BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67300.2 Length=1793 Score E Sequences producing significant alignments: (Bits) Value Ahg475826 jgi|Araly1|475826|fgenesh2_kg.2__956__AT1G67300.1 2562 0.0 > Ahg475826 jgi|Araly1|475826|fgenesh2_kg.2__956__AT1G67300.1 Length=1776 Score = 2562 bits (1387), Expect = 0.0 Identities = 1525/1591 (96%), Gaps = 11/1591 (1%) Strand=Plus/Plus Query 135 TGAAATCAAGCGATCTAGAAGAATCTGGCAAAATCTTAGCTGACGAATGTTGGGATTGCA 194 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 158 TGAAATCAAGCGATCTAGAAGAATCTGGCAAAATCTTAGGTGACGAATGTTGGGACTGCA 217 Query 195 ACGAGAAACATCCTCGATGTATAAGAGAACGTCATCGAGAGATTATTCTCCGATGATCGA 254 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 218 ACGAGAAACATCCTCGATGTACAAGAGAACGTCATCGAGAGATTATTCTCCGATGGTCGA 277 Query 255 CGTCGAAGACAGCTCAGG---TCTTTTAGAGAATGATGTGGACAATGAAATGGAAACTAC 311 ||||||||| |||||||| ||||||||||||||| ||| | || |||||||| ||||| Sbjct 278 CGTCGAAGATAGCTCAGGTCTTCTTTTAGAGAATGAAGTGAATAAGGAAATGGAGACTAC 337 Query 312 AAATCCTTCATGGAAGTGTTCTCTTCCGCATGTTCTAGTGGCTACAATTTCGTCGTTTCT 371 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 338 AAATCCTTCATGGAAGTGTTCTCTTCCACATGTTCTAGTGGCTACGATTTCGTCGTTTCT 397 Query 372 ATTTGGTTACCATTTAGGAGTTGTTAATGAACCTCTTGAAAGCATTTCGTCTGATCTTGG 431 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 398 ATTCGGTTACCATTTAGGAGTTGTTAATGAACCACTTGAAAGCATTTCGTCTGATCTTGG 457 Query 432 TTTTAGTGGTGATACATTAGCTGAAGGTTTGGTGGTTAGTGTATGTCTTGGTGGTGCATT 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 458 TTTTAGTGGTGATACATTAGCTGAAGGTTTGGTGGTTAGTGTATGTCTTGGTGGCGCCTT 517 Query 492 TCTCGGATCTTTATTCAGTGGGGGAGTTGCTGATGGGTTTGGAAGACGGAGAGCTTTTCA 551 | ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 518 TATCGGATCTTTATTCAGTGGAGGAGTTGCTGATGGGTTTGGAAGGCGGAGAGCTTTTCA 577 Query 552 GATTTGTGCTTTGCCTATGATTTTGGGTGCTTTTGTGAGTGGAGTTAGCAACAGCTTAGC 611 | |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| Sbjct 578 GCTTTGTGCTTTGCCTATGATTTTGGGTGCTTTTGTCAGTGGACTTAGCAACAGTTTAGC 637 Query 612 TGTAATGCTTTTGGGAAGATTCTTGGTTGGGACTGGCATGGGTCTTGGACCACCTGTGGC 671 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 638 TGTCATGCTTTTGGGAAGATTCTTGGTTGGGACTGGCATGGGTCTTGGGCCACCTGTGGC 697 Query 672 AGCACTCTATGTGACAGAGGTATCACCAGCTTTTGTTAGGGGAACATATGGAAGCTTCAT 731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 698 AGCACTCTATGTGACAGAGGTATCACCAGCTTTTGTTAGGGGAACATATGGAAGCTTCAT 757 Query 732 ACAGATAGCTACATGTCTGGGACTGATGGCAGCTCTGTTTATAGGGATCCCAGTCCATAA 791 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 758 ACAGATAGCTACATGTCTGGGACTGATGGCAGCCCTGTTTATAGGGATCCCAGTCCATAA 817 Query 792 CATCACGGGTTGGTGGCGTGTCTGTTTCTGGCTTTCAACGATACCTGCTGCACTACTCGC 851 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 818 CATCACTGGTTGGTGGCGTGTGTGTTTCTGGCTATCAACGATACCTGCTGCACTACTCGC 877 Query 852 TCTGGGAATGTTCCTCTGTGCTGAGTCTCCACAGTGGCTATTCAAGCAAGGGAAGATAGC 911 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 878 