BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66260.1
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475731 jgi|Araly1|475731|fgenesh2_kg.2__861__AT1G66260.1 1639 0.0
Ahg493750 jgi|Araly1|493750|fgenesh2_kg.7__3183__AT5G37720.2 401 5e-111
> Ahg475731 jgi|Araly1|475731|fgenesh2_kg.2__861__AT1G66260.1
Length=1199
Score = 1639 bits (887), Expect = 0.0
Identities = 1120/1226 (91%), Gaps = 41/1226 (3%)
Strand=Plus/Plus
Query 62 aaaaaaaTCCCCAAAAGCTTCCTC-AAAACCCTAA-CACAGATCTCTCGATCTTCTCCGA 119
|||||||||||||||||||||||| |||||||||| | | ||||||||||||||||||||
Sbjct 1 AAAAAAATCCCCAAAAGCTTCCTCAAAAACCCTAATCGCCGATCTCTCGATCTTCTCCGA 60
Query 120 TCTGTC-T-TTTCTCCTAATCTGGT---TTAGTTTGATTTTATTGGATTGAAGATGTCAG 174
|||| | | |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 TCTGCCTTGTTTC-CCTAATCTGGTAAAGTAGTTTGATTTTATTGGATTGAAGATGTCAG 119
Query 175 ACGCTTTGAATATGACTCTTGATGAAATTGTGAAGAAGAGTAAGAGTGAAAGGTCTGCAG 234
||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 120 ACGCTTTGAATATGACTCTTGATGAAATTGTCAAGAAGAGTAAGTCTGCAAGGTCTGCAG 179
Query 235 CTGCAAGGTCTGGAGGTAAAGGAGTTTCCCGTAAGAGTGGACGTGGACGTGGTGGACCTA 294
||||||| |||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 180 CTGCAAGATCTGGAGGTAAAGGAGTTTCGCGCC-G--TGGACGTGGACGTGGTGGACCTA 236
Query 295 ATGGTGTTGTAGGAGGTGGAAGAGGAGGTGGACCTGTTCGTAGAGGTCCTCTTGCTGTTA 354
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATGGTGTTGTAGGAGCTGGAAGAGGAGGTGGACCTGTTCGTAGAGGTCCTCTTGCTGTTA 296
Query 355 ATACTCGGCCATCATCATCCTTCTCCATAAACAAGCTTGCCCGCAGGAAGAGGAGCTTGC 414
|| |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 ATGCTCGGCCATCTTCCTCCTTCTCGATAAACAAGCTTGCCCGCAGGAAGAGGAGCTTGC 356
Query 415 CATGGCAGAATCAGAATGATTTG-TATGAAGAAACCCTTAGAGCTGTTGGGGTATCAGGA 473
||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||| |||
Sbjct 357 CATGGCAGAATCAGAATGATTTGCT-TGAAGAAAGCCTGAGAGCTGTTGGGGTATCTGGA 415
Query 474 GTGGAAGTCGGAACCACAGTTTATATTACCAACCTTGATCAGGGAGTGACAAATGAAGAT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 416 GTGGAAGTCGGAACCACAGTTTATATTACCAACCTTGATCAGGGAGTGACAAACGAAGAT 475
Query 534 ATAAGGGAACTCTATGCTGAAATTGGAGAGCTGAAAAGATATGCAATTCACTATGACAAA 593
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATAAGGGAACTCTATGCTGAGATTGGAGAGCTGAAAAGATATGCAATTCACTATGACAAA 535
Query 594 AATGGGCGTCCAAGTGGATCGGCTGAAGTTGTGTATATGAGAAGAAGTGATGCAATT-CA 652
||||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||
Sbjct 536 AATGGGCGTCCAAGTGGCTCTGCTGAAGTTGTGTATATGAGAAGAAGTGATGCA-TTACA 594
Query 653 AGCTATGAGGAAATACAATAATGTACTTTTGGATGGAAGGCCTATGAAACTGGAGATTCT 712
