BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66390.1
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925797 jgi|Araly1|925797|scaffold_201358.1 1160 0.0
Ahg925796 jgi|Araly1|925796|scaffold_201357.1 833 0.0
Ahg474823 jgi|Araly1|474823|fgenesh2_kg.1__4777__AT1G56650.1 815 0.0
Ahg475739 jgi|Araly1|475739|fgenesh2_kg.2__869__AT1G66370.1 723 0.0
Ahg925795 jgi|Araly1|925795|scaffold_201356.1 405 3e-112
Ahg338851 jgi|Araly1|338851|fgenesh1_pg.C_scaffold_2000950 399 1e-110
> Ahg925797 jgi|Araly1|925797|scaffold_201358.1
Length=788
Score = 1160 bits (628), Expect = 0.0
Identities = 737/790 (93%), Gaps = 6/790 (1%)
Strand=Plus/Plus
Query 78 TTA-ATTTTTCTTTGGTCCATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGAC 136
||| |||| |||||| |||||||| |||||||| |||||||| || ||||||||||||||
Sbjct 3 TTATATTTATCTTTGCTCCATGGAAGGTTCGTCGAAAGGGTTAAGAAAAGGTGCATGGAC 62
Query 137 TGCTGAAGAAGATAGTCTCTTGAGGCTATGTATTGATAAGTATGGAGAAGGCAAATGGCA 196
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 63 TGCTGAAGAAGATAGTCTCTTGAGGCAATGTATTGATAAGTATGGAGAAGGCAAATGGCA 122
Query 197 TCAAGTTCCTTTGAGAGCTGGGCTAAATCGATGCAGAAAGAGTTGTAGACTAAGATGGTT 256
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 123 CCAAGTTCCTTTGAGAGCTGGGCTAAACCGGTGCAGAAAGAGTTGTAGACTAAGATGGTT 182
Query 257 GAACTATTTGAAGCCAAGTATCAAGAGAGGAAGACTTAGCAATGATGAAGTTGATCTTCT 316
|||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 183 AAACTATTTAAAGCCAAGTATCAAGAGGGGAAGATTTAGCTCTGATGAAGTTGATCTTCT 242
Query 317 TCTTCGCCTTCATAAGCTTCTAGGAAATAGGTGGTCCTTGATTGCTGGTCGATTGCCTGG 376
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 243 TCTTCGCCTTCATAAGCTTCTCGGAAATAGGTGGTCCCTGATTGCTGGTCGATTGCCTGG 302
Query 377 TCGGACCGCTAATGATGTCAAAAATTACTGGAACACCCATCTGAGTAAAAAACATGAGTC 436
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 303 TCGGACTGCTAATGATGTCAAAAATTACTGGAACACCCATCTAAGTAAGAAACATGA-AC 361
Query 437 TTCGTGTTGTAAGTCTaaaatgaaaaagaaaaaCATTATTTCCCCTCCTACAACACCGGT 496
| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 362 --CATGTTGTAAGACTAAAATGAAAAAGAAAAACATCATTTCCCCTCCTACAACACCGGT 419
Query 497 CCAAAAAATCGGTGTTTTTAAGCCTCGACCTCGATCCTTCTCTGTTAACAATGGTTGCAG 556
||||||||||| |||||||||||||||||||||||||||||| || |||||||| || ||
Sbjct 420 CCAAAAAATCGATGTTTTTAAGCCTCGACCTCGATCCTTCTCCGTAAACAATGGCTGTAG 479
Query 557 CCATCTCAATGGTCTGCCAGAAGTTGATTTAATTCCTTCATGCCTTGGACTCAAGAAAAA 616
|||||||| |||||| ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 480 CCATCTCAGTGGTCTACCAGAAGTTGATTTAATTCCTTCCTGCCTTGGACTCAACAACAA 539
