BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66540.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475761 jgi|Araly1|475761|fgenesh2_kg.2__891__AT1G66540.1 2124 0.0
Ahg475755 jgi|Araly1|475755|fgenesh2_kg.2__885__AT1G66540.1 2074 0.0
Ahg490885 jgi|Araly1|490885|fgenesh2_kg.7__318__AT4G37370.1 887 0.0
Ahg490886 jgi|Araly1|490886|fgenesh2_kg.7__319__AT4G37340.1 660 0.0
Ahg353102 jgi|Araly1|353102|fgenesh1_pg.C_scaffold_7000275 385 7e-106
Ahg925690 jgi|Araly1|925690|scaffold_201251.1 381 9e-105
> Ahg475761 jgi|Araly1|475761|fgenesh2_kg.2__891__AT1G66540.1
Length=1572
Score = 2124 bits (1150), Expect = 0.0
Identities = 1454/1598 (91%), Gaps = 32/1598 (2%)
Strand=Plus/Plus
Query 1 AAGAAAATCAAATCAACAACAATGGAAGACGAAACTCAAACCCTAATTCTCATCACAATC 60
||||||||||||||| ||||||||||||| ||| |||||||||||| | || ||||||||
Sbjct 1 AAGAAAATCAAATCAGCAACAATGGAAGAAGAATCTCAAACCCTAA-T-TC-TCACAATC 57
Query 61 CTAATCCTAACCCTCATCACTCTCACATTCCTCATCAAAAAACTCAAACCAAAACCAAAC 120
|||||||| | || | || || |||||||||||||||||||||||||||||||
Sbjct 58 CTAATCCT-A-----AT--C-CT--CA-TCCTCATCAAAAAACTCAAACCAAAACCAAAT 105
Query 121 CTCCCACCATCTCCACCGTTCTCACTTCCAATCATCGGCCACCTCCGCCTTCTCAAACCA 180
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 CTTCCTCCATCTCCACCGTTCTCACTTCCAATCATCGGCCACCTCCGCCTTCTCAAACCA 165
Query 181 CCGCTCCACCGTCTTTTCCTCACCATCTCTAAATCACTAAACGATTCTCCGATCTTCTCC 240
|||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 166 CCGCTCCACCGTATCTTCCTCACCATCTCTAAATCCCTAAACAATTCTCCGATCTTCTCC 225
Query 241 CTTCGTCTAGGAAACAAACTCGTTTTCGTAGTCTCTTCACACTCAATCGTCGAAGAATGC 300
|| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 226 CTCCGTCTCGGAAACAAACTCGTTTTCGTCGTCTCTTCAAACTCAATCGTCGAAGAATGC 285
Query 301 TTCACGAAAAACGACGTCGTTCTCGCGAACCGTCCAAAGTCAATTGCTTCTTAACATATC 360
||||| ||||||||||||||||||||||| || |||||||||||||||||| |||| |||
Sbjct 286 TTCACCAAAAACGACGTCGTTCTCGCGAATCGACCAAAGTCAATTGCTTCTAAACACATC 345
Query 361 TCGTACAATTACGCATCTATGGTATCAGCTCCGTATAGTGAGCATTGGAGGAATCTCCGA 420
|||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 346 TCGTACAATTACTCATCTATGGTCTCAGCTCCGTATAGTGAACATTGGAGAAATCTCCGC 405
Query 421 CGTATTGGCGCCGTCGAGATTTTCTCCAATCATCGGCTTAATAGCTTTTACACTATCCGC 480
||||| |||||||||||||||||||||| ||| |||||||||||||||| | ||||||||
Sbjct 406 CGTATCGGCGCCGTCGAGATTTTCTCCAGTCACCGGCTTAATAGCTTTTCCTCTATCCGC 465
Query 481 CGCGACGAGATCCGGCGACTTATCGCTCGTCTCTCTCGGTCTCCAAACGCTTCACTCGAA 540
||||||||| |||||||||||| | ||||||||||| | || | ||| |||||||
Sbjct 466 CGCGACGAGGCCCGGCGACTTATAGTTCGTCTCTCTCAG-----AA-CTCTTTACTCGAA 519
Query 541 TTTGCAAAGGTTGAGATGAATTCAATGTTATCTAACTTAGCATTCAACAACATTATTAGA 600
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 520 TTTGCAAAGGTTGAGATGAATTCAGTGTTATCTAATTTAGCATTCAACAACATTATTAGA 579
Query 601 ATGGTGACGGGAAAATGTTACTATGGAGATGGTGCAGAGGATGATCCTGAGGCTAAACGT 660