|||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 595 AGCTATGAGGAAATACAACAATGTACTCTTGGATGGAAGGCCTATGAGACTAGAGATTCT 654
Query 713 GGGTGGAAATACTGAATCTGCTCCTGTCGCAGCTCGTGTTAATGTGACTGGATTGAATGG 772
|| |||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGGCGGAAGTGCTGAGGCTGCTCCTGTCGCAGCTCGTGTTAATGTGACTGGATTGAATGG 714
Query 773 AAGGATGAAGAGGAGTGTCTTCATTGGACAAGG-AGTTAGAGGTGGGAGAGTAGGAAGAG 831
|||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 715 AAGGATGAAGAGGAGTGTTTTCATTGGACAAGGCA-TTAGAGGTGGGAGAGTAGGAAGAG 773
Query 832 GAAGAGGTTCAGGTCCTTCTGGGAGACGCCTTCCACTCCAACAAAACCAACAAGGTGGTG 891
|||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| | ||
Sbjct 774 GAAGAGGTTCAGGTCCTTCTGGTAGACACCTTCCAATCCAACAAAACCAACAAGGAGTTG 833
Query 892 TGACAGCTGGTCGAGGCGGGTTCCGTGGTAGAGGCCGGGGTAATGGTGGTGGCAGAGGGA 951
||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 834 TGAGAGGTGGTCGAGGCGGGTTCCCTGGTAGAGGCCGAGGTAATGGTGGTGGCAGAGGGA 893
Query 952 ATAAAAGCGGTGGGCGAGGTGGAAAGAAGCCAGTGGAGAAGTCTGCTGCGGATCTCGACA 1011
|||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||||
Sbjct 894 ATAAAAGCGGC---CGAGGCGGAAAGAAGCCGGTGGAGAAGTCTGCTGCAGACCTGGACA 950
Query 1012 AAGATCTCGAAAGCTATCATGCTGAAGCTATGAACATCTCTTAAACAGAAGCAAGACTTC 1071
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 951 AAGATCTCGAAAGCTATCATGCTGAAGCTATGAACATCTCTTAAGCAGAAACAAGACTAC 1010
Query 1072 GCATCTTGTCATGTACTTTTGTGTTCTTT-ATTCTTAGTCTCTGACTAAATATGTGGCAA 1130
|| |||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 1011 GCTTCTTGTCATGTACTCTTGTGTTCTTTTATTCTTAGTCTCTGACTAAAT--GTGCCAA 1068
Query 1131 AGTCT--GGTTTGGTTTAATTACGTTTAGGATGGCTCTACTCTGCTTTTATTTTCCTCTT 1188
||||| |||||||||| ||| |||||||| |||||||||| ||||||| ||||||||||
Sbjct 1069 AGTCTCTGGTTTGGTTTGATTTCGTTTAGGGTGGCTCTACTTTGCTTTTGTTTTCCTCTT 1128
Query 1189 TTCTTGTTTCACACTTTCACAGTCACTTTTGGTTATTGAAGTTAAAAGAGATTTAGCT-G 1247
|| ||| | || ||| | || ||||||||||||| |||||||||||| | |
Sbjct 1129 TTGTTG---C----TT-CAC--T---TT--GGTTATTGAAGTTTAAAGAGATTTAGTTTG 1173
Query 1248 TAAATGAGAAAGCTGTTATTGTTAGT 1273
|||||||||||||| |||||||||||
Sbjct 1174 TAAATGAGAAAGCTTTTATTGTTAGT 1199
> Ahg493750 jgi|Araly1|493750|fgenesh2_kg.7__3183__AT5G37720.2
Length=950
Score = 401 bits (217), Expect = 5e-111
Identities = 595/769 (77%), Gaps = 60/769 (8%)
Strand=Plus/Plus
Query 309 GGTGGAAGAGGAGGTGGACCTGTTCGTAGAGGTCCTCTTGCTGTTAATACTCGGCCATCA 368
||||||||||||| |||||||| ||| ||||||||||||||||| ||| ||| ||| ||
Sbjct 216 GGTGGAAGAGGAGCTGGACCTGCTCGAAGAGGTCCTCTTGCTGTGAATGCTC-GCC--CA 272
Query 369 TCATCCTTCTCCATAAACAAGCTTGCCCGCAGGAAGAGGAGCTTGCCATGGCAGAATCAG 428