Query 617 TAATGTTTGTGAAAATAGTATCACATGTAACAAAGATGATGAGAAAGATGATTTTGTGAA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAATGTTTGTGAAAATAGTATCACATGTAACAAAGATGATGAGAAAGATGATTTTGTGAA 599
Query 677 TAATCTAATGAATGGAGATAATATGTGGTTGGAGAATTTACTGGGGGAAAACCAAGAAGC 736
|||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||
Sbjct 600 TAATCTAATGAATGGAGATAATATGTGGTTGGAGAATTTACTAGAGGAGAGCCAAGAAGC 659
Query 737 TGATGCGATTGTTCCTGAA-GCGACGACAGCTGAACATGGGGCCACTTTGGCGTTTGACG 795
|||||||| ||||| ||| || |||||| ||||| | |||||||||||||||||||||
Sbjct 660 AGATGCGATAGTTCC-GAAAGCAACGACAACTGAAGAGGGGGCCACTTTGGCGTTTGACC 718
Query 796 TTGAGCAACTTTGGAGTCTGTTTGATGGAGAGACTGTTGAACTTGATTAGTGTTTCTCAC 855
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 TTGAGCAACTTTGGAGTCTGTTTGATGGAGAGACTGTGGAACTTGATTAGTGTTTCTCAC 778
Query 856 CGTTTGTTTA 865
||||||||||
Sbjct 779 CGTTTGTTTA 788
> Ahg925796 jgi|Araly1|925796|scaffold_201357.1
Length=789
Score = 833 bits (451), Expect = 0.0
Identities = 679/787 (86%), Gaps = 23/787 (3%)
Strand=Plus/Plus
Query 88 TTTGGTCCATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAG 147
|||| |||||||||| | | ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 15 TTTGTTCCATGGAGGCTACTTCCAATGGGTTGACGAAAGGTGCATGGACTGCTGAAGAAG 74
Query 148 ATAGTCTCTTGAGGCTATGTATTGATAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTT 207
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 75 ATAGTCTCTTGAGGAAATGTATTGATAAGTATGGAGAAGGCAAATGGCACCAAGTTCCTT 134
Query 208 TGAGAGCTGGGCTAAATCGATGCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGA 267
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 135 TAAGAGCTGGGCTAAATCGATGCAGGAAGAGTTGTAGACTAAGATGGTTAAACTATTTGA 194
Query 268 AGCCAAGTATCAAGAGAGGAAGACTTAGCAATGATGAAGTTGATCTTCTTCTTCGCCTTC 327
||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||| |
Sbjct 195 AGCCAAGTATCAATAGAGGAAAATTTAGCACTGATGAAGTTGATCTTCTTCTTCGCCTCC 254
Query 328 ATAAGCTTCTAGGAAATAGGTGGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACCGCTA 387
||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
Sbjct 255 ATAAGCTTCTAGGAAATAGATGGTCCTTGATTGCTGGTCGATTGCCTGATCGTACCGCAA 314
Query 388 ATGATGTCAAAAATTACTGGAACACCCATCTGAGTAAAAAACATGAGTCTTCGTGTTGTA 447
||||||| || |||||||||||||||||| |||||| | ||||| ||| | |||||
Sbjct 315 ATGATGTTAAGAATTACTGGAACACCCATTTGAGTAGGAGGCATGAA-CTTT-T-TTGTA 371
Query 448 AGT-CTaaaatgaaaaagaaaaaCATTATTTCCCCTCCTACAACACCGGTCCAAAAAATC 506
|| | |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 372 -GTTCCAAAATGAAAACGAAAAACATTACTTCCCCTCCTACAACACCTGTCCAAAAAATC 430
Query 507 GGTGTTTTTAAGCCTCGACCTCGATCCTTCTCTGTTAACAATGGTTGCAGCCATCTCAAT 566
| ||||| ||||||||||||||||||||||| ||||| || | || ||||||||||||
