BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G66920.2
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925915 jgi|Araly1|925915|scaffold_201476.1 2704 0.0
Ahg908232 jgi|Araly1|908232|Al_scaffold_0002_1313 246 4e-64
Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324 230 4e-59
> Ahg925915 jgi|Araly1|925915|scaffold_201476.1
Length=1887
Score = 2704 bits (1464), Expect = 0.0
Identities = 1770/1911 (93%), Gaps = 47/1911 (2%)
Strand=Plus/Plus
Query 69 TTGTTCATAGATCAAACCGATCATGTACTATCTCCCCAGTTCTTGTT-TGGTCTTGTTCC 127
|||||||| ||||||||| ||||||||||||||||||| ||||| || |||| ||||||
Sbjct 1 TTGTTCATTGATCAAACCAATCATGTACTATCTCCCCACTTCTT-TTCTGGTTTTGTTCT 59
Query 128 TCTTCTTCTCTTTATTTTACCATCTTCCTTGTGCTTCAAGTAAACAAACACTTGGATGGT 187
|| ||||||| |||||| ||||| |||||||||||||||||||||||| |||||| ||||
Sbjct 60 TCCTCTTCTCCTTATTTCACCATATTCCTTGTGCTTCAAGTAAACAAAAACTTGGGTGGT 119
Query 188 GCGAATCTCAGTTTCAGTGTGGAAACATCACTGCCGGTTTTCCC-TTCTGGGGAGGGAAT 246
||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct 120 GCGAATCTCAGTTTCAGTGTGGAAACATCACCGCCGG-TTTCCCTTTCTGGGGAGGGAAT 178
Query 247 CGTCCCGAAGTTTGCGGTCATCCATTGCTGGAGCTTCACTGCCTTGATAACATCACCTCT 306
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 179 CGTCCCGAAGTTTGCGGTCATCCATTGCTGGAGCTTCGCTGCCTTGACAACATCACCTCT 238
Query 307 TTAACCATCTCAGACCATTTGTACCATGTTCTTAGTATAAATCATACATATAACACTCTA 366
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 239 TTAACCATCTCAGACCATTTGTACCACGTTCTTAGTATAAATCATACATATAACACTCTT 298
Query 367 AGAGTTGCCAGAACAGACTTTTTACAGTCCATTTGCCTCTCTCCATTCCCATTCGCCAAC 426
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 AGAATTGCCAGAACAGACTTTTTACAGTCCATTTGTCTCTCTCCATTCCCATTCGCCAAC 358
Query 427 GCGACTTTGCCACCAGAAATATTCGATATTTTGCCAACCTACAAGAGCGTCACACTCTAC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCGACTTTGCCACCAGAAATATTCGATATTTTGCCAACCTACAAGAGCGTCACACTCTAC 418
Query 487 CGTTGCTACCCTGTTATTCCTGACCTTGCAAGGTACGGATGTCCTGCGATAGGTTCGGTC 546
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 CGTTGCTACCCTGTTCTTCCTGACCTTGCAAGGTACGGATGTCCTGCGATAGGTTCTGTC 478
Query 547 TCAGTGTCTGACAACCTTGAAAATCCTGTTAGCTGCGAAGCCCGTTTCACCGTGAACATT 606
||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| ||
Sbjct 479 TCAGTGTCTGACAACCTTGAAAATCCTGTTAACTGCGAAGCACGTTTCGTTGTGAACGTT 538
Query 607 CCTACGAGTTTCGTTCCAAACGAGAAAAGGTTGAATATAA-CAAGTTTGGTAAGGGATGT 665
|| |||||||||||| |||| ||||||| ||||||||||| ||| ||||||||| |||||
Sbjct 539 CCCACGAGTTTCGTTACAAAGGAGAAAAAGTTGAATATAACCAA-TTTGGTAAGTGATGT 597
Query 666 AAGAAATGGATTTGAGGTGAGGTTGAGAATCGATGAAAATTCGTGTCAAGAATGTTCATC 725
|||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 598 AAGAAATGGATTTGAGGTGAAGTTGAAAATCGATGAGAATTCGTGTCAAGAATGTTCATC 657
Query 726 TTCTCATAAATATTGCGGCTTTACCGGAACCTTACCATTAGAAACTAAATGCCGGCCACT 785
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
Sbjct 658 CTCTCATAAATATTGCGGCTTCACCGGATCCTTACCATTAGAAACTAAATGCCGG---C- 713
Query 786 CAATCTACCAACTCGCTTGTCTTCTGAAGCGAAAATAGCTACAATAGCAGGTGTTTCTCT 845
| | || || | | | | | | || | | |||||||||||||||||| |||
Sbjct 714 C-A-CT-CC-A-T--C--GAC--C--AA-C-----T-CCTACAATAGCAGGTGTTTTTCT 753
Query 846 ACTTCCATTCTTGGTCTTAACATTGGTTGTCCATATTATCCG-AA-AG------CA-AAA 896