||||| |||||||| ||||||| || ||| ||| |||||||||||||||| || ||
Sbjct 273 TCATCTTTCTCCATTAACAAGCCTGTCCGTAGGGTCAGGAGCTTGCCATGGC--AA--AG 328
Query 429 AATGATTTGTATGAAGAAACCCTT-AGAGCTGTTGGGGTATCAGGAGTGGAAGTCGGAAC 487
|| ||||| ||||| | ||| ||||||| ||||||||||||||| ||||| |||||
Sbjct 329 --TGGTTTGTTTGAAG-ATGGCTTAAGAGCTGCTGGGGTATCAGGAGTTGAAGTTGGAAC 385
Query 488 CACAGTTTATATTACCAACCTTGATCAGGGAGTGACAAATGAAGATATAAGGGAACTCTA 547
|| | | || |||| || || || ||||| ||||||||||||||||||||||||||||
Sbjct 386 CAGACTCCATGTTACAAATCTGGACCAGGGTGTGACAAATGAAGATATAAGGGAACTCTT 445
Query 548 -TGCTGAAATTGGAGAGCT-GAAAAGATATGCAATTCACTATGACAAAAATGGGCGTCCA 605
| |||| ||||| ||| | || | ||||| ||||| |||||||||||||||||||||
Sbjct 446 CT-CTGAGATTGGGGAGGTAGAGC-GTTATGCGATTCATTATGACAAAAATGGGCGTCCA 503
Query 606 AGTGG-ATCGGCTGAAGTTGTGTATATGAGAAGAAGTGATGCAATTCAAGCTATGAGGAA 664
||||| | | |||||||| |||||| ||||||||||||||| |||||||| ||| |||
Sbjct 504 AGTGGCA-CAGCTGAAGTGGTGTATCCAAGAAGAAGTGATGCATTTCAAGCTCTGAAGAA 562
Query 665 ATACAATAATGTACTT-TTGGATGGAAGGCCTATGAAACTGGAGATTCTGGGTGG-AA-A 721
||| || |||||| || |||||||||||||| |||| ||| |||||| ||||||| || |
Sbjct 563 ATATAACAATGTA-TTATTGGATGGAAGGCCAATGAGACTTGAGATTTTGGGTGGCAACA 621
Query 722 -TACTGAATCTGCTCCTGTCGCAGCTCGTGTTAATGTGACTGG-ATTG-----AATGGAA 774
| | || |||||| | | | |||||| ||||||| || | || || ||||
Sbjct 622 ATTCCGAG---GCTCCTTTATCTGGTCGTGTGAATGTGAATGTCACTGGTCTCAACGGAA 678
Query 775 GGATGAAGAGGAGTGTC-TTCATTGGACAAGGAGTTAGAGGTGGGAGAGTAGGAAGAGGA 833
|| ||||||||| ||| || || |||| ||||||| ||||||| | | | | |
Sbjct 679 GGCTGAAGAGGACTGTTGTT-ATC---CAAG---TTAGAGGAGGGAGAG--G-A-G-G-A 725
Query 834 AGAGGTTCAGGTCCTTCTGGGAGACGCCTTCCACTCCAA--CAAAACCAACAAGGTGGTG 891
|||||| ||| |||| || || || | || ||||| || ||||| || || || |
Sbjct 726 AGAGGTCCAGCTCCTACTATCAGTCGTCG-CCT-TCCAATTCATAACCAGCAGGGAGG-G 782
Query 892 -TGACAGCTGGTCGAGGCGGGTTCCGTGGTAGAGGCCGGGGTAATGGTGGTGGCAGAGGG 950
||| || || |||||||||| ||||||||||| || ||| ||||| ||| | ||
Sbjct 783 ATGAGAGGGGGAAGAGGCGGGTTTCGTGGTAGAGGGCGTGGT---GGTGGCGGCCGTGGT 839
Query 951 AATAAAAGCGGTGGGCGAGG---TGGAAAGAAGCCAGTGGAGAAGTCTGCTGCGGATCTC 1007
| | ||||| |||| |||||||||||||||||| ||||| ||||| |||||
Sbjct 840 CGTG---GTGGTGGAAGAGGAAATGGAAAGAAGCCAGTGGAAAAGTCAGCTGCTGATCTT 896
Query 1008 GACAAAGATCTCGAAAGCTATCATGCTGAAGCTATGAACATCTCTTAAA 1056
||||| ||||| || |||||||| ||||| |||||||||| ||||||||
Sbjct 897 GACAAGGATCTTGAGAGCTATCACGCTGATGCTATGAACACCTCTTAAA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48987948345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5