BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67340.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925982 jgi|Araly1|925982|scaffold_201543.1 1788 0.0
> Ahg925982 jgi|Araly1|925982|scaffold_201543.1
Length=1170
Score = 1788 bits (968), Expect = 0.0
Identities = 1117/1186 (94%), Gaps = 21/1186 (2%)
Strand=Plus/Plus
Query 37 CTCAAAGACAAAGAAGAAGATTATGTTACCCTCAAGAAAAACTAAGAGAG-TCTTCTCCT 95
||||||||| | || |||||||||||||||||||||||||||||||||| || |||||
Sbjct 3 CTCAAAGAC--A-AACAAGATTATGTTACCCTCAAGAAAAACTAAGAGAGTTC-TCTCCG 58
Query 96 GTGACTTTACTCCGGGAAGAAAACGCCGACGATGTGTTGTTGTTCCTTCCTCTGTTTCTC 155
|||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 59 GTGACTTTACTCCGGGAAGAAAACGCCGACGA--TG-TGTTGTTCCTTCTTCTGTTTCTC 115
Query 156 CGGTACCGGAAAACACAACCGGAGCCGATTTGCTAGATTCAATTCCAGACGATCTTGTTA 215
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 116 CGGCGCCGGAACACACAACCGGAGCCGATTTGCTAGATTCAATTCCCGACGATCTTGTTG 175
Query 216 TCTCTATACTTTGTAAACTTGGCTCTACTTCTCGATGTCCTGCTGATTTCATCAACGTTT 275
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 176 TCTCTATACTTTGTAAACTTGGTTCTACTTCTCGATGTCCTGCTGATTTCATCAACGTTT 235
Query 276 TGCTGACATGTAAGAGATTAAAAGGATTAGCTATGAATCCTATTGTGTTGTCGAGATTAT 335
|| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct 236 TGATGACATGTAAGAGATTAAAAGGATTAGCTATGGATCCTCTTGTCTTGTCGAGATTAT 295
Query 336 CTCCTAAAGCTATCGCTGTTAAAGCTCATAATTGGTCGGAATATTCTCACCGGTTTTTAA 395
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 296 CTTCTAAAGCTATCGCTGTTAAAGCTCATAATTGGTCGGAATATTCTCACCGGTTCTTAA 355
Query 396 AAAGGTGTGTCGACGCCGGAAGTCTCGAAGCTTGTTACACTCTAGGAATGATTCGGTTTT 455
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 AACGGTGTGTCGACGCCGGAAGTCTTGAAGCTTGTTACACTCTAGGAATGATTCGGTTTT 415
Query 456 ATTGTTTACAAAACAGAGGAAACGGCGCGTCGTTAATGGCTAAAGCCGCGATTAGTTCTC 515
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 416 ATTGTTTACAAAACAGAGGAAACGGCGCGTCGTTGATGGCTAAAGCCGCGATTAGTTCTC 475
Query 516 ACGCGCCGGCGTTATATTCCT-TAGCAGTGATTCAGTTCAACGGAAGCGGTGGTTCAAAG 574
||||||||||||| |||| || |||| ||||||||||| |||||||||||||||||||||
Sbjct 476 ACGCGCCGGCGTTGTATT-CTCTAGCGGTGATTCAGTTTAACGGAAGCGGTGGTTCAAAG 534
Query 575 AATGATAAAGATCTTAGAGCCGGTGTGGCTTTATGCGCGCGTGCCGCTTTTCTTGGACAC 634
|| |||||||||||| |||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 535 AACGATAAAGATCTTCGAGCCGGTGTTGCTTTATGTGCGCGTGCGGCTTTTCTTGGTCAC 594
Query 635 GTCGACGCGCTACGTGAGCTAGGTCACTGTCTTCAAGATGGTTATGGAGTTCCTCAAAAC 694
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 595 GTAGACGCGCTTCGTGAGCTTGGTCACTGTCTTCAAGATGGTTATGGAGTTCCTCAAAAC 654
Query 695 GTCTCTGAAGGTAGGAGGTTT-TTAGTTCAAGCCAACGCTCGTGAACTCGCCGCCGTTTT 753
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 655 GTCTCTGAAGGTCGGAGGTTTCTT-GTTCAAGCCAACGCTCGTGAACTCGCCGCCGTTTT 713
Query 754 ATCTTCCGGTATACAAGCTAGGTCAACGTGGCTTTCTTTATCACAGCCACCACCTCCGGT 813
|||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |
Sbjct 714 ATCTTCCGGTATCCAAGCTAGTTCAACGTGGCTTTCTTTATCACAG---CCACCTCC-G- 768
Query 814 TGTTCCTAACCATGGTCAACAAACTTGTCCTTTGCTTAGTGATTTTGGATGTAATGTACC 873
||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||
Sbjct 769 -GTTCCTAACCATGGT---CAGTCTTGTCCTTTACTTAGCGATTTTGGATGTAATGTACC 824
Query 874 GGCACCGGAAACACATCCCGCGAATAGGTTTTTAGCGGATTGGTTCGCTGTTCGCGGCGG 933
|||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct 825 GGCACCGGAAACACATCCGGCGAATAGGTTTTTAGCGGATTGGTTTGCCGTACGCGGCGG 884
Query 934 AGATTGTCCCGGAGATGGGTTGAGATTGTGTTCACACGCTGGTTGTGGACGACCGGAGAC 993
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 885 AGATTGTCCCGGAGATGGGTTGAGATTATGTTCACACGCTGGATGTGGACGACCGGAGAC 944
Query 994 GAGGAAGCATGAGTTTAGGAGATGTTCGGTTTGTGGCGTTGTTAATTATTGTTCACGCGC 1053
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 945 GAGGAAGCATGAGTTTAGGAGATGTTCGGTTTGTGGTGTTGTGAATTATTGTTCACGCGC 1004
Query 1054 TTGTCAAGCTTTAGATTGGAAACTCCGGCATAAAATGGATTGTGCTCCGGTGCAACGGTG 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1005 TTGTCAAGCTTTAGATTGGAAACTCCGGCATAAAATGGATTGTGCTCCGGTGGAACGATG 1064
Query 1114 GCTAGAGGAAGGTGACGGTGGTGAAGGTAACGTTCAGATTGACGGAAATGGTAACGGTGA 1173
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GCTAGAGGAAGGTGACGGTGGAGAAGGTAACGTTCAGATTGACGGAAATGGTAACGGTGA 1124
Query 1174 TAATGTTTTGCTTCCAATGAGTTAACGGCAATGTAACGGCTGCTTT 1219
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TAATGTTTTGCTTCCAATGAGTTAACGGCAATGTAACGGCTGCTTT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5