|||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 580 ATGGTGACTGGAAAATGTTACTATGGAGATGGTGCAGAGGATGATGCGGAGGCTAAACGC 639
Query 661 GTGCGGCAGCTTATCGCAGAGGCGATGAGTTGTTTTGGTGCAGGACATGCGGCTGATCAT 720
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 640 GTGCGGCAGCTTATCGCGGAGGCGATGAGTTGTTTTGGTGCCGGACACGCGGCTGATCAT 699
Query 721 TTACCGATGTTGCGATGGATTACAGATTTCGAGAGGCGGGTAAAGAAGATTGCTGCTAGG 780
|||||| | ||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 700 TTACCGGTCTTGAGATGGATTACAGGTTTCGAGAGGCGGGTAAAGAAGATTGCTGGTAGG 759
Query 781 CTTGATGAGTTTTTCCAAAGATTGGTTGATGAGAAACGTGTGGCAAAGGAGAAGAAGGAG 840
||||||||||| ||||| ||||||||||||||||||| | ||||||||||||| | ||
Sbjct 760 CTTGATGAGTTCTTCCAGGGATTGGTTGATGAGAAACGAGCGGCAAAGGAGAAG--G-AG 816
Query 841 AACACGATGATTGATCACTTGCTTTCTTTGCAAGTATCCCAACCTGAGTACTACACAGAC 900
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 817 AATACGATGATTGATCACTTGCTTTCTTTGCAAGAATCCCAACCTGAGTACTATACAGAC 876
Query 901 CATACCATTAAAGGAACCATGCTTTCTCTTATACTTGCGGGGACTGATACATCAGCGGTA 960
|| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 877 CACACCATTAAAGGAACTATGCTCTCTCTTATACTTGCGGGGACAGATACATCAGCGGTA 936
Query 961 ACATTGGAATGGGCATTATCAAGCCTTTTGAACAATCCTGAAGTACTAAAAAAGGTGAGA 1020
||||||||||||||||| || ||||| |||||| |||| |||||||||||||||| ||||
Sbjct 937 ACATTGGAATGGGCATTGTCGAGCCTGTTGAACCATCCCGAAGTACTAAAAAAGGCGAGA 996
Query 1021 GATGAAATCGACAATCAAATTGGCTTGGACAGGCTTTTGGAAGAATCAGACATTCCAAAC 1080
||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||
Sbjct 997 GATGAAATCGACAATAAAATTGGCTTAGACAGGCTTTTGGAAGAATCAGACGTTCCAAAT 1056
Query 1081 CTTCCTTATCTTCAGAACATTGTCTCTGAAACGTTGCGCTTGTATCCCGCTGGGCCCTTG 1140
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1057 CTTCCTTATCTTCAGAACATCGTCTCTGAAACGTTGCGCTTGTACCCCGCAGGGCCCTTG 1116
Query 1141 TTAGTCCCACACATCTCATCAGAAGATTGTAAAGTAGGGGGTTACGATATGCCGTGTGGC 1200
| ||||| ||| || ||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct 1117 TCCGTCCCGCACGTCGCATCAGAAGTTTGTAAAGTAGGAGGTTACGATATGCCGCGTGGC 1176
Query 1201 ACGATGTTATTGGTGAACGTCTGGGCTATACATAGAGATCCTAGGCTATGGGATGATCCC 1260
|||||||| |||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 1177 ACGATGTTGTTGGTGAATGTGTGGGCTATACATAGAGATCCTAAGCTATGGGATGATCCG 1236
Query 1261 GCGAGTTTCAAGCCAGAGAGGTTTGAGAAAGAAGGAGAGACGCATAAGTTATT-GACGTT 1319
||||||||||||||||||||||| |||||||||||||||||||||||| || | | ||||
Sbjct 1237 GCGAGTTTCAAGCCAGAGAGGTTCGAGAAAGAAGGAGAGACGCATAAGCTACTAG-CGTT 1295
Query 1320 CGGGTTAGGAAGAAGAGCGTGTCCTGGTTCCGGACTGGCTCGACGGCTAGTGAGCTTGAG 1379
|||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||
Sbjct 1296 CGGGTTAGGAAGAAGAGCTTGTCCTGGGTCCGGACTGGCTCAACGGCTAGTGAGTTTGAG 1355
Query 1380 TCTCGGGTCTTTGATTCAATGTTTTGAATGGGAGAGGATTGGAGAAGAGGAGGTGGATAT 1439
||||||||| ||||| |||||||||||||||||||||| ||| ||||| ||||| |||||
Sbjct 1356 TCTCGGGTCATTGATACAATGTTTTGAATGGGAGAGGAATGGCGAAGAAGAGGTTGATAT 1415
Query 1440 GACTGAAGGTGGTGGACTCACAATGCCTAGAGCTATTCCGTTGGTAGCCATGTGCAGAGC 1499
