BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67360.2 Length=1205 Score E Sequences producing significant alignments: (Bits) Value Ahg475836 jgi|Araly1|475836|fgenesh2_kg.2__966__AT1G67360.2 1489 0.0 > Ahg475836 jgi|Araly1|475836|fgenesh2_kg.2__966__AT1G67360.2 Length=1078 Score = 1489 bits (806), Expect = 0.0 Identities = 999/1087 (92%), Gaps = 34/1087 (3%) Strand=Plus/Plus Query 8 AAACGATTCtttttttAAT-ACCCCAC-ACACCCTCAGATCT-ATTATCAACCGTTGGAT 64 |||||||||||||||| || |||||| |||||||||||||| || | |||||||||||| Sbjct 1 AAACGATTCTTTTTTTGATGCCCCCACAACACCCTCAGATCTAATCA-CAACCGTTGGAT 59 Query 65 TACGTGGACAAGTCCAATGCCACTCGTATTTTTAACCATTCCTCACACTCCTCAACGTGA 124 ||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||| Sbjct 60 CGCGTCGACAAGTCCAATTCCACTCGTATTTTTAACCACTCCT--CACTCCTCAACGTGA 117 Query 125 TGTGAAGATACTTTGCTGTTTCATAACGTCATAAAGAACAGTGACAGGCGAAATTTCTCA 184 ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | Sbjct 118 TGTGAAGATACTTTGCTGTTTCACAACGTCATAAAGAACAGTGACAGGCGCGATTTCTTA 177 Query 185 AGAAAGCAAATCGGAAGAACTCACaaaaaaaaCTAAGATGGAGACAGAGAAGAAAAATAG 244 |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 178 AGAAAGCAAATC-GAAGAACTCAAAAAAAAAACTAAGATGGAAACAGAGAAGAAAAATAG 236 Query 245 CAAGGAGGTAGCGCTAAAACACCTAGCGTTCGTGAGAATTGCAACGATCCATATTCTGGC 304 ||||||||||| |||||||||||||| |||||||||||||||| ||||||| |||||||| Sbjct 237 CAAGGAGGTAGGGCTAAAACACCTAGGGTTCGTGAGAATTGCAGCGATCCAGATTCTGGC 296 Query 305 TTCCGTCTCAAATCTCTACGAATACGCTAAACAAAACTCCGGTCCTCTCAAATCCGCCGT 364 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 297 TTCCGTCTCAAATCTGTACGACTACGCTAAACAAAACTCCGGTCCTCTCAAATCCGCCGT 356 Query 365 GGAAAAGGTCGAAGGAGCCGTCACCACCGTCGTCACCCCTGTCTATCAGAAATTCAAAGA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GGAAAAGGTCGAAGGAGCCGTCACCACCGTCGTCACCCCTGTCTATCAGAAATTCAAAGA 416 Query 425 TGTTCCTGATTCTCTCCTGGTCTTTCTAGATCACAAGGTGGGTGAAGTTTCGTACAAGTT 484 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 417 TGTTCCAGATTCTCTCCTCGTCTTTCTAGATCACAAGGTGGGTGAAGTTTCGTATAAGTT 476 Query 485 TGATGAGCATGCTCCTCCAATGGCTAAGA-AAGTGGTGAATCAAGCACATGTATTGATCT 543 ||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||||| Sbjct 477 TGATGAGCATGCTCCTCCAATGGCTAA-ACAAGTGGTGAATCAAGCTCATGTGTTGATCT 535 Query 544 ACAAGGCGACAGAGAAAGCTCAAAGCTTTGTGAAAGAGGCTCGTACCGGTGGTCCCAAAG 603 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 ACAAGGCAACAGAGAAAGCTCAAAGCTTTGTGAAAGAGGCTCGTACCGGTGGTCCCAAAG 595 Query 604 CTGCGTTTAACTATGCTGCAACTGAGTACAAGTTTTTCGTTGTGACCAACTCGGTTAAAG 663 |||| |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 596 CTGCTTTTAGCTATGCTGCGACTGAGTACAAGTATTTCGTTGTGACCAACTCGGTTAAAG 655 Query 664 TCTGGGCTAAACTTAACCAGTATAAACCAATCCATGCAATGGGTGACAAAGCTTTGCCTG 723 |||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| | Sbjct 656 TCTGGGCTAAACTTGACCAGTACAAACCAATCCATGCAGTGGGTGACAAAGCTTTGCCCG 715 Query 724 TGGCTGCACACTTTTCCAGTCGGTACAACGATTTGGTGACTGATATGACTAATATGGGTT 783 ||||||||||||| || ||||||||||||||||||||||| ||||||||| | ||||||| Sbjct 716 TGGCTGCACACTTGTCTAGTCGGTACAACGATTTGGTGACGGATATGACTCAGATGGGTT 775 Query 784 ACTCTTTGGTTGGTTATCTTCCGTTGGTTCCTGTTGATGACATTGTTAAGGCTTATGA-A 842 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 776 ATTCTTTGGTTGGTTATCTTCCATTGGTTCCTGTTGATGACATTGTTAAGGCTTATGAGA 835 Query 843 AAGGAAGATGCAAGGA-GAAAGAAAGGAGGGGA-T-A-------CGGCT------G--G- 883 ||| |||||||| | | ||||||||||||| || | | ||||| | | Sbjct 836 AAG-AAGATGCA-GCACGAAAGAAAGGAGGAGAATCAGAAGAGACGGCTACTACTGATGG 893 Query 884 AAAGAAAGGAGAGACTACTGATGCGGCTGATGGTGA-TAAATCATCGTCTGATTCGGAGT 942 |||||||||||||||| ||||| | ||||||| || |||||| |||||||||| ||||| Sbjct 894 AAAGAAAGGAGAGACTGCTGATACTACTGATGG-GAATAAATCGTCGTCTGATTTGGAGT 952 Query 943 AGGATTGAGACATTTTGTGATTTGTTGCTGCTTTGGAAAGTTTGGTTTGTTGGGTTTTGG 1002 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || Sbjct 953 AGGATTGAGACATTTTGTGATTTGTTGTTGCTTTGGAAAGTTTGGCTTGTTGGGTTT-GG 1011 Query 1003 TTATGTGTGTAAATGATCTTAGGACCTCTCtttttttCTTCTATCACAGAACTTTGAACT 1062 |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 1012 TTATGTGTGTAAATGATCTTAGGAACTCTCCTTTTTTCTTCTATCACAAAACTTTGAACT 1071 Query 1063 AGTGTTT 1069 ||||||| Sbjct 1072 AGTGTTT 1078 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44985042060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5