BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66750.1 Length=1345 Score E Sequences producing significant alignments: (Bits) Value Ahg475772 jgi|Araly1|475772|fgenesh2_kg.2__902__AT1G66750.1 1670 0.0 Ahg356893 jgi|Araly1|356893|fgenesh1_pg.C_scaffold_8000680 302 6e-81 Ahg939525 jgi|Araly1|939525|scaffold_600069.1 276 3e-73 > Ahg475772 jgi|Araly1|475772|fgenesh2_kg.2__902__AT1G66750.1 Length=1072 Score = 1670 bits (904), Expect = 0.0 Identities = 1017/1073 (95%), Gaps = 2/1073 (0%) Strand=Plus/Plus Query 49 AATCTAAACCCAATGTCGAAATCCGGCGATAATCAACCAGTTGATAGATACCTCCGCCGT 108 |||| ||||||||||||||||||| ||| || |||||||| ||| |||| ||||||||| Sbjct 1 AATCAAAACCCAATGTCGAAATCCAACGAAAACCAACCAGTGGATCGATATCTCCGCCGT 60 Query 109 CAAATCCTCGGAGAAGGAACATACGGTGTCGTTTACAAAGCCACCGACACAAAGACTGGG 168 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 CAAATCCTCGGAGAAGGAACATACGGTGTCGTTTACAAAGCCACAGACACAAAGACTGGA 120 Query 169 AAAACTGTAGCAGTGAAGAAGATAAGATTAGGAAACCAAAAGGAAGG-AGTAAATTTCAC 227 |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| Sbjct 121 AAAACTGTAGCAGTGAAGAAGATAAGATTAGGAAACGAAAAGGAAGGCA-TAAATTTCAC 179 Query 228 AGCTTTAAGAGAAATCAAGCTACTAAAAGAGCTGAATCATCCACATATCGTTGAACTCAT 287 |||||| ||||| || |||||| |||||||||||||||||||||| || ||||||||||| Sbjct 180 AGCTTTGAGAGAGATAAAGCTATTAAAAGAGCTGAATCATCCACACATTGTTGAACTCAT 239 Query 288 TGATGCTTTCCCTCACGATGGAAGTTTGCATCTAGTTTTTGAGTATATGCAAACAGATTT 347 ||||||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||| Sbjct 240 TGATGCTTTTCCTCACAATGGAAGTTTGCATTTAGTTTTTGAGTATATGCAAACGGATTT 299 Query 348 AGAAGCAGTGATTCGTGATCGTAATATCTTTTTATCTCCTGGTGATATTAAGTCTTATAT 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AGAAGCAGTGATTCGTGATCGTAATATCTTTTTATCTCCTGGTGATATTAAGTCTTATAT 359 Query 408 GTTGATGACTTTGAAGGGTTTAGCTTATTGTCATAAGAAATGGGTTCTTCACAGGGATAT 467 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 360 GTTGATGACTTTGAAGGGTTTAGGTTATTGTCATAAGAAATGGGTTCTTCACAGGGATAT 419 Query 468 GAAGCCGAATAATTTGTTGATTGGAGAGAATGGTTTGTTGAAGTTGGCTGATTTTGGTTT 527 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GAAGCCAAATAATTTGTTGATTGGAGAGAATGGTTTGTTGAAGTTGGCTGATTTTGGTTT 479 Query 528 GGCGAGGTTGTTTGGGAGTCCGAATCGGAGGTTTACTCATCAGGTATTTGCTACATGGTA 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGCGAGGTTGTTTGGGAGTCCGAATCGGAGGTTTACTCATCAGGTATTTGCTACATGGTA 539 Query 588 CAGAGCGCCTGAGTTACTGTTTGGGAGTCGACAGTATGGAGCAGGAGTTGATGTTTGGGC 647 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CAGAGCGCCTGAGTTGTTATTTGGGAGTCGACAGTATGGAGCAGGAGTTGATGTTTGGGC 599 Query 648 TGCAGGCTGTATTTTTGCTGAGTTACTACTTCGTAGACCATTTCTTCCGGGTTCTACTGA 707 |||||| ||||| ||||||||| || |||||||| |||||||||| |||||||||||||| Sbjct 600 TGCAGGTTGTATCTTTGCTGAGCTATTACTTCGTCGACCATTTCTACCGGGTTCTACTGA 659 Query 708 GATTGATCAACTTGGAAAGATCTTTCAAGCGTTTGGTACTCCAGTACCTTCCCAATGGTC 767 ||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||| Sbjct 660 GATTGATCAACTTGGAAAGATCTTTCAGGCTTTTGGAACTCCAGTACCTTCGCAATGGTC 719 Query 768 TGACATGATCTATCTCCCAGACTACATGGAATTCTCCTATACACCCGCTCCACCATTACG 