|||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 1416 GACTGAAGGTGGAGGACTCACTATGCCTAAAGCTAATCCGTTGGTAGCCATGTGCAGAGC 1475
Query 1500 ACGTGCCTTTGTTGGAAAAATTCC-ACATGAGTCTG---G-TTGATTTTGTATACTTTTG 1554
||||||||||||||| ||||| || ||| ||||| | | |||||||||||||||||||
Sbjct 1476 ACGTGCCTTTGTTGGTAAAAT-CCTACACGAGTCCGCTTGATTGATTTTGTATACTTTTG 1534
Query 1555 TAAATTCTATTGCTAGCTATATACATGTGTTTAGATAT 1592
||||| ||| |||||||| |||||||||||||| ||||
Sbjct 1535 TAAATGCTAGTGCTAGCTCTATACATGTGTTTACATAT 1572
> Ahg475755 jgi|Araly1|475755|fgenesh2_kg.2__885__AT1G66540.1
Length=1524
Score = 2074 bits (1123), Expect = 0.0
Identities = 1405/1541 (91%), Gaps = 19/1541 (1%)
Strand=Plus/Plus
Query 1 AAGAAAATCAAATCAACAACAATGGAAGACGAAACTCAAACCCTAATTCTCATCACAATC 60
|||||||||| |||||||||||||||||| ||| |||||||||||| | || ||||||||
Sbjct 1 AAGAAAATCATATCAACAACAATGGAAGAAGAATCTCAAACCCTAA-T-TC-TCACAATC 57
Query 61 CTAATCCTAACCCTCATCACTCTCACATTCCTCATCAAAAAACTCAAACCAAAACCAAAC 120
|||||||||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 58 CTAATCCTAA---TCCTCACTCTCACATACCTCATCAAAAAACTCAAACCAAAACCAAAT 114
Query 121 CTCCCACCATCTCCACCGTTCTCACTTCCAATCATCGGCCACCTCCGCCTTCTCAAACCA 180
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 115 CTTCCTCCATCTCCACCGTTCTCACTTCCAATCATTGGCCACCTCCGCCTTCTCAAACCA 174
Query 181 CCGCTCCACCGTC-TTTTCCTCACCATCTCTAAATCACTAAACGATTCTCCGATCTTCTC 239
||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 175 CCGCTCCACCG-CGTTTTCCTCACCATCTCTAAATCCCTAAACAATTCTCCGATCTTCTC 233
Query 240 CCTTCGTCTAGGAAACAAACTCGTTTTCGTAGTCTCTTCACACTCAATCGTCGAAGAATG 299
||| ||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||
Sbjct 234 CCTCCGTCTCGGAAACAAACTCGTTTTCGTCGTCTCTTCAAACCCAATCGTCGAAGAATG 293
Query 300 CTTCACGAAAAACGACGTCGTTCTCGCGAACCGTCCAAAGTCAATTGCTTCTTAACATAT 359
|||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||
Sbjct 294 CTTCACGAAAAACGACGTCGTTCTCGCGAATCGTCCAAAATCAATTGCTTCTAAACATAT 353
Query 360 CTCGTACAATTACGCATCTATGGTATCAGCTCCGTATAGTGAGCATTGGAGGAATCTCCG 419
||||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 354 CTCGTACAATTACTCATCTATGGTCTCAGCTCCGTATAGTGAACATTGGAGAAATCTCCG 413
Query 420 ACGTATTGGCGCCGTCGAGATTTTCTCCAATCATCGGCTTAATAGCTTTTACACTATCCG 479
||||| ||||| |||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 414 CCGTATCGGCGCTGTCGAGATTTTCTCCAATCACCGGCTTAATAGCTTTTCCTCTATCCG 473
Query 480 CCGCGACGAGATCCGGCGACTTATCGCTCGTCTCTCTCGGTCTCCAAACGCTTCACTCGA 539
||| |||||| |||||||||||| | ||||||||||| | || | ||||||| ||
Sbjct 474 CCGGGACGAGGCCCGGCGACTTATAGTTCGTCTCTCTCAG-----AA-CTCTTCACTGGA 527
Query 540 ATTTGCAAAGGTTGAGATGAATTCAATGTTATCTAACTTAGCATTCAACAACATTATTAG 599
||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 528 ATTCACAAAGGTTGAGATGAATTCAATGTTATCTAATTTAGCATTCAATAACATTATTAG 587
Query 600 AATGGTGACGGGAAAATGTTACTATGGAGATGGTGCAGAGGATGATCCTGAGGCTAAACG 659