Sbjct 431 GAAGTTTTAAAGCCTCGACCTCGATCCTTCTCCGTTAAAAACGCATGTAGCCATCTCAAT 490
Query 567 GG-TCTGCCAGAAGTTGAT-TTAATTCCTTCATGC-CTTGGACTCAAGAAAAATAATGTT 623
|| | | ||| |||||||| ||| ||||| ||||| || |||||||| || ||| |||||
Sbjct 491 GGCTTT-CCAAAAGTTGATGTTA-TTCCTCCATGCTCT-GGACTCAATAACAATTATGTT 547
Query 624 TGTGAAAATAGTATCACATGTAACAAAGATGATGA-GAAAGATGATTTTGTGAATAA--- 679
||||||| |||||||| |||| | ||||||| || ||| |||| | |||| ||||
Sbjct 548 TGTGAAAGTAGTATCATATGTGGCGAAGATGA-GAAGAATTATGAGTCTGTGTATAAAAA 606
Query 680 TCTAATGAATGGAGATAATATGTGGTTGGAGAATTTACTGGGGGAAAACCAAGAAGCTGA 739
||||||| || ||| |||||||||||| ||| |||||| | | | |||||| || ||
Sbjct 607 TCTAATGGATAAAGACAATATGTGGTTGAAGAGTTTACTAGAG-AG--CCAAGAGGCAGA 663
Query 740 TGCGATTGT-TCCTGAAGCGACGACAGCTGAACATGGGGCCACTTTGGCGTTTGACGTTG 798
||| | || ||| ||||| |||||| | ||| | ||||||||||||| ||||| ||||
Sbjct 664 TGC-ACTGGGTCCAGAAGCAACGACAACAGAAAACGGGGCCACTTTGGAATTTGATGTTG 722
Query 799 AGCAACTTTGGAGTCT-GTTTGATGGAGAGACTGTTGAACTTGATTAGTGTTTCTCACCG 857
| |||||||||| || |||||||||||||||||||||||||||||||||||||| || |
Sbjct 723 AACAACTTTGGAA-CTTGTTTGATGGAGAGACTGTTGAACTTGATTAGTGTTTCTGACTG 781
Query 858 TTTGTTT 864
|||||||
Sbjct 782 TTTGTTT 788
> Ahg474823 jgi|Araly1|474823|fgenesh2_kg.1__4777__AT1G56650.1
Length=903
Score = 815 bits (441), Expect = 0.0
Identities = 709/836 (85%), Gaps = 27/836 (3%)
Strand=Plus/Plus
Query 86 TCTTTGGTCCATGGAGGGTTCGTCCAAAGGGTTGA-GGAAAGGTGCATGGACTGCTGAAG 144
|||||| |||||||||||||||||||||||| | | | |||||||| |||||||||||||
Sbjct 41 TCTTTGTTCCATGGAGGGTTCGTCCAAAGGGCT-ACGAAAAGGTGCTTGGACTGCTGAAG 99
Query 145 AAGATAGTCTCTTGAGGCTA-TGTATTGATAAGTATGGAGAAGGCAAATGGCATCAAGTT 203
|||||||||| ||||| | | || ||| |||||| ||| |||||||||||||| ||||||
Sbjct 100 AAGATAGTCTTTTGAGAC-AGTGCATTAATAAGTTTGGTGAAGGCAAATGGCACCAAGTT 158
Query 204 CCTTTGAGAGCTGGGCTAAATCGATGCA-GAAAGAGTTGTAGACTAAGATGGTTGAACTA 262
||| | |||||||||||||| || |||| |||| ||||||||||||||||||||||||||
Sbjct 159 CCTGTAAGAGCTGGGCTAAACCGGTGCAGGAAA-AGTTGTAGACTAAGATGGTTGAACTA 217
Query 263 TTTGAAGCCAAGTATCAAGAGAGGAAGACTTAGCAATGATGAAGTTGATCTTCTTCTTCG 322
|||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 218 TTTGAAGCCAAGTATCAAGAGAGGAAAACTTAGCTCTGATGAAGTCGATCTTCTTCTTCG 277
Query 323 CCTTCATAAGCTTCTAGGAAATAGGTGGTCCTTGATTGCTGGTCGATTGCCTGGTCGGAC 382
|||||||| ||||||||||||||||||||| || |||||||| |||| |||||||||||
Sbjct 278 CCTTCATAGGCTTCTAGGAAATAGGTGGTCTTTAATTGCTGGAAGATTACCTGGTCGGAC 337
Query 383 CGCTAATGATGTCAAAAATTACTGGAACACCCATCTGAGTAAAAAACATGAGTCTTCGTG 442
||| ||||||||||| |||||||||||||| ||||||||||| |||||||| | | ||
Sbjct 338 CGCAAATGATGTCAAGAATTACTGGAACACTCATCTGAGTAAGAAACATGAA-C--CATG 394
