BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67070.1 Length=1750 Score E Sequences producing significant alignments: (Bits) Value Ahg908250 jgi|Araly1|908250|Al_scaffold_0002_1331 1969 0.0 > Ahg908250 jgi|Araly1|908250|Al_scaffold_0002_1331 Length=1329 Score = 1969 bits (1066), Expect = 0.0 Identities = 1239/1324 (94%), Gaps = 5/1324 (0%) Strand=Plus/Plus Query 190 ATGGGAGCAGACGCAATCCAAACGAATGGTCACGATCAAGCCAAGTTAACCGGCGGTGAA 249 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 1 ATGGGAGCAGACGCAATCCAAACGAACGGTCACGATCAAACCAAGTTAACCGGCGGTGAA 60 Query 250 GAGATCCAACGGCTGAGATGTTTTGTGAAGAACTACGAATGGGGCAAACTCGGACCGGAG 309 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 GAGATCCAACGGCTGAGATGTTTCGTGAAGAACTACGAATGGGGCAAACTCGGACCGGAC 120 Query 310 TCATTGGTGGCGAGACTCCAAGAGGCTAATACAGGACAACGAGTCGATTCGGAGATTCCT 369 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 TCATTGGTGGCGAGACTCCAAGAGGCTAATACAGGACAACGAGTCGACCCGGAGATTCCT 180 Query 370 TACGCTGAGTTTTGGATGGGTACTCATGAGTCTGGACCGAGTCATGTTGAATTCGGGTC- 428 |||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 181 CACGCCGAGTTTTGGATGGGGACTCATGAGTCAGGACCGAGTCATGTTGAATTTGGGTCG 240 Query 429 --GGGTCATGGTGTGTCTGATAAATGTATGGTTACATTGAAATCGTGGGTTTTGGATAAT 486 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 TTGGGTCATGGTGGGTCTGATAAGTGTATGGTTACATTGAAATCGTGGGTTTTGGATAAT 300 Query 487 CCGAATTTACTCGGGTCTAAAGTCGTGGACAAATGGGGTTGTGATCTTCCTTTCCTTTTC 546 ||| |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct 301 CCGGATTTACTCGGGTCTAAAGTCGTGGACAAGTGGGGTTGTGATCTTCCTTTTCTCTTC 360 Query 547 AAGGTTTTGTCAGTAACGAAAGCATTGTCGATTCAAGCACATCCAAATAAGGCCTTAGCA 606 ||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 361 AAGGTGTTGTCAGTGACAAAAGCATTGTCGATTCAAGCACATCCAAATAAGGCTTTAGCA 420 Query 607 GAGAAATTGCATAGAGAAGATCCTCTTCTTTACAGAGACAATAACCACAAGCCTGAGATT 666 ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct 421 GAGAAATTGCATAGAGAAGATCCTCTTCTCTATAGAGATAATAACCACAAGCCTGAGATT 480 Query 667 GCTCTTGCTGTTACTCCTTTTCAAGCCCTTTGTGGTTTCGTAACTCTTAAGGAACTGAAG 726 ||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| Sbjct 481 GCTCTTGCTGTTACTCCTTTTGAAGCCCTTTGTGGTTTCGTACCTCTCAAGGAACTGAAG 540 Query 727 GAGGTTATCACTAATGTACCAGAGATCACGGAGCTTGTAGGAAGCAAAGCTGCAGATCAA 786 ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 541 GAGGTTATCACCAATGTACCAGAGATCACAGAGCTTGTGGGAAGCAAAGCTGCAGATCAA 600 Query 787 ATCTTCAACGTCCACGAACACGATGAAGACGAGAGAATCAAATCCGTTGTTCGATTGATC 846 ||||||||||||||||||||||||||||| |||||| ||||||||||||| || |||||| Sbjct 601 