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 588 AATGGTGACTGGAAAATGTTACTATGGAGATGGTGCAGAGGATGATGCGGAGGCTAAACG 647
Query 660 TGTGCGGCAGCTTATCGCAGAGGCGATGAGTTGTTTTGGTGCAGGACATGCGGCTGATCA 719
||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 648 CGTGCGGCAGCTTATCGCGGAGGCGATGAGTTGTTTTGGTGCCGGACACGCGGCTGATCA 707
Query 720 TTTACCGATGTTGCGATGGATTACAGATTTCGAGAGGCGGGTAAAGAAGATTGCTGCTAG 779
||||||| | ||| |||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 708 TTTACCGGTCTTGAGATGGATTACAGGTTTCGAGAGGCGGGTAAAGAAGATTTCTGGTAG 767
Query 780 GCTTGATGAGTTTTTCCAAAGATTGGTTGATGAGAAACGTGTGGCAAAGGAGAAGAAGGA 839
|||||||||||| ||||| ||||||||||||||||||| | ||||||||| || | |||
Sbjct 768 GCTTGATGAGTTCTTCCAGGGATTGGTTGATGAGAAACGAGCGGCAAAGGA-AA-A-GGA 824
Query 840 GAACACGATGATTGATCACTTGCTTTCTTTGCAAGTATCCCAACCTGAGTACTACACAGA 899
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 825 GAATACGATGATTGATCACTTGCTTTCTTTGCAAGAATCCCAACCTGAGTACTACACAGA 884
Query 900 CCATACCATTAAAGGAACCATGCTTTCTCTTATACTTGCGGGGACTGATACATCAGCGGT 959
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 885 CCACACTATTAAAGGAACTATGCTTTCTCTTATACTTGCGGGGACAGATACATCAGCGGT 944
Query 960 AACATTGGAATGGGCATTATCAAGCCTTTTGAACAATCCTGAAGTACTAAAAAAGGTGAG 1019
|||||||||||||||||| | ||||| |||||| |||| |||||||||||||||| |||
Sbjct 945 AACATTGGAATGGGCATTGGCGAGCCTGTTGAACCATCCCGAAGTACTAAAAAAGGCGAG 1004
Query 1020 AGATGAAATCGACAATCAAATTGGCTTGGACAGGCTTTTGGAAGAATCAGACATTCCAAA 1079
|||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 1005 AGATGAAATCGACAATAAAATTGGCTTAGACGGGCTTTTGGAAGAATCAGACGTTCCAAA 1064
Query 1080 CCTTCCTTATCTTCAGAACATTGTCTCTGAAACGTTGCGCTTGTATCCCGCTGGGCCCTT 1139
||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 1065 TCTTCCTTATCTTCAGAACATTGTCTCTGAAATGTTGCGCTTGTACCCCGCAGGGCCCTT 1124
Query 1140 GTTAGTCCCACACATCTCATCAGAAGATTGTAAAGTAGGGGGTTACGATATGCCGTGTGG 1199
|| ||||| ||| || |||||||||| |||||||| || ||||||||||||||| ||||
Sbjct 1125 GTCCGTCCCGCACGTCGCATCAGAAGACTGTAAAGTCGGAGGTTACGATATGCCGCGTGG 1184
Query 1200 CACGATGTTATTGGTGAACGTCTGGGCTATACATAGAGATCCTAGGCTATGGGATGATCC 1259
||||||||| |||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 1185 CACGATGTTGTTGGTGAATGTGTGGGCTATACATAGAGATCCTAAGCTATGGGATGATCC 1244
Query 1260 CGCGAGTTTCAAGCCAGAGAGGTTTGAGAAAGAAGGAGAGACGCATAAGTTATTGACGTT 1319
| |||||||||||||||||||||| |||||||||||| |||| |||||| || || ||||
Sbjct 1245 CACGAGTTTCAAGCCAGAGAGGTTCGAGAAAGAAGGAAAGACTCATAAGCTACTGGCGTT 1304
Query 1320 CGGGTTAGGAAGAAGAGCGTGTCCTGGTTCCGGACTGGCTCGACGGCTAGTGAGCTTGAG 1379
|||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 1305 CGGGTTAGGAAGAAGAGCGTGTCCAGGGTCCGGACTGGCTCAACGGCTAGTGAGCTTGAG 1364
Query 1380 TCTCGGGTCTTTGATTCAATGTTTTGAATGGGAGAGGATTGGAGAAGAGGAGGTGGATAT 1439
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1365 TCTCGGGTCTTTGATTCAATGCTTTGAATGGGAGAGGATTGGAGAAGAAGAGGTGGATAT 1424
Query 1440 GACTGAAGGTGGTGGACTCACAATGCCTAGAGCTATTCCGTTGGTAGCCATGTGCAGAGC 1499