Query 443 TTGTAAG-TCTaaaatgaaaaagaaaaaCATTATTTCCCCT-CCTACAACACCGGTC-CA 499
||||||| || || ||||||||||||||||||| ||| | ||||||||||| | | |
Sbjct 395 TTGTAAGATC-AAGATGAAAAAGAAAAACATTACG-CCCATTCCTACAACACCAG-CACT 451
Query 500 AAAAATCGGTGTTTTTAAGCCTCGACCTCGATCCTTCTCTGTTAACAATGGTTGCAGCCA 559
||||||| ||||| |||||||||||||||||||||| | |||||||| | ||||| |||
Sbjct 452 AAAAATCAATGTTTATAAGCCTCGACCTCGATCCTTCGCAGTTAACAACGATTGCAACCA 511
Query 560 TCTCAATGGTCTGCCAGAAGTTGAT-TTAATTCCTTCATGCCTTGGACTCAAGAAAAATA 618
||||||||| | |||||||||||| ||||| ||| |||||||||||||||| || ||||
Sbjct 512 TCTCAATGGCCCGCCAGAAGTTGACGTTAAT-CCTCCATGCCTTGGACTCAACAACAATA 570
Query 619 ATGTTTGTGAAAATAGTATCACATGTAACAAAGATGATGA-GAAAGATGATTTTGTGAAT 677
|||||||||| |||||||||| || ||||||||||| || ||||||| | ||||||||
Sbjct 571 ATGTTTGTGACAATAGTATCAAATACAACAAAGATGA-GAAGAAAGATCAGCTTGTGAAT 629
Query 678 AATCTAATGAATGGAGATAATATGTGGTTGGAGAATTTACTGGGGGAAAACCAAGAAGCT 737
||| | || |||||| ||||||||||||||||| ||| || | ||| | |||||| |
Sbjct 630 AATTTGATTCATGGAGGTAATATGTGGTTGGAGAGTTTCCTTGAGGAGAGCCAAGAGGAA 689
Query 738 GATG-CGATTG-TTCCTGAAGCGACGACAGCTGAACATGGGGCCACTTTGGCGTTTGACG 795
||| | ||| |||| |||||||||||| | ||| | |||| ||| ||||| |||||||
Sbjct 690 GATATC--TTGGTTCCAGAAGCGACGACAACAGAAAAAGGGGACACCTTGGCATTTGACG 747
Query 796 TTGAGCAACTTTGGAGTCTGTTT-GATGGAGAGACTGTTGAACTTGATTAGTGTTTCTCA 854
|||| |||||||||||||| ||| |||||||||||||| || ||||||||||||| |
Sbjct 748 TTGATCAACTTTGGAGTCT-TTTCGATGGAGAGACTGTAAAATTTGATTAGTGTTTGGAA 806
Query 855 CCGTTTGTTTAAGATTGTGGGTGGCTTTTCTTTCGTATTTTAGTAATGTAT-TTTT 909
| | ||||| | ||||| |||| ||| ||||||||||| | || ||| | ||||
Sbjct 807 CA-TATGTTTGCGTTTGTGTGTGGGTTTGCTTTCGTATTTAATTAGTGTGTGTTTT 861
> Ahg475739 jgi|Araly1|475739|fgenesh2_kg.2__869__AT1G66370.1
Length=750
Score = 723 bits (391), Expect = 0.0
Identities = 630/745 (85%), Gaps = 18/745 (2%)
Strand=Plus/Plus
Query 110 CAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTCTTGAGGCTA-TGTA 168
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||| | || |
Sbjct 15 CAAAGGTTTGAGAAAAGGTACATGGACTGCTGAAGAAGATAGTCTCTTGAGGC-AGTGCA 73
Query 169 TTGATAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTTTGAGAGCTGGGCTAAATCGAT 228
||||||||||||||||| |||||||||| || |||||||| ||||||||||||||||| |
Sbjct 74 TTGATAAGTATGGAGAAAGCAAATGGCACCAGGTTCCTTTAAGAGCTGGGCTAAATCGGT 133
Query 229 GCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATCAAGAGAGGAA 288
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 134 GCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATTAAGAGAGGAA 193
Query 289 GACTTAGCAATGATGAAGTTGATCTTCTTCTTCGCCTTCATAAGCTTCTAGGAAATAGGT 348
