BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66760.2 Length=1811 Score E Sequences producing significant alignments: (Bits) Value Ahg475774 jgi|Araly1|475774|fgenesh2_kg.2__904__AT1G66760.2 2540 0.0 Ahg944975 jgi|Araly1|944975|scaffold_701204.1 278 1e-73 > Ahg475774 jgi|Araly1|475774|fgenesh2_kg.2__904__AT1G66760.2 Length=1674 Score = 2540 bits (1375), Expect = 0.0 Identities = 1538/1618 (95%), Gaps = 6/1618 (0%) Strand=Plus/Plus Query 59 TTATATCAAAATCATAAAGCTAAATAAATACGACACAACTTCCAACATTTTCTCTAACCA 118 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 36 TTATATCAAAATCATAAAGCTAAATAAATACGACACAACTTCCCACATTTTCTCTCTCCA 95 Query 119 GAAAGaaaaaaaaaaTGAAGAAGAGTATCGAAACTCCGTTATTGTTGAACACCAAACAAT 178 ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 96 GAAAG--AAAAAAAATGAAGAAGAGTATCGAAACTCCATTACTGTTGAACACCAAACAAT 153 Query 179 CACAAGACGAAGATAAAGAAAAAATAAGATGGGAGAAGATGAAGAAAGTTGCTTCAATGG 238 ||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||| Sbjct 154 CACAAGAAGAAGAGAACGAAAAGCTAAGATGGGAGAAGATAAAGAAAGTTGCTTCAATGG 213 Query 239 CTGCTCCAATGGTCGCCGTGAACATGTCTCAATACCTTCTTCAAGCAACTTCTACAATGA 298 |||||||||||||||| |||||||||||||| | |||||||||||||||||| ||||||| Sbjct 214 CTGCTCCAATGGTCGCTGTGAACATGTCTCAGTTCCTTCTTCAAGCAACTTCAACAATGA 273 Query 299 TCGTCGGTCACCGGAGCGAACTCGCTCTCGCCGGAATCGCTCTAGGAAGCTCCTTTGCTA 358 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct 274 TCGTCGGTCACCGGAGTGAACTCGCTCTCGCCGGAATAGCTCTCGGAAGCTCCTTTGCTA 333 Query 359 ATGTTACCGGCTTTGGTGTTCTTTTTGGACTTTCAGGTTCATTGGAAACACTATGTGGTC 418 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 334 ATGTTACCGGCTTTGGTGTTCTTTTTGGACTTTCAGGTTCATTAGAAACTTTATGTGGTC 393 Query 419 AAGCATATGGAGCAAAACAATATCACAAGCTTGGATCTTACACTTTCACTTCAATAGTTT 478 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 394 AAGCATATGGAGCAAAACAATATCACAAGCTTGGTTCTTACACTTTCACTTCAATAGTTT 453 Query 479 TCCTTTTGATTATCTCTGTTCCGATTTCGATTCTTTGGATGTTCATGAACCAGATCTTGC 538 |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 454 TCCTCTTGATTATCTCTGTCCCGATTTCAATTCTTTGGATGTTCATGAACCAGATCTTGC 513 Query 539 TGTTGCTTCATCAAGATCCTCAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTGG 598 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 514 TTTTGCTTCATCAAGATCCTCAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTTG 573 Query 599 TACCAGCTTTATTCGGTTACTCTGTTCTCGAGTCGTTGGTTCGATATTTTCAGTCACAAA 658 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 574 TACCGGCTTTATTCGGTTACTCTGTTCTCGAGTCGTTGGTTCGATATTTTCAGTCACAAA 633 Query 659 GCTTGATTTATCCAATGGTCTTGAGCTCTCTAGCTGCTCTGTCTTTCCATGTTCCTCTCT 718 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 634 GCTTGATCTATCCAATGGTCTTGAGCTCTTTAGCTGCTCTGTCTTTCCATGTTCCTCTCT 693 Query 719 GTTGGCTAATGGTTCATAAATTTGATTTTGGAGCCAAAGGAGCGGCTGCGTCTATCGGTA 778 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 694 GTTGGCTAATGGTTCATAAATTTGATTTTGGAGCCAAAGGAGCGGCTGTGTCTATCGGTA 753 Query 779 TCTCTTACTGGCTCAACGCGGTTTTTCTTTGGGTTTATATGAAACGCTCTAGTCGTTGTG 838 ||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||| Sbjct 754 TCTCTTACTGGCTCACCGCGGCTTTCCTTTGGGTTTATATGAAACGCTCTAGCCGTTGTG 813 Query 839 TCGAAACGCGGATTTATATGTCCAAGGATGTTTTTGTTCATACAAATATCTTCTTTCAAT 898 ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| Sbjct 814 CCGAAACGCGGATTTATATGTCGAAAGATGTGTTTGTTCATACAAATATCTTCTTTCAAT 873 Query 899 TTGCCATTCCTTCTGCAATGATGTGTTGCCTTGAGTGGTTAGCTTTCGAGGTCATTACTT 958 |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 874 TTGCGGTTCCTTCTGCAATGATGTGTTGCCTTGAGTGGTTAGCTTTCGAGGTGATTACTT 