|||||||||||| |||||||| ||||||||| ||| || ||||||||||| ||||||||
Sbjct 1425 GACTGAAGGTGGAGGACTCACTATGCCTAGAACTAGACCTTTGGTAGCCATATGCAGAGC 1484
Query 1500 ACGTGCCTTTGTTGGAAAAATTCC-ACATGAGTCTGGTTGA 1539
||||||||||||||| ||||| | ||| ||||| | ||||
Sbjct 1485 ACGTGCCTTTGTTGGTAAAAT-CATACACGAGTCCGCTTGA 1524
> Ahg490885 jgi|Araly1|490885|fgenesh2_kg.7__318__AT4G37370.1
Length=1539
Score = 887 bits (480), Expect = 0.0
Identities = 1113/1415 (79%), Gaps = 58/1415 (4%)
Strand=Plus/Plus
Query 163 CTCCGCCTTCTCAAACCACCGCTCCACCGTC-TTTTCC--TCACCATCTCTAAATCACTA 219
||||| || |||||||||||| | | || | ||||| ||| | | ||| |||| |||
Sbjct 134 CTCCGTCTCCTCAAACCACCGATTTATCG-CACTTTCCTTTCA-C-TTTCTCAATCCCTA 190
Query 220 AACGATTCTCCGATCTTCTCCCTTCGTCTAGGAAACAAACTCGTTTTCGTAG-TCTCTTC 278
||| || |||||||||||||||| || || || ||| |||||||||||| | ||| ||
Sbjct 191 AACAATGCTCCGATCTTCTCCCTCCGACTCGGTAACCGACTCGTTTTCGT-GAACTCGTC 249
Query 279 ACACTCAATCGTCGAAGAATGCTTCACGAAAAACGACGTCGTTCTCGCGAACCGTCCAAA 338
||||| |||| ||| ||||| ||||| || ||||||||||| ||||| ||||| |||||
Sbjct 250 GCACTCGATCGCCGAGGAATGTTTCACCAAGAACGACGTCGTACTCGCAAACCGGCCAAA 309
Query 339 -GTCAATTGCT-TCTTAACATATCTCGTACAATTACGCATCTATGGTATCAGCTCCGTAT 396
|| | | || || |||| || ||||| ||||| || | ||| | ||||| | ||
Sbjct 310 CTTC-A-TCCTCGCTAAACACGTCGCGTACGATTACACAACCATGATCGCAGCTTCTTAC 367
Query 397 AGTGAGCATTGGAGGAATCTCCGACGTATTGGCGCCGTCGAGATTTTCTCCAATCATCGG 456
|||| || ||| | || ||||| || || ||| |||||||||| ||||||||||| |||
Sbjct 368 GGTGACCACTGGCGTAACCTCCGCCGCATCGGCTCCGTCGAGATATTCTCCAATCACCGG 427
Query 457 CTTAATAGCTTT-TACACTATCCGCCGCGACGAGATCCGGCGACTTATCG-CTCGTCTCT 514
||||| |||||| || || | || |||||||||||||||||| | | |||||| |
Sbjct 428 CTTAACAGCTTTCTA-TCTGTTCGTAAAGACGAGATCCGGCGACTTGT-GTTTCGTCTTT 485
Query 515 CTCGGTCTCCAAACGCTTCACTCGAATTTGCAAAGGTTGAGATGAATTCAATGTTATCTA 574
||||| ||| ||||| || |||| ||||| |||||||| || |||||||||
Sbjct 486 CTCGG------AACTTTTCACAAGAGTTTGTGAAGGTGGAGATGAAATCGATGTTATCTG 539
Query 575 ACTTAGCATTCAACAACATTATTAGAATGGTGACGGGAAAATGTTACTATGGAGATGGTG 634
||||| |||||||||||||||| ||||||||| | |||||| ||||||| ||||| ||||
Sbjct 540 ACTTAACATTCAACAACATTATAAGAATGGTGGCCGGAAAACGTTACTACGGAGACGGTG 599
Query 635 CAGAGGATGATCCTGAGGCTAAACGTGTGCGGCAGCTTATCGCAGAGGCGATGAG-TTGT 693
||||||||||| ||||||||||| || ||||||||||| || || | | | || ||||
Sbjct 600 TTGAGGATGATCCGGAGGCTAAACGAGTCCGGCAGCTTATTGCGGATGTGGT-AGCTTGT 658
Query 694 TTTGGTGCAGGACATGCGGCTGATCATTTACCGATGTTGC-GATGGAT-TACAGATTTCG 751
|||||| ||| | || | |||| |||||||||| |||| | | | | | |||||| ||
Sbjct 659 GCTGGTGCCGGAAACGCTGTTGATTATTTACCGATTTTGCGGTTAG-TCT-CAGATTACG 716
Query 752 AGAGGCGGGTAAAGAAGATT-GCTGCTAGGCTTGATGAGTTTTTCCAAAGATTGGTTGAT 810
||| ||||| |||||| || || | |||||| || ||||| || ||| ||||||||||
Sbjct 717 AGACACGGGTTAAGAAG-TTGGCGGGTAGGCTCGACGAGTTCTTGCAAGGATTGGTTGAC 775
Query 811 GAGAAACGTGTGGCAAAGGAGAAGAAGGAGAACACGATGATTGATCACTTGCTTTCTTTG 870
|||||||| | || |||||| | ||||| ||||||||||| |||||||||||| || |
