTGTAGCTGAAGTGCCATGGTATGGAATCGAACAAGAAT 493
Query 585 ACACTTTGTTGCAGAAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCTTCCCTG 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 494 ACACTTTGTTGCAGAAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCTACCCTG 553
Query 645 GCCCTCAGGGACCATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGAGACATTG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GCCCTCAGGGACCATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGAGACATTG 613
Query 705 TTGATGCTCACTACAAAGCCTCTTTGTATGCTGGAATCAACATCAGTGGGATCAATGGAG 764
|||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 614 TTGATGCTCACTACAAGGCTTGTTTGTATGCTGGAATCAACATCAGTGGGATCAATGGAG 673
Query 765 AAGTCATGCCGGGACAATGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTCAGCTGCTG 824
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 674 AAGTCATGCCGGGTCAGTGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTCAGCTTCTG 733
Query 825 ATGAAATATGGATCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTTG 884
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 ATGAAGTGTGGATCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTTG 793
Query 885 TATCTTTTGACCCAAAACCTATTCCTGGTGACTGGAATGGAGCTGGTGCTCACACCAATT 944
||||||||||||| ||||| || || ||||| ||||| |||||||||||||||||||| |
Sbjct 794 TATCTTTTGACCCGAAACCGATCCCGGGTGATTGGAACGGAGCTGGTGCTCACACCAACT 853
Query 945 ACAGTACTAAATCAATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGCGATCGAGA 1004
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 854 ACAGTACTAAATCGATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGCGATTGAGA 913
Query 1005 AGCTTGG-CTTGAGACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGTCGT 1063
|||| || || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 914 AGCTCGGACTA-AGACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGCCGT 972
Query 1064 CTCACGGGACACCATGAAACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGT 1123
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 973 CTCACGGGACACCATGAAACCGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGT 1032
Query 1124 GGTGCATCGATCCGAGTAGGACGTGACACCGAGAAAGAAGGGAAGGGATACTTTGAGGAT 1183
|| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1033 GGAGCATCGATCCGAGTAGGACGCGATACCGAGAAAGAAGGGAAAGGATACTTTGAGGAT 1092
Query 1184 AGGAGGCCAGCTTCAAACATGGACCCTTACGTTGTTACTTCCATGATTGCAGAGACTACA 1243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1093 AGGAGGCCAGCTTCAAACATGGACCCTTACATTGTTACTTCCATGATTGCAGAGACTACA 1152
Query 1244 CTCCTCTGGAACCCTTGAAA-GGATGATCCGTAACTCTTG 1282
||||||||||| |||||||| ||||||||| ||| |||||
Sbjct 1153 CTCCTCTGGAAACCTTGAAAAGGATGATCCATAAATCTTG 1192
> Ahg947410 jgi|Araly1|947410|scaffold_703639.1
Length=1166
Score = 942 bits (510), Expect = 0.0
Identities = 710/807 (88%), Gaps = 12/807 (1%)
Strand=Plus/Plus
Query 461 ATGTGTGATGCTTACACTCCAGCGGGAGAGCCAATCCCTACTAACAAGCGACATGCTGCG 520
|||||||||||||||||||| ||||| || |||||||| || ||||| |||| ||||||
Sbjct 344 ATGTGTGATGCTTACACTCCCGCGGGTGAACCAATCCCGACAAACAAAAGACACGCTGCG 403
Query 521 GCTGAGATCTTT-GCTAACCCTGATGTTATTGCTGAAGTGCCATGGTATGGAATCGAACA 579
||| || ||||| || ||||||||||| |||||||||||||||||||| || || ||
Sbjct 404 GCTAAGGTCTTTAGC-CACCCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCA 462
Query 580 AGAATACACTTT-GTTGCAGAAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCT 638
||| |||||||| || ||||| |||||||| ||||| |||| ||||| ||||| || |
Sbjct 463 AGAGTACACTTTACTT-CAGAAAGATGTGAAGTGGCCAGTTGGTTGGCCTATTGGCGGTT 521
