BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67090.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1 1591 0.0
Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1 741 0.0
Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1 734 0.0
> Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1
Length=993
Score = 1591 bits (861), Expect = 0.0
Identities = 955/998 (96%), Gaps = 15/998 (2%)
Strand=Plus/Plus
Query 1 AACCTCACACATATCCACACTCAAAATCCAACGGTGTAGATCCTAGTCCACTTGAATCTC 60
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1 AACCTCACACATATCCACACTCAAAATCCAACGGTCTAGATCCTATTCCACTTGAATCTC 60
Query 61 ATGTATCCTAGACCCTCCGATCACTCCAAAGCTTGTTCTCATTGTTGTTATCATTATATA 120
||| |||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 61 ATGAATCCTAGACCCTCCGATCACTCCAAAGCTTATTCTCATTGTTATTACCATTATATA 120
Query 121 TAGATGACCAAAGCACTAGACCAAACCTCAGTCACACAAAGAGTAAAGAAGAACAATGGC 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAGATGACCAAAGCATTAGACCAAACCTCAGTCACACAAAGAGTAAAGAAGAACAATGGC 180
Query 181 TTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTCAGGCCACTATGGTCGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 TTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTCAGGCCACAATGGTCGC 240
Query 241 TCCTTTCAACGGACTTAAGTCCTCCGCTGCCTTCCCAGCCACCCGCAAGGCTAACAACGA 300
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TCCTTTCACCGGACTTAAGTCCTCCGCTGCCTTCCCAGCCACCCGCAAGGCCAACAACGA 300
Query 301 CATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATGCAGGTGTGGCCTCCGAT 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 301 CATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATGCAGGTATGGCCTCCCAT 360
Query 361 TGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTTACCGATTCCGAATTGGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTTACCGATTCCGAATTGGC 420
Query 421 TAAGGAAGTTGACTACCTTATCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTGGA 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTGGA 480
Query 481 GCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGACGGTACTG 540
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 481 GCACGGATTTGTGTACCGTGAGCACGGTAACACCCCCGGATACTATGATGGACGGTACTG 540
Query 541 GACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGCTCAAGTGTTGAAGGAAGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGCTCAAGTGTTGAAGGAAGT 600
Query 601 GGAAGAGTGCAAGAAGGAGTACCC-CAATGCCTTCATTAGGATCATCGGATTCGACAACA 659
| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 601 GCAAGAGTGCAAGAAGGAGTACCCTCAA-GCCTTCATTAGGATCATCGGATTCGACAACA 659
Query 660 CCCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACCAAGCTTCACCGGTTAAT 719
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCCGTCAAGTGCAGTGCATCAGTTTCATTGCCTACAAGCCACCAAGCTTCACCGGTTAAT 719
Query 720 TTCCCTTTGCTTTTGTGTAAACCTCAAAActttatcccccatctttgattttatcccttg 779
||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct 720 TTCCCTTTGCTTT-GTGTAAACATCAAAACATTATCCCCCACCTTTGATTTTATCCCTTG 778
Query 780 tttttctgctttttt-cttctt-tctt-----gggttttaatttccggacttaacgtttg 832
|| |||||||||||| |||||| | || ||||||||||||||||| ||||||||||
Sbjct 779 TTCTTCTGCTTTTTTTCTTCTTCTTTTTTTATGGGTTTTAATTTCCGGATTTAACGTTTG 838
Query 833 ttttccggtttGCGAGACATATTCTATCGGATTCTCAACTGTCTGATGAAATAAATATGT 892
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTTCCGGTTTGCGAGACATTTTCTATCGGATTCTCAACTGTCTGATGAAATAAATATGT 898
Query 893 AATGTTCTATAAGTCTTTCAATTTGATAT-GCATATCAACAAAAAGAAAATAGGACAATG 951
||||||||||||||||||| |||||| || |||||||||||||| |||| |||||||||
Sbjct 899 AATGTTCTATAAGTCTTTCGATTTGA-ATTGCATATCAACAAAATGAAAG-AGGACAATG 956
Query 952 CGGCTAC-AAATATGAAATTTACAAGTTTAAGAACCAT 988
||||| | |||||||||||||||||||| |||||||||
Sbjct 957 CGGCT-CGAAATATGAAATTTACAAGTTGAAGAACCAT 993
> Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1
Length=787
Score = 741 bits (401), Expect = 0.0
Identities = 514/568 (90%), Gaps = 9/568 (2%)
Strand=Plus/Plus
Query 166 AAGAAGAA-CAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224
|||||||| ||||||||||||||||||||| || || || ||||| |||| |||||||
Sbjct 82 AAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCGGCCGCTGTGGTTACCTCCCCGGCTC 141
Query 225 AGGCCACTATGGTCGCTCCTTTCAACGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283
