BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66240.1
Length=515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475728 jgi|Araly1|475728|fgenesh2_kg.2__858__AT1G66240.1 726 0.0
> Ahg475728 jgi|Araly1|475728|fgenesh2_kg.2__858__AT1G66240.1
Length=502
Score = 726 bits (393), Expect = 0.0
Identities = 468/504 (93%), Gaps = 6/504 (1%)
Strand=Plus/Plus
Query 10 TTAAAGACTTGTTCC-AAGCCGTATCCTATCAAAACACTGCAA--GTCTCTCTCTCTTTC 66
||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 2 TTAAAGACTTGTTCCAAAGCCGTATCCTAACAAAAAACTGCAACTCTCTCTCTCTCTTTC 61
Query 67 AAGCCTTGTCGGTGGTTGAATCGAAAGCTATGTCTCAGACCGTTGTTCTCAGAGTGGCCA 126
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 62 AAGCCTTGTCTGTAGTTGAATCGAAAGCTATGTCTCAGACCGTTGTTCTCAGAGTGGAAA 121
Query 127 TGACATGTGAGGGATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAGGCGTGG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGACATGTGAGGGATGTGTTGGAGCTGTGAAAAGAGTTCTTGGGAAAATGGAAGGCGTGG 181
Query 187 AGTCATTTGACGTTGATATAAAGGAGCAGAAAGTGACGGTGAAAGGCAACGTGCAGCCAG 246
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 182 AGTCATTTGATGTCGATATAAAGGAGCAGAAAGTGACGGTGAAAGGTAACGTGCAGCCAG 241
Query 247 ACGCAGTTTTACAGACCGTGACGAAAACCGGAAAGAAAACGGCTTTTTGGGAAGCTGAAG 306
|||| ||||||||||| ||| | |||||||||||||||||||||||||||||| | || |
Sbjct 242 ACGCGGTTTTACAGACGGTGTCAAAAACCGGAAAGAAAACGGCTTTTTGGGAAACCGAGG 301
Query 307 GTGAAACTGCTAAGGCTTAAGGAGAAGCAGATCATTTTATGTGATTCTCTGTTTTAATAA 366
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 302 GTGAAACTGCCAAGGCTTAAGGAGAAGCAGAGCATTTTATGTGATTCTCTGTTTTAATAA 361
Query 367 AATCTATGTGAAATCTTTTTATTTTCTTCTTCTGTTGCTTGTGACTTGTGGCTGAGTGTA 426
|||||||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 362 AATCTATGTGGAATCGTTTTATT--CTTCTTCTGTTGCTTGTGATTTGTGGCTGAGTGTA 419
Query 427 TTGGAACTATAGATGATACAACACACTTTTGAGTGAATAAATATGCACTGGGGCATTATC 486
| ||||||||||| |||||||||||||| |||||||||||||||||||| |||| || ||
Sbjct 420 T-GGAACTATAGAAGATACAACACACTTGTGAGTGAATAAATATGCACTCGGGCTTTGTC 478
Query 487 TGGTCTGATAAAGCAGGAGCCGAT 510
|||||||||||||| ||| ||||
Sbjct 479 GGGTCTGATAAAGCACGAGTCGAT 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18734394199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5