TCTGGGAATGTTCCTATGTGCTGAGTCTCCACAGTGGCTATTCAAGCAAGGGAAGATAGC 937 Query 912 TGAAGCAGAAGCTGAGTTTGAGAGGCTGCTTGGAGGGTCTCATGTGAAAACAGCAATGGC 971 |||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 938 TGAAGCAGAAGCCGAGTTTGAGAGGCTGCTCGGAGAGTCTCATGTGAAAACAGCAATGGC 997 Query 972 AGAATTATACAAACTAGATCTAGACAAGACGGATGAACCAGATGTTGTGAGCCTCTCTGA 1031 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 998 AGAATTATACAAACTAGATCTAGACAAGACGGATGAACCAGATGTTGTGAGCCTCTCGGA 1057 Query 1032 GCTGTTATATGGTCGGCATTCAAGAGTTGTTTTTATTGGATCAACCCTGTTTGCTTTGCA 1091 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 ACTGTTATATGGTCGGCATTCAAGAGTTGTTTTTATTGGATCAACCCTGTTTGCTTTGCA 1117 Query 1092 ACAGCTATCTGGTATAAATGCTGTTTTTTATTTCTCTTCTACCGTATTCAAAAGTGCTGG 1151 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1118 ACAGCTATCTGGTATAAATGCTGTTTTTTATTTCTCTTCTACCGTTTTCAAAAGTGCCGG 1177 Query 1152 AGTACCATCGGACCTAGGCAACATATTTGTTGGAGTTTCAAACCTCTTGGGATCTGTAAT 1211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1178 AGTACCATCGGACCTAGGCAACATATTTGTTGGAGTTTCAAACCTCTTGGGATCTGTAAT 1237 Query 1212 CGCGATGGTGTTGATGGATAAAGTAGGAAGAAAGCTTCTTCTGCTTTGGAGTTTTATTGG 1271 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1238 CGCGATGGTGTTGATGGATAAAGTAGGAAGAAAGCTTCTTCTCCTTTGGAGTTTTATTGG 1297 Query 1272 CATGGTATGTTCAGCAATGGCACTTCAAGTTGGTGCTACAAGTTCATACTTACCACATTT 1331 ||||| | || |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1298 CATGGCA-GT--AGCAATGGCACTTCAAGTTGGTGCAACAAGTTCATACTTACCACATTT 1354 Query 1332 TTCGGCGTTGTGTTTGTCTGTCGGTGGCACTCTTGTGTTTGTGCTAACATTCGCCTTAGG 1391 ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1355 TTCGGCGTTGTGTTTATCTGTCGGTGGCACTCTCGCGTTTGTGCTAACATTCGCCTTAGG 1414 Query 1392 AGCTGGTCCAGTACCAGGTTTACTCCTCCCTGAGATCTTCCCAAGTCGAATCAGAGCAAA 1451 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1415 AGCTGGTCCAGTACCAGGTTTACTCCTCCCTGAAATCTTCCCAAGTCGAATTAGAGCAAA 1474 Query 1452 AGCGATGGCTTTCTGCATGTCTGTGCATTGGGTGATAAATTTCTTTGTGGGTTTACTCTT 1511 ||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1475 AGCTATGGCTTTTTGCATGTCGGTGCATTGGGTGATAAACTTCTTTGTGGGTTTACTCTT 1534 Query 1512 TCTGAGATTGCTTGAGAAGCTTGGTCCTCGGCTACTATATTCGATGTTTTCTACGTTCTG 1571 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1535 TCTGAGATTGCTTGAGCAGCTTGGTCCTCGGCTACTATATTCGATGTTTTCTACGTTCTG 1594 Query 1572 TTTAATGGCGGTGATGTTCGTGAAGCGGAACGTGATTGAAACCAAAGGAAAAACACTTCA 1631 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1595 TTTAATGGCGGTGATGTTCGTGAAGCGGAACGTGATTGAAACCAAAGGCAAAACACTTCA 1654 Query 1632 AGAGATTGAGATTTCTCTACTAGCCAAACCATGAATGTGTTTTCAGTCTCTC---AT--C 1686 |||||||||||| ||||||||||||||||||||||||||| |||| |||||| || | Sbjct 1655 AGAGATTGAGATCTCTCTACTAGCCAAACCATGAATGTGTATTCATTCTCTCTCTATGTC 1714 Query 1687 TTGTTGGTCACTGTTGTATAATCAAATAAAA 1717 |||| |||||||||||||||||||||||||| Sbjct 1715 TTGTCGGTCACTGTTGTATAATCAAATAAAA 1745 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67305462915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5