Sbjct 776 GAGAAACGAGAAGCTAAGGAG-A-AAGGA-AACACGATGATCGATCACTTGCTTACTCTC 832
Query 871 CAAGTATCCCAACCTGAGTACTACACAGACCATACCATTAAAGGAACCATGCTTTCTCTT 930
|||| ||||||||| || |||| ||| || | || ||| ||||||| ||||||| | ||
Sbjct 833 CAAGAATCCCAACCGGATTACTTCACTGATCGTATCATCAAAGGAAACATGCTTGGT-TT 891
Query 931 -ATACTTGCGGGGACTGATACATCAGCGGTAACATTGGAATGGGCATTATC-AAGCCTTT 988
||||| || ||||| || ||||||||||| || || ||||||||||| || || ||| |
Sbjct 892 GATACTAGCAGGGACCGACACATCAGCGGTTACGTTAGAATGGGCATTGTCGAA-CCTGT 950
Query 989 TGAACAATCCTGAAGTACTAAAAAAGGTGAGAGATGAAATCGACAATCAA-ATTGGCTTG 1047
||||| |||| || ||| | || |||| ||||||||||||||| | || || || ||
Sbjct 951 TGAACCATCCGGAGGTATTGAACAAGGCGAGAGATGAAATCGA-TAGAAAGATAGGTTTA 1009
Query 1048 GACAGGCTTTTGGAAGAATCAGACATTC-CAAACCTTCCTTATCTTCAGAACATTGTCTC 1106
||||||||| |||| |||||||||| || |||| || || ||||| || |||||||| ||
Sbjct 1010 GACAGGCTTATGGACGAATCAGACA-TCTCAAATCTGCCATATCTCCAAAACATTGTATC 1068
Query 1107 TGAAACGTTGCG-CTTGTATCCCGCTGG-GCCCTTG-TTAGTCCCACACATCT-CATCAG 1162
|||||||||||| ||| ||||| || || ||| || || | || ||| | | | || |
Sbjct 1069 TGAAACGTTGCGCCTT-TATCCTGC-GGTTCCCATGCTT-CTTCCTCACGT-TGCCTCGG 1124
Query 1163 AAGATTGTAAAGTAGGGGGTTACGATATGCCGTGTGGCACGATGTTATTGGTGAACGTC- 1221
| ||||||||||| | || || ||||||||| ||||||||||| ||||| || | |
Sbjct 1125 AGGATTGTAAAGTTGCAGGATATGATATGCCGCGTGGCACGATGCTATTGACCAATG-CA 1183
Query 1222 TGGGCTATACATAGAGATCCTAGGCTATGGGATGATCCCGCGAGTTTCAAGCCAGAGAGG 1281
||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 1184 TGGGCTATACACAGAGATCCTCGGCTATGGGATGATCCAATGAGCTTCAAGCCAGAGAGG 1243
Query 1282 TTTGAGAAAGAAGGAGAGACGCATAAGTTATTGACGTTCGGGTTAGGAAGAAGAGCGTGT 1341
|||||||||||||||||| | || ||| || || |||| |||||||||||||| ||||||
Sbjct 1244 TTTGAGAAAGAAGGAGAGGCTCAGAAGCTAATGCCGTTTGGGTTAGGAAGAAGGGCGTGT 1303
Query 1342 CCTGGTTCCGGACTGGCTCGA-CGGCTAGTGAGCTTGAGTCTCGGGTCTTTGATTCAATG 1400
|||||||| |||||||||| | |||||| | | | ||| | | || || |||||||| ||
Sbjct 1304 CCTGGTTCTGGACTGGCTC-ATCGGCTAATAAACCTGACTATTGGATCATTGATTCAGTG 1362
Query 1401 TTTTGAATGGGAGAGGATTGGAGAAGAGGAGGTGGATATGACTGAAGGTGGTGGACTCAC 1460
||| |||||| ||||||||||||| || || |||||||||| |||||| ||||| ||
Sbjct 1363 TTTGGAATGGAAGAGGATTGGAGATGAAGAAGTGGATATGAGTGAAGGCAAAGGACTTAC 1422
Query 1461 AATGCCTAGAGCTATTCCGT-TGGTAGCCATGTGCAGAGCACGTGCCTTTGTTGGAAAAA 1519
|||||||| ||| || || | | | ||||||||||||||||||||||| ||||| |||
Sbjct 1423 AATGCCTAAAGCCATGCC-TCTCGAAGCCATGTGCAGAGCACGTGCCTCTGTTGTTAAAC 1481
Query 1520 T-TCCACATGAGTCTGGTTGATTTTGTATACTTTT 1553
| | || | ||| | | |||| ||| || ||||||
Sbjct 1482 TCTTCA-ACGAGGCCGCTTGACTTT-TAGACTTTT 1514
> Ahg490886 jgi|Araly1|490886|fgenesh2_kg.7__319__AT4G37340.1
Length=1336
Score = 660 bits (357), Expect = 0.0
Identities = 664/809 (82%), Gaps = 33/809 (4%)
Strand=Plus/Plus
Query 765 GAAGATTGCTGCTAGGCTTGATGAGTTTTTCCAAAGATTGGTTGATGAGAAACGTG-TGG 823
|||||| |||| ||||||||||||||| || ||| ||||||| ||||||||||| | ||