| || || ||||||||| || |||||||||||||| || ||||||||||||||||| |
Sbjct 194 AATTTTGCTCTGATGAAGTAGACCTTCTTCTTCGCCTGCACAAGCTTCTAGGAAATAGAT 253
Query 349 GGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACCGCTAATGATGTCAAAAATTACTGGA 408
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||
Sbjct 254 GGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACTGCTAATGATATCAAGAATTATTGGA 313
Query 409 ACACCCATCTGAGTAAAAAACATGA-GT-CTTCGTGTTGTAAGTCTaaaatgaaaaagaa 466
|||||||| ||||||| || ||||| | || ||| ||||| | || |||| ||| |
Sbjct 314 ACACCCATTTGAGTAAGAAGCATGATGAACTA--TGTCGTAAGACGAAGATGATAAACAG 371
Query 467 aaaCATTATTTCCCCTCCTACAACACCGGTCCAAAAAATCGGTGTTTTTAAGCCTCGACC 526
|||||||| ||||| |||||| || ||| ||||||||||| |||||| |||||||||||
Sbjct 372 AAACATTACTTCCCATCCTACTACTTCGGCCCAAAAAATCGATGTTTTAAAGCCTCGACC 431
Query 527 TCGATCCTTCTCTGTTAACAATGGTTGCAGCCATCTCAATGGTC-TGCCAGAAGTTGATT 585
|||||||||||| | ||| ||| |||||| | ||||||||| || ||||| |||||||
Sbjct 432 TCGATCCTTCTCCGATAAAAATAGTTGCAACGATCTCAATG-TCCTGCCAAAAGTTGACG 490
Query 586 TAATTCCTTCATGCCTTGGACTCAAGAAAAATAATGTTTGTGAAAATAGTATCACATGTA 645
|| |||||||||| |||||||||| || |||||||||||||||| |||||||||||||
Sbjct 491 TAGTTCCTTCATGGTTTGGACTCAACAACAATAATGTTTGTGAAAGGAGTATCACATGTA 550
Query 646 ACAAAGATGATG-AGAAAGATGATTTTG-TGAATAATCTAATGAATGGAGATAATA-TGT 702
|||||||||| | |||||||| | || | |||||||||||| |||||||||||| | |
Sbjct 551 ACAAAGATGA-GCAGAAAGATAAGCTTACT-AATAATCTAATGGATGGAGATAATACT-T 607
Query 703 GGTTGGAGAATTTACTGGGGGAAAACCAAGAAGCTGATGCGATT-GTTCCTGAAGCG-AC 760
||| ||||| |||||||| ||| | |||||||| ||| ||| | ||| |||| | ||
Sbjct 608 GGTGGGAGAGTTTACTGGAGGAGAGTCAAGAAGCAGATTT-ATTCGGTCCAGAAG-GTAC 665
Query 761 GACAGCTGAACATGGGGCCACTTTGGCGTTTGACGTTGAGCAACTTTGGAGTCTGTTTGA 820
|| | | ||| | || | || | ||||||||||||| | |||||||| || ||||| |
Sbjct 666 GATAACAGAAAAAGGAGAGACCTCGGCGTTTGACGTTTCGAAACTTTGGGGTTTGTTTCA 725
Query 821 TGGAGAGACTGTTGAACTTGATTAG 845
|| |||||| || ||||| |||||
Sbjct 726 TGAAGAGACGGTGGAACTAAATTAG 750
> Ahg925795 jgi|Araly1|925795|scaffold_201356.1
Length=467
Score = 405 bits (219), Expect = 3e-112
Identities = 301/340 (89%), Gaps = 8/340 (2%)
Strand=Plus/Plus
Query 81 ATTTTTCTTTGGTCCATGGAGGGTTCGTCCAAA-GGGTTGAGGAAAGGTGCATGGACTGC 139
|||| ||||||| ||||||| |||| | |||| |||||||| |||||| ||||||||||
Sbjct 6 ATTTATCTTTGGGACATGGAGAGTTCCT-CAAATGGGTTGAGAAAAGGTACATGGACTGC 64
Query 140 TGAAGAAGATAGTCTCTTGAGGCTATGTATTGATAAGTATGGAGAAGGCAAATGGCATCA 199
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 65 TGAAGAAGATATTCTCTTGAGGAAATGTATTGATAAGTATGGAGAAGGCAAATGGCACCA 124
Query 200 AGTTCCTTTGAGAGCTGGGCTAAATCGATGCAGAAAGAGTTGTAGACTAAGATGGTTGAA 259