| ||||| ||||||||||| |||| ||| ||| ||||| |||||||| ||||| | ||||
Sbjct 142 AAGCCACCATGGTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTGCTTTCCCGGTCACC 200
Query 284 CGCAAGGCTAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343
|||||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 201 CGCAAGGCCAACAACGACATTACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATG 260
Query 344 CAGGTGTGGCCTCCGATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403
|||||||||| || || ||||||||||||||||||||| | |||||||| |||||||||
Sbjct 261 AAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTTTATCTTACCTCCCTGACCTT 320
Query 404 ACCGA-TTCCGAATTGGCTAAGGAAGTTGACTACCTTATCCGCAACAAGTGGATTCCTTG 462
|| || | |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 321 ACTGACGT-CGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 379
Query 463 TGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATA 522
||||||||||||||| ||||||||||||||||||||||| ||||| ||| | ||||||||
Sbjct 380 TGTTGAATTCGAGTTAGAGCACGGATTTGTGTACCGTGAACACGGAAACACTCCCGGATA 439
Query 523 CTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGC 582
||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 440 CTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGC 499
Query 583 TCAAGTGTTGAAGGAAGTGGAAGAGTGCAAGAAGGAGTACCCCAATGCCTTCATTAGGAT 642
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 500 TCAAGTGTTGAAGGAAGTGCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGAT 559
Query 643 CATCGGATTCGACAACACCCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACC 702
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 560 CATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCC 619
Query 703 AAGCTTCACCG--G-TTAATTTCCCTTT 727
||||||||||| | |||||| ||||||
Sbjct 620 AAGCTTCACCGATGCTTAATT-CCCTTT 646
> Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1
Length=596
Score = 734 bits (397), Expect = 0.0
Identities = 508/561 (91%), Gaps = 9/561 (2%)
Strand=Plus/Plus
Query 176 ATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTCAGGCCACTATG 235
|||||||||||||||||||| || || || ||||| |||| || ||||| ||||| |||
Sbjct 18 ATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCAGCTCAAGCCACCATG 77
Query 236 GTCGCTCCTTTCAACGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACCCGCAAGGCTAA 294
|||||||| |||| ||| ||| ||||| |||||||| ||||| | |||||||||||||||
Sbjct 78 GTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTGCTTTCCCCGTCACCCGCAAGGCTAA 136
Query 295 CAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATGCAGGTGTGGCC 354
||||||||||||||| ||| ||||||| ||||||||||||| ||||||| ||||||||||
Sbjct 137 CAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCTGCATGAAGGTGTGGCC 196
Query 355 TCCGATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTTACCGA-TTCCG 413
|| |||||||||||||||||||||||||| |||||||| ||||||||||| || | ||
Sbjct 197 ACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTACTGACGT-CG 255
Query 414 AATTGGCTAAGGAAGTTGACTACCTTATCCGCAACAAGTGGATTCCTTGTGTTGAATTCG 473
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 256 AATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCG 315
Query 474 AGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGAC 533
|||| ||||| ||||||||||||||||||||||| ||| | ||||||||||| |||||||
Sbjct 316 AGTTAGAGCATGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGAC 375
Query 534 GGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGCTCAAGTGTTGA 593
||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 376 GGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGATTCTGCTCAAGTGTTGA 435
Query 594 AGGAAGTGGAAGAGTGCAAGAAGGAGTACCCCAATGCCTTCATTAGGATCATCGGATTCG 653
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 436 AGGAAGTGCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATCATCGGATTCG 495
Query 654 ACAACACCCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACCAAGCTTCACCG 713
|||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 496 ACAACAACCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCG 555
Query 714 --G-TTAATTTCCCTTTGCTT 731
| |||||| |||||| |||
Sbjct 556 ATGCTTAATT-CCCTTT-CTT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5