Sbjct 537 GAAGATCGCTGGTAGGCTTGATGAGTTCTTGCAAGGATTGGTCGATGAGAAACGAGAAGG 596
Query 824 CAAAGGAGAAGA---AGGAGAACACGATGATTGATCACTTGCTTTC-TTTGCAAGTATCC 879
|||||||||| ||||||||| ||| | |||||||||| ||| | ||||| | |
Sbjct 597 -GAAGGAGAAGAGGGAGGAGAACATAATGGTCGATCACTTGC-TTCGTCAGCAAGAAACA 654
Query 880 CAA-CCTGAGTACTACACAGACCATACCATTAAAGGAACCATGCTTTCTCTTATACTT-G 937
||| || ||||||||||| ||| | | || ||||| | |||||| ||||||||| || |
Sbjct 655 CAATCC-GAGTACTACACGGACAACATTATCAAAGGGATCATGCTCTCTCTTATA-TTGG 712
Query 938 CGGGGACTGATACATCAGCGGTAACATTGGAATGGGCATTATCAAGCCTT-TTGAACAAT 996
||||||| ||||||||||| ||||||||||||||| |||| || || ||| |||||| ||
Sbjct 713 CGGGGACAGATACATCAGCAGTAACATTGGAATGGACATTGTCGAG-CTTGTTGAACCAT 771
Query 997 CCTGAAG-TACTAAAAAAGGTGAGAGATGAAATCGACAATCAAATTGGCTTGGACAGGCT 1055
|| ||| |||||| |||| |||||| |||||||||||| || | ||||| |||||
Sbjct 772 CC-AAAGATACTAAGCAAGGCGAGAGAAGAAATCGACAATGAAGTAGGCTT---TAGGCT 827
Query 1056 TTTGGAAGAATCAGACATTC-CAAACCTTCCTTATCTTCAGAACATTGTCTCTGAAACGT 1114
| |||||||||||||| || || ||||||||||||||||||||||| | ||| |||
Sbjct 828 TGTGGAAGAATCAGAC-CTCTCACGTCTTCCTTATCTTCAGAACATTGTGTATGAGTCGT 886
Query 1115 TGCGCTTGTAT-CCC-GCTGGGCCCTTGTTAGTCCCACACATCTCATCAGAAGATTGTAA 1172
|||| || ||| ||| || | |||||||| ||||| ||| | |||||||||| |||||
Sbjct 887 TGCG-TT-TATACCCTGCAAGTCCCTTGTTGGTCCCTCACGTGGCATCAGAAGACTGTAA 944
Query 1173 AGTAGGGGGTTACGATATGCCGTGTGGCACGATGTTATTG-GTGAACGTCTGGGCTATAC 1231
||||||||||||||||||||| |||| |||||||||||| | || | |||||||||||
Sbjct 945 AGTAGGGGGTTACGATATGCCACGTGGAACGATGTTATTGACT-AATGCCTGGGCTATAC 1003
Query 1232 ATAGAGATCCTAGGCTATGGGATGATCCCGCGAGTTTCAAGCCAGAGAGGTTTGAGAAAG 1291
| || ||||||| | ||||||||||||| ||| ||| || ||||||||||| |||||||
Sbjct 1004 ACAGGGATCCTAAGATATGGGATGATCCAACGAATTTTAAACCAGAGAGGTTCGAGAAAG 1063
Query 1292 AAGGAGAGACGCATAAGTTATTGACGTTCGGGTTAGGAAGAAGAGCGTGTCCTGGTTCCG 1351
|||| ||| | |||||| || || ||||||| |||||||||| || |||||||| ||||
Sbjct 1064 AAGGGGAGGCTCATAAGCTAATGGGGTTCGGGCTAGGAAGAAGGGCATGTCCTGGGTCCG 1123
Query 1352 GACTGGCTCGACGGCTAGTGAGCTTGAGTCTCGGGTCTTTGATTCAATGTTTTGAATGGG 1411
| || |||| | |||||| |||||||| | ||||||||||||||||||||||||| ||||
Sbjct 1124 GTCTAGCTCAATGGCTAGCGAGCTTGACTATCGGGTCTTTGATTCAATGTTTTGAGTGGG 1183
Query 1412 AGAGGATTGGAGAAGAGGAGGTGGATATGACTGAAGGT---GGTGGACTCACAATGCCTA 1468
||||| |||| ||||| ||||||||||||| ||||||| || ||| ||| |||||| |
Sbjct 1184 AGAGGGTTGGTGAAGAAGAGGTGGATATGAGTGAAGGTGGCGGAGGAGTCATAATGCCCA 1243
Query 1469 GAGCTATTCCGTTGGTAGCCATGTGCAGAGCACGTGCCTTTGTTGGAAAAATTC-CACAT 1527
|||||| |||||||||||||||||||||||||||||||||||||| ||||| | || |
Sbjct 1244 AAGCTATACCGTTGGTAGCCATGTGCAGAGCACGTGCCTTTGTTGGTAAAATACTCA-AC 1302
Query 1528 GAGTCTGGTTGATTTTGTATACTTTTGTA 1556
||||| | |||| ||| | |||||||||
Sbjct 1303 GAGTCCGCTTGAGTTT--AGACTTTTGTA 1329
> Ahg353102 jgi|Araly1|353102|fgenesh1_pg.C_scaffold_7000275
Length=609
Score = 385 bits (208), Expect = 7e-106