827 ||| ||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||| Sbjct 720 TGATATGATCTATCTCCCAGACTACTTGGAGTTCTCTTATACACCTGCTCCACCATTACG 779 Query 828 TACCATTTTCCCTATGGCAAGTGATGACGCTTTGGATCTTCTAGCAAAAATGTTCATCTA 887 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 780 TACCATTTTCCCTATGGCAAGCGATGACGCTTTGGATCTTCTAGCAAAAATGTTCATCTA 839 Query 888 CGACCCACGTCAAAGGATCACAATACAACAAGCTTTAGACCACAGGTATTTCTCGTCTTC 947 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 840 CGACCCACGACAAAGGATCACAATACAGCAAGCTTTAGACCACAGGTATTTCTCGTCTTC 899 Query 948 TCCATCACCAACTGAGCCAGGGAAGCTTCAGATTCCAGCTTCCAAAGGAGACGCACTCGA 1007 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 900 TCCATCACCAACTGAGCCAGGGAAGCTTCAGATTCCGGCTTCAAAAGGAGACGCACTCGA 959 Query 1008 ACCAAAGGCCTCCGAGCAAAACCAACATGGAAATAGCCCAGCGGTACTGTCTCCTCCTGG 1067 ||||||||||||||||||||||||||| | ||||||||| || |||||||| |||||||| Sbjct 960 ACCAAAGGCCTCCGAGCAAAACCAACACGCAAATAGCCCGGCCGTACTGTCACCTCCTGG 1019 Query 1068 TAAAATGAGGAGAGTGATGGGTCCTGAAGGATTCACTTGAGAAGATGATGTTT 1120 ||||||||||||||| ||||||||||| |||||||||||||||||| |||||| Sbjct 1020 TAAAATGAGGAGAGTAATGGGTCCTGAGGGATTCACTTGAGAAGATAATGTTT 1072 > Ahg356893 jgi|Araly1|356893|fgenesh1_pg.C_scaffold_8000680 Length=483 Score = 302 bits (163), Expect = 6e-81 Identities = 186/197 (94%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 605 TGTTTGGGAGTCGACAGTATGGAGCAGGAGTTGATGTTTGGGCTGCAGGCTGTATTTTTG 664 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 140 TGTTTGGTAGTCGACAGTATGGAGCAGGAGTTGATGTCTGGGCTGCAGGCTGTATCTTTG 199 Query 665 CTGAGTTACTACTTCGTAGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTT-GGA 723 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 200 CTGAGCTATTACTTCGTAGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTTAGG- 258 Query 724 AAGATCTTTCAAGCGTTTGGTACTCCAGTACCTTCCCAATGGTCTGACATGATCTATCTC 783 |||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||| Sbjct 259 AAGATCTTTCAAGCCTTTGGAACTCCAGTACCTTCTCAATGGTATGACATGATCTATCTC 318 Query 784 CCAGACTACATGGAATT 800 ||||||||||||||||| Sbjct 319 CCAGACTACATGGAATT 335 > Ahg939525 jgi|Araly1|939525|scaffold_600069.1 Length=521 Score = 276 bits (149), Expect = 3e-73 Identities = 170/180 (94%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 622 TATGGAGCAGGAGTTGATGTTTGGGCTGCAGGCTGTATTTTTGCTGAGTTACTACTTCGT 681 |||||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||| Sbjct 175 TATGGAGCAGGAGTTGATGTCTGGGCTGCAGGCTGTATCTTTGCTGAGCTATTACTTCGT 234 Query 682 AGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTT-GGAAAGATCTTTCAAGCGTT 740 ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || Sbjct 235 AGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTTAGGAA-GATCTTTCAAGCCTT 293 Query 741 TGGTACTCCAGTACCTTCCCAATGGTCTGACATGATCTATCTCCCAGACTACATGGAATT 800 ||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 294 TGGAACTCCAGTACCTTCTCAATGGTATGACATGATCTATCTCCCAGACTACATGGAATT 353 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50322250440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5