BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67328.1
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475830 jgi|Araly1|475830|fgenesh2_kg.2__960__AT1G67328.1 1869 0.0
> Ahg475830 jgi|Araly1|475830|fgenesh2_kg.2__960__AT1G67328.1
Length=1208
Score = 1869 bits (1012), Expect = 0.0
Identities = 1148/1213 (95%), Gaps = 11/1213 (1%)
Strand=Plus/Minus
Query 2 GAACTATGCGGTGCTCCAATTAAAAGAAGTATCGAAGAACGAATATTTGGCGCACTCTAG 61
||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1208 GAACTATGCGGTGTTCCAATTAAAAGAAGTAACGAAGAACGAATA-TTGGCGCACTCTAG 1150
Query 62 CAAAACCGGTCACCAGGCTGGTCGGTCATGTTAGCGGCGTTAGGTATCTCGAAGTGCCAG 121
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1149 CAAAACCGGTCACCAGGCTGGTCGGTCATGTTAGCAGCGTTAGGTATCTCGAAGTGCCAG 1090
Query 122 AGCCTACCTACGGAGTTGACCTTATACTTCTCACAAAGGAACTCATTGGCAAAAG-CGTT 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1089 AGCCTACCTGCGGAGTTGACCTTATACTTCTCACAAAGGAACTCATTGGCAAAAGTC-TT 1031
Query 181 CTCCACTTTGCGGTTAACGTCATGAAGGAAGACGTGAGTCGTGCCATCACCTTTCCGGTT 240
|||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1030 CTCCACATAGCGGTTAACGTCATGTAGGAAGACGTGTGTCGTGCCATCACCTTTCCGGTT 971
Query 241 ACGTGCCATGATGGCCGAGGAAAATATCGCCGCCATCCTTCCTGGCGCCTCTGGGAAGTA 300
||||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 970 ACGTGCCATGACGGCCGAGGAAAATATCGCCGCCATCCTTCCGGGCGCCACCGGGAAGTA 911
Query 301 CCCTTTTGGTGCGTCCACCATGATCAGATCCCACTCGGTATCATAGAACTCATCAGGGAG 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 910 CCCCTTTGGTGCGTCCACCATGATCAGATCCCACTCGGTATCATAGAACTCATCAGGAAG 851
Query 361 AGAAGTCAACGCCAAGGGACACTTTTCGTTGTAGCGGATCGGGAAAGCTTTAGCTGGTAA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CGAAGTCAACGCCAAGGGACACTTTTCGTTGTAGCGGATCGGGAAAGCTTTAGCTGGTAA 791
Query 421 ACACATGGGTTCGTTCTTGTAAGTCGAGAGAAGGCGGCCGGCCTCAGAAAGGTGGGTCCG 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 790 ACACATGGGTTCGTTCTTGTAAGTCGAGAGAAGGCGGCCGGCCTCCGAAAGGTGGGTCCG 731
Query 481 GTACTGAACATGGTGGGCCCTGAGGGATGGGGCGTCCTTGAGGACGGCCTCTATCCACTC 540
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 730 GTACTGAACATGGTGGGCCCTGAGGGATGGAGCATCCTTGAGGACGGCCTCTATCCACTC 671
Query 541 AGGATCCTCTTCCAAGAACACAGTTGTGCCACCTGGATTGAGGGAGGCCCACATGAGGGA 600
||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 670 AGGATCCTCCTCCAGGAACACAGTAGTGCCACCTGGATTGAGGGAGGCCCACATGAGGGA 611
Query 601 GTCGCGGCCGAGGCCAAAGACTAGAAAGTTACAAGGGAGACGCTCCTTGAGGACGTTTAA 660
|| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 610 ATCACGGCCTAGGCCAAAGACTAGGAAGTTACAAGGGAGACGTTCCTTGAGGACGTTTAA 551
Query 661 AGAGATCGAGATCTCCTCGAAAGATTGTTGAGGGACGGTGTGTGAAGTGGCGTAGTGGAC 720
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 550 AGAGATCGAGATCTCCTCGAAAGATTGTTGAGGGACGGTGTGTGAGGTGGCATAGTGAAC 491
Query 721 GATGGATTGGAGTTGGATTGGGGTGGCTGTGTATTTGGCTATAGACGCAGCTGTGTTCTT 780
||||||||| ||||| ||||||||||||| |||| |||||| |||||||| ||||||||
Sbjct 490 GATGGATTGTAGTTGAATTGGGGTGGCTGAATATTCGGCTATGGACGCAGCCGTGTTCTT 431
Query 781 AGCCGTGGAGCAGAGTGACAAGGTGTTGTCCGTAGCTCGGATGAAGCTTGTGATGAGCAT 840
||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 430 AGCTGTCGAGCATAGTGACAAAGTGTTGTCCGTAGCTCGGATGAAGCTTGTGATGAGCAT 371
Query 841 TGCGCCACCTATAAGACCAGCTAGAGCCA-CAGCGAGGAACCATGGCCGCTCTAGAAGCG 899
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 370 GGCGCCACCTAAAAGACCAGCTAGAGCCACCA-CGAGGAACCATGGCCGCTCTAGAAGGG 312
Query 900 TTTGCTTTGCACCTTTAGACTTGTCTTGAATCATGTTTGGTTTGCTTTTTG--GGGTTTG 957
||||||||||||||| |||||||||||||||||||||| |||| |||||| |||||||
Sbjct 311 CTTGCTTTGCACCTTTCGACTTGTCTTGAATCATGTTTGATTTG-TTTTTGTTGGGTTTG 253
Query 958 GCGAGAGAGGCTGATGAGTATATGGTTATACAAGGTGAAGAGATCGGATGAGAAAGTGGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GCGAGAGAGGCTGATGAGTATATGGTTATACAAGGTGAAGAGATCGGATGAGAAAGTGGA 193
Query 1018 GAAATAATGCTAATGGTAGAGTCAACGAATGTGAAGCACGTCCGTCTCAATCATTAATGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GAAATAATGCTAATGGTAGAGTCAACGAATGTGAAGCACGTCCGTCTCAATCATTAATGG 133
Query 1078 CACGTATGATTGATCGATCCTCGTTGTTCTTTTAATCTAATTTACTCACTTCTCTTAA-A 1136
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 132 CACGTATGATTGATCAATCCTCGTTGTTCTTTTAATCTAATTTACTCATTTCTCTTAAGA 73
Query 1137 TATAGATCTCAACTGATCAAATATAGTTTATTTCCATTTTAATGAAAAAAGTTTT-AAAA 1195
||| ||||||||||||||||| |||||||||| ||||||||||| ||| |||| ||||
Sbjct 72 -ATATATCTCAACTGATCAAATGTAGTTTATTTACATTTTAATGAGAAATTTTTTTAAAA 14
Query 1196 GGGTAATAGTAAA 1208
|||||||||||||
Sbjct 13 GGGTAATAGTAAA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45099410811
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5