Identities = 312/362 (86%), Gaps = 8/362 (2%)
Strand=Plus/Plus
Query 1163 AAGATTGTAAAGTAGGGGGTTACGATATGCCGTGTGGCACGATGTTATTG-GTGAACGTC 1221
||||||||||||| | ||| ||||||||||| |||||||||| ||||| | || | |
Sbjct 233 AAGATTGTAAAGTTGCGGGATACGATATGCCACATGGCACGATGCTATTGACT-AATG-C 290
Query 1222 -TGGGCTATACATAGAGATCCTAGGCTATGGGATGATCCCGCGAGTTTCAAGCCAGAGAG 1280
|||||||||||||| |||||| |||||| ||||||||| | || |||| ||||||||
Sbjct 291 ATGGGCTATACATAGGGATCCTCGGCTATTGGATGATCCAACTAGCCTCAATCCAGAGAG 350
Query 1281 GTTTGAGAAAGAAGGAGAGACGCATAAG-TTATTGACGTTCGGGTTAGGAAGAAGAGCGT 1339
||| ||||||| ||||||| | |||||| ||| || |||||||| |||| ||| | || |
Sbjct 351 GTTCGAGAAAGGAGGAGAGGCTCATAAGCTTA-TGCCGTTCGGGCTAGGTAGACGGGCAT 409
Query 1340 GTCCTGGTTCCGGACTGGCTCGA-CGGCTAGTGAGCTTGAGTCTCGGGTCTTTGATTCAA 1398
||||||| ||||| |||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 410 GTCCTGGGTCCGGTTTGGCTC-AGCGGCTAGTGACCTTGAGTCTCGGGTCTTTGATTCAA 468
Query 1399 TGTTTTGAATGGGAGAGGATTGGAGAAGAGGAGGTGGATATGACTGAAGGTGGTGGACTC 1458
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 469 TGTTTTGAGTGGGAGAGGATTGGAGAAGAAGAGGTTGATATGACTGAAGGTGGAGGACTC 528
Query 1459 ACAATGCCTAGAGCTATTCCGTTGGTAGCCATGTGCAGAGCACGTGCCTTTGTTGGAAAA 1518
|| ||||||| || ||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 529 ACTATGCCTAAAGGTATACCGTTGGTAGCCATGTGCAGAGCACGTGCCTTCGTTGGTAAA 588
Query 1519 AT 1520
||
Sbjct 589 AT 590
Score = 113 bits (61), Expect = 3e-24
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 947 ATACATCAGCGGTAACATTGGAATGGGCATTATCAAGCCTT-TTGAACAATCCTGAAGTA 1005
||||||||||||||||||||||||||||||| |||||| || ||||||||||| || |||
Sbjct 107 ATACATCAGCGGTAACATTGGAATGGGCATTGTCAAGC-TTGTTGAACAATCCAGAGGTA 165
Query 1006 CTAAAAAAGGTGAGAGATGAAATCGA 1031
|| ||||||| ||||||||| |||||
Sbjct 166 CTGAAAAAGGCGAGAGATGAGATCGA 191
> Ahg925690 jgi|Araly1|925690|scaffold_201251.1
Length=299
Score = 381 bits (206), Expect = 9e-105
Identities = 231/243 (95%), Gaps = 1/243 (0%)
Strand=Plus/Plus
Query 1316 CGTTCGGGTTAGGAAGAAGAGCGTGTCCTGGTTCCGGACTGGCTCGACGGCTAGTGAGCT 1375
|||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 55 CGTTCGGGTTAGGAAGAAGAGCTTGTCCTGGGTCCGGACTGGCTCAACGGCTAGTGAGCT 114
Query 1376 TGAGTCTCGGGTCTTTGATTCAATGTTTTGAATGGGAGAGGATTGGAGAAGAGGAGGTGG 1435
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 115 TGAGTCTCGGGTCTTTGATTCAATGCTTTGAATGGGAGAGGATTGGAGAAGAAGAGGTGG 174
Query 1436 ATATGACTGAAGGTGGTGGACTCACAATGCCTAGAGCTATTCCGTTGGTAGCCATGTGCA 1495
|||||||||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 175 ATATGACTGAAGGTGGAGGACTCACAATGCCTAGAGCTAGACCTTTGGTAGCCATGTGCC 234
Query 1496 GAGCACGTGCCTTTGTTGGAAAAATTCCACATGAGTCTGGTTGATTTTGTATACTTTTGT 1555
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 235 GAGCACGTGCCTTTGTTGGAAAAATTCTACATGAGTCTGGTTGATTTTGTA-ACTTTTGT 293
Query 1556 AAA 1558
|||
Sbjct 294 AAA 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5