BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G66840.1 Length=2094 Score E Sequences producing significant alignments: (Bits) Value Ahg908217 jgi|Araly1|908217|Al_scaffold_0002_1298 2582 0.0 > Ahg908217 jgi|Araly1|908217|Al_scaffold_0002_1298 Length=1854 Score = 2582 bits (1398), Expect = 0.0 Identities = 1712/1859 (92%), Gaps = 40/1859 (2%) Strand=Plus/Plus Query 129 ATGGGTGAAAGGAATTTAGATGGAACTGTATCAGTGAAAGCCACCATTAATAAGTACGGA 188 ||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||||||| Sbjct 1 ATGGGTGAAAGGACTTTAGGTGGAATTGTATCAGTGAAAGCCGCCATTAATAAGTACGGA 60 Query 189 CAAAAAGCTACAAGAAG---C------------G-T---C-A-T--TAA-GTCTTC---G 221 ||||||||||||||||| | | | | | | ||| |||||| | Sbjct 61 CAAAAAGCTACAAGAAGTGTCTCTCATCATCTTGATTTACCAGTCATAAAGTCTTCTTCG 120 Query 222 GTTGCTG-AGGATTTGCATAAGTCAGGTAGAGAACTTGGTATCTACAGAGAGAGTAGAAG 280 |||| || ||||||||||||||||||| || |||||||| |||||||| ||||||||||| Sbjct 121 GTTG-TGGAGGATTTGCATAAGTCAGGGAGGGAACTTGGAATCTACAGGGAGAGTAGAAG 179 Query 281 AGTTGCTGAGTCTGCTAAGGCCAAAGCAGAAGTGGAATTGTGTAAGGCGAAGAAGATAGT 340 ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 AGTAGCTGAGTCTGCAAAGGCGAAAGCAGAAGTGGAATTGTGTAAGGCGAAGAAGATAGT 239 Query 341 AAAGGAGCTTACTTTACGGATAGAGGAGTCGAATAGAAGGTTAAAGTCTCGGAGAATCGA 400 |||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| Sbjct 240 AAAGGAGCTTACTTTACGGATAGAGGAGTCGAATCGAAGGTTAAAGTCTCGAAAAATCGA 299 Query 401 TATTGAAGCTGTGATGAATGAGTCAAGGATAGATGGGAATGGTGGTTATGTTAGGATTAT 460 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 300 TATTGAAGCTGTGATGAATGAGTCAAGGATAGATGGGAATGGTGGGTATGCTAGGATTAT 359 Query 461 GAGAGAGTTAGAAGATATGAAGCAAGAATTGAGTAAGCTGAAGCTTGATGTAGTGTATGT 520 ||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 360 GAGAGAGTTGGAGGATTTGAAGCAAGAATTGAGTAAGCTGAAGCTTGATATAGTGTATGT 419 Query 521 TTCGAGAGAGAAAGTTGTGGCGGAGAAAGAAGTAATGGAGTTGGAGTCTAGAATGGAGGA 580 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 420 TTCGAGAGAGAAAGTTGTGGCGGAGAAAGAAGTAATGGAGTTGGGGTCTAGAATGGAGGA 479 Query 581 GAATTTGAAGTTGCTT-GAGAGTCTCAAGTTAGAAGTTGATGTTGCGAATGAAGAACATG 639 ||||||||||||| || |||||||| |||||||| |||||||||||||| |||||||||| Sbjct 480 GAATTTGAAGTTG-TTAGAGAGTCTTAAGTTAGAGGTTGATGTTGCGAACGAAGAACATG 538 Query 640 TATTGGTTGAAGTGGCGAAGATCGAGGCTTTGAAGGAGTGTAAAGAGGTTGAAGAGCAGA 699 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTTTGGTTGAATTGGCGAAGATCGAGGCTTTGAAGGAGTGTAAAGAGGTTGAAGAGCAGA 598 Query 700 GGGAGAAGGAAAGGAAGGAAGTGTCTGAGTCATTGCATAAACGAAAGAAAAGAATAAGGG 759 | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 599 GAGAGAGGGAAAGGAAGGAAGTGTTTGAGTCATTGCATAAACGAAAGAAAAGAATAAAGG 658 Query 760 AAATGATTAGAGAGATTGAGAGATCGAAGAACTTTGAGAATGAGTTAGCTGAGACTTTGT 819 |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| || | Sbjct 659 AAATGAAGAGAGAGATTGAGAGATCAAAGAACTTTGAGAATGAGTTATCTGAGACATTAT 718 Query 820 TAGATATTGAGATGTTAGAAACTCAGTTAAAGCTTGTCAAGGAAATGGAGAGGAAGGTTC 879 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TGGATATTGAGATGTTGGAAACTCAGTTAAAGCTTGTCAAGGAAATGGAGAGGAAGGTTC 778 Query 880 AGAGGAATGAGAGTATGTCGAGATCGAAAAACCGAGCTTTCGAAAGAGGGAAGGATAATT 939 |||| ||||| ||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 779 AGAGAAATGATAGTATGTCGAGATCGAAAAACCGAGCTTTTGAAAGAGGAAAAGATAATC 838 Query 940 TGTCGGTTTTGAAAGAAGTTACCGAAGCAACAGAAGCGAAGAAGGCAGAACTCGCTTCTA 999 ||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct 839 TGTCGGTATTGAAAGAAGTTATGGAAGCAACAGAAGCGAAGAAGGCGGAACTTGCTTCTA 898 Query 1000 