|||||||||||||||||||||||||||||||| ||| |||| || || | |||
Sbjct 754 TCTTCCATTCTTGGTCTTAACATTGGTTGTCCAAATTCTCCGAAAGAGAAAAAAGAGAAA 813
Query 897 AACTTCAAATGATAAGGGTCAACAAGACCTCAAGGAACATATTCCAAAACCAAGAATCAA 956
||||||| ||||| ||| ||||| || |||||| ||| ||||||| |||||||| ||||
Sbjct 814 AACTTCACATGATCTGGGCCAACACGAGCTCAAGAAACGTATTCCACAACCAAGACTCAA 873
Query 957 AGCACTTATTCAACTGAAGCAATATAGCTACGAACAAGTGAAGAGAATTACAAACTCATT 1016
||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 874 AGCACTTATTCCACTGAAGCAGTATAGCTACGAACAAGTGAAGAGAATGACAAACTCATT 933
Query 1017 CGCAGAAGTGGTGGGGCGAGGCGGATTCGGAATTGTCTATAGGGGAACCCTTTCTGATGG 1076
||| |||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 934 CGCGGAAGTGGTCGGGCGAGGCGGATTCGGAACTGTCTATAGAGGAACCCTTTCTGATGG 993
Query 1077 CCGTATGGTTGCAGTGAAGGTTTTGAAAGACTTAAAAGGTAATAATGGTGAAGACTTTAT 1136
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 994 CCGTATGGTTGCAGTGAAGGTCTTGAAAGACTTAAAGGGTAATAATGGTGAAGACTTCAT 1053
Query 1137 CAATGAAGTTGCAAGCATGAGCCAAACTTCACATGTCAACATTGTTACCCTCCTAGGATT 1196
|||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 1054 CAATGAAGTTGCAAGCATGAGCCAAACTTCTCATGTCAACATTGTTACCTTGTTAGGATT 1113
Query 1197 CTGCTCTGAAGGTTACAAGAGAGCAATTATTTACGAATTTATGGAAAACGGGTCTCTTGA 1256
|| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1114 TTGTTCCGAAGGTTATAAGAGAGCAATTATTTACGAATTTATGGAAAATGGGTCTCTTGA 1173
Query 1257 TAAGTTCATCTCAAGCAAGAAGTCATCAACTATGGACTGGAGGGAACTATATGGGATCGC 1316
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 1174 TAAGTTCATCTCAAGCAAGAAGTCAACAAATATGGACTGGATGGAACTATATGGGATCGC 1233
Query 1317 GTTAGGCGTTGCTCGTGGTCTAGAGTACTTACACCATGGTTGCAGAACAAGGATTGTACA 1376
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1234 ATTAGGCGTTGCTCGTGGTCTAGAGTACTTACACCATGGCTGCAGAACAAGAATTGTACA 1293
Query 1377 TTTCGACATAAAACCACAGAATGTACTCTTAGATGACAATCTTTCCCCGAAAGTATCAGA 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1294 TTTCGACATAAAACCACAGAATGTACTCTTAGATGACAATCTTTCCCCGAAAGTTTCAGA 1353
Query 1437 CTTTGGCCTTGCTAAGCTATGCGAGAGGAAAGAAAGTATCTTGTCACTAATGGACACAAG 1496
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1354 CTTTGGCCTTGCTAAGCTATGCGAGAGGAAAGAAAGTATCTTGTCACTACTGGACACAAG 1413
Query 1497 AGGAACGATAGGGTACATTGCACCTGAAGTGTTTTCGAGAGTGTACGGTAGCGTCTCCCA 1556
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1414 AGGAACGATAGGGTACATTGCACCTGAAGTGTTTTCAAGAGTGTACGGTAGAGTCTCCCA 1473
Query 1557 CAAGTCAGATGTGTATAGCTATGGAATGTTGGTTCTTGATATAATAGGAGCTAGGAACAA 1616
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1474 CAAGTCAGATGTGTATAGCTATGGAATGTTGATTCTCGATATAATAGGAGCTAGGAACAA 1533
Query 1617 AACATCAACCG-AGGACACTACATCTAGCACAAGCTCAATGTACTTTCCCGAATGGATAT 1675
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 AACATCAACCGAAGGA-ACTACATCTAGCACAAGCTCAATGTACTTTCCCGAATGGATAT 1592
Query 1676 ATAAGGATCTTGAGAAGGGAGACAATGGAAGGCTTATCGTGAATAGAA---G---CGAAG 1729
||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1593 ATAAGGATCTTGAGAAGGGAGACAATGGAAGGCTTATCGAGAATAGAATAAGTAGCGAAG 1652
Query 1730 AAGATGAGATAGCAAAGAAGATGACGTTGGTAGGTTTGTGGTGTATTCAGCCTTGGCCAT 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 AAGATGAGATAGCAAAGAAGATGACGTTGGTAGGTTTGTGGTGTATTCAGCCTTGGCCAT 1712