|||||||| ||||||||| |||| |||||| | ||| ||||||||||||||||||||||
Sbjct 125 GGTTCCTTTAAGAGCTGGGTTAAACCGATGCGGGAAGGGTTGTAGACTAAGATGGTTGAA 184
Query 260 CTATTTGAAGCCAAGTATCAAGAGAGGAAGACTT-AGCA-ATGATGAAGTTGATCTTCTT 317
||| ||| ||||||||||||| ||||||| |||| ||| | || ||||||||||||||
Sbjct 185 CTACTTGCAGCCAAGTATCAAAAGAGGAA-ACTTTAGCTCA-GACGAAGTTGATCTTCTC 242
Query 318 CTTCGCCTTCATAAGCTTCTAGGAAATAGGTGGTC-CTTGATTGCTGGTCGATTGCCTGG 376
|||||||||| ||||||||||||||| |||||||| || |||||| ||| ||||||||||
Sbjct 243 CTTCGCCTTCGTAAGCTTCTAGGAAACAGGTGGTCACT-GATTGCCGGTAGATTGCCTGG 301
Query 377 TCGGACCGCTAATGATGTCAAAAATTACTGGAACACCCAT 416
|||||| ||||||||| |||| ||||||||||||||||||
Sbjct 302 TCGGACTGCTAATGATATCAAGAATTACTGGAACACCCAT 341
> Ahg338851 jgi|Araly1|338851|fgenesh1_pg.C_scaffold_2000950
Length=768
Score = 399 bits (216), Expect = 1e-110
Identities = 370/443 (84%), Gaps = 15/443 (3%)
Strand=Plus/Plus
Query 96 ATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 155
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGGTTCGTCGAAAGGGTTAAGAAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 60
Query 156 TTGAGGCTATGTATTGATAAGTATGGAGAAGGCAAATGGCATCAAG-TTCCTTTGAGAGC 214
||||||| |||||||||||| |||||||||||||||||| | ||| ||||||| |||||
Sbjct 61 TTGAGGCAATGTATTGATAAATATGGAGAAGGCAAATGGAA-CAAACTTCCTTTAAGAGC 119
Query 215 TGGGCTAAATCGATGCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAG 274
|||| |||| |||||||| ||||| |||||| ||||||||||||||| || ||||||||
Sbjct 120 TGGGTTAAACCGATGCAGTAAGAGCTGTAGAGAAAGATGGTTGAACTACTTAAAGCCAAG 179
Query 275 TATCAAGAGAGGAAGACTTAGCAATGATGAAGTTGATCTTCTTCTTCGCCTTCATAAGCT 334
|||||| ||||||| | || || || |||||||||||||| |||||||||||||||||
Sbjct 180 TATCAAAAGAGGAAAATTTGGCTCGGACGAAGTTGATCTTCTCCTTCGCCTTCATAAGCT 239
Query 335 TCTAGGAAATAGGTGGTC-CTTGATTGCTGGTCGATTGCCTGGTCGGACCGCTAATGATG 393
| |||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||
Sbjct 240 TTTAGGAAATAGGTGGTCACTC-ATTGCTGGTAGATTGCCTGGTCGAACCGCTAATGATG 298
Query 394 TCAAAAATTACTGGAACACCCATCT-GAGTAAAAAACATGAGTCTTCGTGTTGTA--AGT 450
|||| |||||||||| ||| ||| | | |||| || || || | ||||||||| ||
Sbjct 299 TCAAGAATTACTGGACCACTCATTTCG-GTAAGAAGCAAGAA-C--CGTGTTGTACTAG- 353
Query 451 CTaaaatgaa-aaagaaaaaCATTATTTCCCCTCCTACAACACCGGTCCAAAAAATCGGT 509
| |||| || ||||| | | |||| || | || | |||| | ||||||| | ||
Sbjct 354 C-AAAAC-AAGAAAGAGATATATTACTTGTTCAGCTGCCTCACCAGCCCAAAAACTTAGT 411
Query 510 GTTTTTAAGCCTCGACCTCGATC 532
||| | ||||||||||||| |||
Sbjct 412 GTTATAAAGCCTCGACCTCAATC 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36636123237
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5