933 Query 959 TGCTGTCTGGTCTTCTACCCAACTCAAAGCTCGAAACATCGGTTATTTCGATTTGCCTCA 1018 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 934 TGCTGTCTGGTCTTCTACCCAACTCAAAGCTCGAAACTTCGGTTATTTCGATTTGCCTCA 993 Query 1019 CGACCTCTTCATTGCATTACAATCTAGTAAATGGAATTGGTGATGCAGCAAGCACCAATG 1078 | |||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||| Sbjct 994 CAACCTCTTCATTGCACTACAATCTGGTAAATGGAATCGGTGATGCAGCAAGTACCAATG 1053 Query 1079 TGGCTAATGAGCTAGGAGCTGGGAATCCGCGAGGGGCTCGTGATTCTGCTGCGGCTGCAA 1138 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1054 TGGCAAATGAGCTAGGAGCTGGGAATCCGCGAGGGGCGCGTGATTCTGCTGCGGCTGCAA 1113 Query 1139 TCATAATTGCAGCTGTTGAGTCAGTTATTGTGAGCTCTAGTCTGTTCTTGTCTCGCAGTG 1198 |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 1114 TCATAATTGCAGCTGTTGAGTCAGTTGTTGTGAGCTCTAGTCTCTTCTTGTCTCGCAGTG 1173 Query 1199 TGTGGCCTTATGCATATAGCAATGTGGAGGAAGTAATTAGTTATGTGACTGATATCACTC 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1174 TGTGGCCTTATGCATATAGCAATGTGGAGGAAGTAATTAGTTATGTGACTGATATCACTC 1233 Query 1259 CTATTCTTTGTATCTCAATCCTCATGGACAGCTTCTTGACCGTCCTCTCCGGGATTGTGA 1318 | ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct 1234 CCATTCTTTGTATCTCAATCCTCATGGACAGTTTCTTGACCGTCCTTTCCGGGGTTGTGA 1293 Query 1319 GAGGAACAGGGTGGCAAAAAATTGGAGCTTATGTGAACATAACCTCTTATTATGTCATTG 1378 ||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| |||||| Sbjct 1294 GAGGAACCGGGTGGCAGAAAATTGGAGCCTATGTAAACATAACCTCTTATTATCTCATTG 1353 Query 1379 GTATTCCTGTTGGACTTCTATTGTGTTTTCATCTTCACTTCAATGGGAAAGGACTTTGGG 1438 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1354 GTATTCCCGTTGGACTTCTATTGTGTTTTCATCTCCACTTCAATGGGAAAGGACTTTGGG 1413 Query 1439 CTGGTTTAGTCACAGGATCAACATTACAAACTCTAATCCTATTTCTTGTTATTGGATTTA 1498 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 1414 CTGGTTTAGTCACAGGATCAACACTACAAACTCTAATCCTCTTTCTTGTTATTGGATTTA 1473 Query 1499 CCAATTGGAGCAAAGAGGCAATTAAGGCTAGGGAGAGAATTGGTGATGAGAAAGTTTGGA 1558 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 1474 CCAATTGGAGGAAAGAGGCAATCAAGGCTAGGGAGAGAATAGGTGATGAGAAGGTTTGGA 1533 Query 1559 GACATGACTCATTGCTTAATTGAAGaaaaaaaGAAATACAAACTTTTGGGGGATTTTGAT 1618 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1534 GACATGACTCATTGCTTAATTGAAGAAAAAAAGAAATACAAACTTT-GGGGGATTTTGAT 1592 Query 1619 TGCTTCtttttttGTGTGTGTTTGTGCAATAACCTTCAGTTGATTGTAATTTATATTG 1676 ||||| ||| |||||| || || |||||| ||||| ||||||||||||||| |||||| Sbjct 1593 TGCTT-TTTGTTTGTGAGT-TT-GTGCAAGAACCTGCAGTTGATTGTAATTGATATTG 1647 > Ahg944975 jgi|Araly1|944975|scaffold_701204.1 Length=280 Score = 278 bits (150), Expect = 1e-73 Identities = 188/206 (91%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 541 TTGCTTCATCAAGATCCTCAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTGGTA 600 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 76 TTGCTTCATCAAGATCC-CAAATAGCAGAGTTAGCTGGTGTGTACTGTCTCTGGCTCGTA 134 Query 601 CCAGCTTTATTCGGTTACTCTGTTCTCGAGTCGTTGGTTCGATATTTTCAGTCACAAAGC 660 || |||||||||||||| | |||||| ||||| |||||||||||||||||||||||||| Sbjct 135 CCGGCTTTATTCGGTTAATTTGTTCTGGAGTCATTGGTTCGATATTTTCAGTCACAAAGT 194 Query 661 TT--GATTTATCCAATGGTCTTGAGCTCTCTAGCTGCTCTGTCTTTCCATGTTCCTCTCT 718 || ||| ||||||| |||||||||||||||| ||||||||||||||||||||||| | Sbjct 195 TTTTGATCTATCCAAGGGTCTTGAGCTCTCTATCTGCTCTGTCTTTCCATGTTCCTAAAT 254 Query 719 GTTGGCTAATGGTTCATAAATTTGAT 744 ||| |||||||||| ||||||||||| Sbjct 255 GTTAGCTAATGGTTGATAAATTTGAT 280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67991087325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5