Query 1790 TAGATCGCCCGGCGATGAACAGAGTGGTAGAGATGATGGAAGGAAACCTGGATGCTCTTG 1849
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 CAGATCGCCCAGCGATGAACAGAGTGGTAGAGATGATGGAAGGAAACCTGGATGCTCTTG 1772
Query 1850 AAGTGCCTCCTAGGCCTGTTTTGCAATGCTCTGTAGTGCCTCATCTCGATTCTTCCTGGA 1909
||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 1773 AAGTGCCTCCTAGACCTGTTTTGGAATGTTCCGTAGTGCCTCATCTCGATTCTTCCTGGA 1832
Query 1910 TTTCAGAGGAAAATTCAATCTCCTCTGAGATATGATTTTCTCTGTAAACTG 1960
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1833 TTTCAGAGGAAAATTCAATCTCCTCTGAGATATGATTTTCTCCATAAACTG 1883
> Ahg908232 jgi|Araly1|908232|Al_scaffold_0002_1313
Length=879
Score = 246 bits (133), Expect = 4e-64
Identities = 228/273 (84%), Gaps = 9/273 (3%)
Strand=Plus/Plus
Query 119 TCTTGTTCCTCTTCTTCTCTTTATTTTACCATCTTCCTTGTGCTTCAAGTAAACAA-ACA 177
|||| |||| ||||||||| |||||| ||||| ||||| || ||||||||||||| | |
Sbjct 35 TCTTCTTCCCCTTCTTCTCCTTATTTCACCATTTTCCTCATGTTTCAAGTAAACAAGA-A 93
Query 178 CTTGGATGGTGCGAATCTCAGTTTCAGTGTGGAAACATCACTGCCGGTTTTCCCTTCTGG 237
||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 94 CTTGGTTGGTGTGAATCTCAGTTTCAGTGTGGAAACATCACCGCTGGTTTCCCCTTCTCC 153
Query 238 GGAGGGAATCGTCCCGAAGTTTGCGGTCATCCATTGCTGGAGCTTCACTGCCTTGATAAC 297
|| |||| ||||||| || ||||||||||||||| ||| |||||||||||| || | |||
Sbjct 154 GGTGGGATTCGTCCCCAAATTTGCGGTCATCCATCGCTAGAGCTTCACTGCTTTAACAAC 213
Query 298 -ATCACCTCTTTAACCATCTCAGACCAT-TTGTACCATGTTCTT-AGTATAAATCATACA 354
|| |||||| ||| ||||||||||||| || ||| ||||||| | |||| |||| |||
Sbjct 214 CAT-ACCTCTATAATCATCTCAGACCATCTT-TACAATGTTCTCCA-TATAGATCAAACA 270
Query 355 TATAACACTCTAAGAGTTGCCAGAACAGA-CTT 386
| ||||||||| ||| | || ||| |||| |||
Sbjct 271 TCTAACACTCTTAGACTCGCTAGAGCAGAGCTT 303
> Ahg908243 jgi|Araly1|908243|Al_scaffold_0002_1324
Length=1116
Score = 230 bits (124), Expect = 4e-59
Identities = 247/306 (81%), Gaps = 9/306 (3%)
Strand=Plus/Plus
Query 91 ATGTACTATCTCCC-CAGTTCTTGTTTGGTCTTGTTCCTCTTCTTCTCTTTATTTTACCA 149
|||||||||| ||| |||||||| || |||||||| || ||||||| ||||| |||||
Sbjct 1 ATGTACTATC-CCCTCAGTTCTTATTCAATCTTGTTCTTCCTCTTCTCCTTATTCTACCA 59
Query 150 TCTTCCTTGTGCTTCAAGTAAACAAACACTTGGATGGTGCGAATCTCAGTTTCAGTGTGG 209
||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||
Sbjct 60 TCTTCCTTGTGCTTCAAGTAAACAAGGACTTGGATGGTGTGAGTCTCTGTTTCAGTGTGG 119
Query 210 AAACATCACTGCCGGTTTTCCCTTCTGGGGAGGGAATCGTCCCGAAGTTTGCGGTCATCC 269
||||||||||| | ||| ||||| ||||| |||| ||||| | || ||||||||||||
Sbjct 120 GAACATCACTGCTGATTTCCCCTTTTGGGGCGGGAGTCGTCACAAACCTTGCGGTCATCC 179
Query 270 ATTGCTGGAGCTTCACTGC--CT-TGATAACATCACCTCTTTAACCATCTCAGACCATTT 326
||||| |||||||||||| | | | ||||||||||||||| ||||||| | ||
Sbjct 180 GTTGCTAGAGCTTCACTGCAACAATAACAACATCACCTCTTTATTCATCTCAAATCAAGA 239
Query 327 GTACCATGTTCTT-AGTATAAATCATACATATAACACTCTAA-GAGTTGCCAGAACAGAC 384
|| | |||||| | | ||||||| || | ||||| ||| | | |||| ||| |||||
Sbjct 240 GTTCTATGTTCGTCAAC-TAAATCAAACTTCTAACATTCTTACGC-TTGCTAGATCAGAC 297
Query 385 TTTTTA 390
|||||
Sbjct 298 CTTTTA 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77094655880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5