ATCTTCAACGTCCACGAACACGATGAAGATGAGAGAGTCAAATCCGTTGTCCGGTTGATC 660 Query 847 TTCACACAGTTGATGTCTGCAAGTAACAATGAGACGAAGCAAGTGGTTTCTCGGATGAAG 906 ||||| ||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||| Sbjct 661 TTCACGCAGTTGATGTCCGCAAGCAACAATGAGACGAAGCAAGGGGTATCTCGGATGAAG 720 Query 907 AATCGTCTGCTCTTAGAGACCAAACACCGTGAACTGTCGGAGAAAGAGAAGTTGGTTTTG 966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AATCGTCTGCTCTTAGAGACCAAACACCGTGAACTGTCGGAGAAAGAGAAGTTGGTTTTG 780 Query 967 GAACTGGAGAAACAGTACACTGGTGACATAGGTGTCATCTCAGCCTTCTTCTTTAACTAT 1026 |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| Sbjct 781 GAACTGGAGAAACAGTACTCAGGTGACATAGGTGTGATCTCAGCCTTCTTCTTTAACTAC 840 Query 1027 GTCAAGCTTAATCCTGGAGAGGCTTTGTATTTGGACGCTAACGAGCCACACGCATATATA 1086 |||||||||||||||||||||||||||||||||||||| ||||||||||| || || || Sbjct 841 GTCAAGCTTAATCCTGGAGAGGCTTTGTATTTGGACGCAAACGAGCCACATGCTTACATC 900 Query 1087 TCCGGTGATTGTGTTGAGTGTATGGCGGCTTCAGACAACGTAGTTAGAGCTGGTCTTACT 1146 ||||| || ||| | |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 901 TCCGGCGACTGTATCGAGTGTATGGCGGCTTCAGACAACGTTGTTAGAGCTGGCCTTACT 960 Query 1147 CCTAAACATCGCGATGTTCAAACGCTTTGCTCTATGCTTACCTACAAATTGGGTTACCCG 1206 |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 961 CCTAAACACCGCGATGTTCAAACCCTTTGCTCTATGCTTACCTACAAATTGGGCTACCCG 1020 Query 1207 GAGATTCTGAAAGGATTTCCTCTGACTCCTTACGTTACAAGGTATCTTCCTCCATTTGAT 1266 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1021 GAGATTCTGAAAGGATTTCCTCTAACTCCTTACGTTACAAGGTATCTTCCTCCATTTGAT 1080 Query 1267 GAGTTTGAAGTGGATCATTGTGATCTTCCTAGAGGAAAATCGACGGTTTTTCCGGCAGTA 1326 ||||| |||||||| ||||| ||||| ||| | ||||| ||||||||||||||||||||| Sbjct 1081 GAGTTCGAAGTGGACCATTGCGATCTACCTGGTGGAAATTCGACGGTTTTTCCGGCAGTA 1140 Query 1327 CCAGGTCCTTCGGTTTATTTGGTTATTGAAGGAAAAGGGCAATTGCGAACCGGTTCATCT 1386 || || |||||||||||| ||||||||||||| ||||| |||||| ||||||||||||| Sbjct 1141 CCGGGGCCTTCGGTTTATCTGGTTATTGAAGGTCAAGGGAAATTGCAAACCGGTTCATCT 1200 Query 1387 AAAGTT-TTGGTAAACCGAGGAGATGTTTTGTTTGTTCCGGCTGATATTGAGATTCACGT 1445 || || ||||| |||||||||||||||||||||||||||||| ||| ||| ||||||| Sbjct 1201 CAA-TTGTTGGTGAACCGAGGAGATGTTTTGTTTGTTCCGGCTCATAACGAGGTTCACGT 1259 Query 1446 AACTGGAGAAAGTGATGTGATGAAGCTTTACAGAGCTGGAGTCAGCAGCAGATTCTTCCA 1505 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 AACCGGAGAAAGTGATATGATGAAGCTTTACAGAGCTGGAGTCAGCAGCAGATTCTTCCA 1319 Query 1506 AACA 1509 |||| Sbjct 1320 AACA 1323 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65667582380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5