Query 639 -TCCCTGGCCCTCAGGGACCATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGA 697
|||| |||||||||||||| ||||| ||| |||||||||| |||||||||||||| |||
Sbjct 522 ATCCC-GGCCCTCAGGGACCGTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGGAGA 580
Query 698 GACATTGTTGATGCTCACTACAAAGCCT-CTTTGTATGCTGGAATCAACATCAGTGGGAT 756
|| |||||||| |||||||||| |||| | || || ||||| |||||||| ||||| ||
Sbjct 581 GATGTTGTTGATTCTCACTACAAGGCCTGC-TTATACGCTGGTATCAACATTAGTGGTAT 639
Query 757 CAATGGAGAAGTCATGCCGGGACAATGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTC 816
||||||||||||||||||||| || ||||||||||| ||||| ||| | || ||||||||
Sbjct 640 CAATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTC 699
Query 817 AGCTGCTGATGAAATATGGATCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGG 876
|| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GGCCGCTGATGAAATTTGGGTCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGG 759
Query 877 TGTGGTTGTATCTTTTGACCCAAAACCTATTCCTGGTGACTGGAATGGAGCTGGTGCTCA 936
|||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 760 TGTGGTGGTATCTTTCGACCCGAAACCGATTCCTGGTGACTGGAATGGTGCTGGTGCTCA 819
Query 937 CACCAATTACAGTACTAAATCAATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGC 996
| ||| |||||||| || ||||||||||||||||| || |||||||| |||||||||||
Sbjct 820 CTGCAACTACAGTACCAAGTCAATGAGGGAAGAAGGGGGTTACGAGATTATCAAGAAGGC 879
Query 997 GATCGAGAAGCTT-GG-CTTGAGACACAAGGAACACATTTCCGCTTACGGTGAAGGAAAC 1054
||||| || || || | |||||||||| ||||||||| | |||||||||||||| ||
Sbjct 880 AATCGATAA-ATTGGGAC-TGAGACACAAAGAACACATTGCGGCTTACGGTGAAGGCAAT 937
Query 1055 GAGCGTCGTCTCACGGGACACCATGAAACTGCTGACATCAACACTTTCCTTTGGGGTGTT 1114
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 938 GAGCGTCGTCTCACTGGACACCATGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTT 997
Query 1115 GCGAACCGTGGTGCATCGATCCGAGTAGGACGTGACACCGAGAAAGAAGGGAAGGGATAC 1174
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 998 GCGAACCGTGGAGCATCGATCCGTGTAGGACGTGACACCGAGAAAGAAGGGAAAGGATAC 1057
Query 1175 TTTGAGGATAGGAGGCCAGCTTCAAACATGGACCCTTACGTTGTTACTTCCATGATTGCA 1234
|||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 1058 TTTGAGGACAGGAGGCCAGCTTCGAACATGGACCCTTACATTGTCACTTCCATGATTGCA 1117
Query 1235 GAGACTACACTCCTCTGGAACCCTTGA 1261
||||| ||| |||||||||| ||||||
Sbjct 1118 GAGACCACAATCCTCTGGAATCCTTGA 1144
Score = 326 bits (176), Expect = 3e-88
Identities = 239/270 (89%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 162 CCATGAGTCTTCTTGCAGATCTTGTTAACCTTGACATCTCAGACAACAGTGA-AAAGATC 220
||||||||||| || ||||||| | |||||| || ||||||||| || ||| ||| |||
Sbjct 72 CCATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGACATCACTGACAAA-ATC 130
Query 221 ATCGCTGAATACATATGGGTTGGTGGTTCTGGTATGGACATGAGAAGCAAAGCCAGGACT 280
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 131 ATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGATATGAGAAGCAAAGCCAGGACT 190
Query 281 CTCCCTGGACCTGTGACCGATCCATCAAAACTTCCAAAGTGGAACTATGATGGTTCAAGC 340
|| |||||||| ||||| || || || | || |||||||||||||||||||||||||||
Sbjct 191 CTACCTGGACCAGTGACTGACCCTTCTCAGCTACCAAAGTGGAACTATGATGGTTCAAGC 250
Query 341 ACTGGTCAAGCTCCTGGTCAAGACAGTGAAGTGATCTTATACCCTCAAGCAATTTTCAAA 400
|||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||
Sbjct 251 ACTGGTCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAGCCATATTCAAG 310
Query 401 GATCCATTCCGTAGAGGCAACAACATCCTT 430
||||| ||||||||||| |||||||| |||
Sbjct 311 GATCCTTTCCGTAGAGGAAACAACATTCTT 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5