TTAACGCGGAGTTATTTTGTCTAGTCAATACAATGGATACATTGAGGAAAGAATTTGACC 1059 ||||||| || | |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 899 TTAACGCAGAACTCTTTTGTCTAGTCAATACAATGGATACCTTGAGGAAAGAACTTGACC 958 Query 1060 ATGC-AAAGAAAGAAACAGCTTGGTTAGATAAGATGATACAAAAGGATGATGTAATGCTT 1118 | || ||| || ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 959 AAGCTAAACAA-GAAACAGCTTGGTTAGATAAGATGATACAAAAGGATGATGTAATGATT 1017 Query 1119 GAGAGACTCAATACGAAGCTGCTTATTGCGAAAGATCAATTAGAAGCAGTATCTAAAGCT 1178 |||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| Sbjct 1018 GAGAGACTCAATACGAAGCTGCTTATTGTGAAAGATCAATTAGCAGCAGTATCTGCAGCT 1077 Query 1179 GAAGAAAGAATCAGCTATCTTGCTGACAATTTAACTACTTCGTTTGAGAAACTAAAGAGT 1238 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1078 GAAGAAAGAATCAGCTGTCTTGCGGACAATTTAACTACTTCGTTTGAGAAACTAAAGAAC 1137 Query 1239 GATAGAGAAGCTGCAAAGAAAGAGGAGCTTAAGCTTAGAGAAGAAGCAAGGATCATCAAC 1298 |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| | Sbjct 1138 GATAGAGAAGCTGCGAAGAAAGAGGAGCTTAACCTTAAAGAAGAAGCAAGGATCATCGAT 1197 Query 1299 AATGAGATACAGAAAACCGAAACAGGATTTGATGGAAAGGAAAAAGAGTTGCTTTCCAAG 1358 || || |||||||| | ||||| ||| ||||||||||||||||||||||| ||||||||| Sbjct 1198 AAAGAAATACAGAATATCGAAATAGGTTTTGATGGAAAGGAAAAAGAGTTACTTTCCAAG 1257 Query 1359 TTAGATGAGCTTGAGAAAGCGAAGCACGCAGAGAG-TTTAGCTCT-AGAGAAGCTTGAAA 1416 |||||||||||| |||||||||||||| ||||| | ||||||||| | ||||||||||| Sbjct 1258 TTAGATGAGCTTAAGAAAGCGAAGCACACAGAG-GCTTTAGCTCTCA-AGAAGCTTGAAT 1315 Query 1417 CAATGGTAGAGAAAACAATGGAAACTCGAGAAATGGAATCTCGGCGTAATTCAACTATTA 1476 |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || | Sbjct 1316 CAATGGTAGAGAAAACAATGGAAACTCGGGAAATGGAATCTCGGCATAATTCAACCATCA 1375 Query 1477 CAATATCGAGATTTGAGTACGAGTATTTGAGTGGAAAAGCTTGTCATGCTGAAGAAACTG 1536 ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1376 CAATATCAAGATTCGAGTACGAGTATTTGAGTGGAAAAGCTTGTCACGCTGAAGAAACCG 1435 Query 1537 CAGAGAAGAAAGTGGAAGCAGCAATGGCGTGGGTCGAAGCACTAAAGGCTAGCACTAAGG 1596 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1436 CAGAGAAGAAAGTGGAAGCTGCAATGGCGTGGGTCGAAGCACTAAAGGCTAGCACTAAGG 1495 Query 1597 CGATTATGATAAAGACAGAATCTTTAAAGAGAGTGAGTGGGAAAACAATGTTGGAAGAAG 1656 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1496 CGATTATGATAAAGACAGAATCTTTAAAGAGGGTGAGTGGGAAAACAATGTTGGAAGAAG 1555 Query 1657 AGAGGGAATCGTTTAGGATGCAGAGGTCGCTATCGATAAAGAGATTGGTCCAAGATGAGA 1716 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1556 AGAGGGAATCGTTTAGGATGCAGAGGTCGCTATCGATAAAGAGATTGATCCAAGATGAGA 1615 Query 1717 TTCAGAAGTTCAAGGGAAATTCAGAAGACAATGGCTTGATCAACTCTCCTAAACCGGTGA 1776 || |||||||||||| ||| ||||||||||| | ||||| ||| |||||||||||||||| Sbjct 1616 TTGAGAAGTTCAAGGAAAACTCAGAAGACAAAGACTTGAACAATTCTCCTAAACCGGTGA 1675 Query 1777 GAAAATCGGTTAGGCTGAGCGGGAAATTTGCACCGGTTCAGGGAGGGAAGTCGAGAAGGT 1836 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1676 GAAAATCGGTTAGGCTGAGCGGGAAATTCACACCGGTTCAGGGAGGGAAGTCGAGAAGAT 1735 Query 1837 ACTCATC---AGGGAACCGAGCGACTCCAACATTCTTTGTAATCAAGAAGAAGAAGAAAG 1893 ||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||| Sbjct 1736 ACTCATCTGCAGGGAACAGAGCAACTCCAACTTTCTTTGTAATCAAGAAGAAGAAGAAAG 1795 Query 1894 TTCCAAACATGGTCAAATTTTTTAGCCGGAAGAGGCGTAATTCTTCTTTAGAACAATGA 1952 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1796 TTCCAAACATGGTCAAATTTTTTAGCCGGAAAAGGCGTAATTCCTCTTTAGAACAATGA 1854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78770626660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5