BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67440.1 Length=1571 Score E Sequences producing significant alignments: (Bits) Value Ahg925994 jgi|Araly1|925994|scaffold_201555.1 2076 0.0 Ahg908296 jgi|Araly1|908296|Al_scaffold_0002_1377 470 2e-131 > Ahg925994 jgi|Araly1|925994|scaffold_201555.1 Length=1333 Score = 2076 bits (1124), Expect = 0.0 Identities = 1267/1337 (95%), Gaps = 5/1337 (0%) Strand=Plus/Plus Query 149 AACCCCAACCGAGCAAAAATATGCTCAGAGCGAAGCACATCGGTAAAAATTACTCCTCCT 208 |||||||||| || || |||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1 AACCCCAACCTAGTAAGAATATGCTCAGAGCGAAGCATATCGGTAAAAATTACTCTTCCT 60 Query 209 CCTTGTCACCAGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATTG 268 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 CCTTGTCACCGGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATCG 120 Query 269 GTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAATT 328 ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 GTACTGTTGCCACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAGTT 180 Query 329 CTGTGACGAGTGATGATGATAATGATTCTTCAAAGACTGGTGTTGAATTGCTTTGTGTGG 388 |||||| ||||| | |||| ||||||| || |||||||||||||| ||||||||||| | Sbjct 181 CTGTGAAGAGTG--G-TGATGATGATTCGTCTAAGACTGGTGTTGAGTTGCTTTGTGTAG 237 Query 389 TGAGAGCTGTGTTGAAGAAAATACGAAGGAGAGTTTTAGTTGGAGATAAGGTTCTTGTTG 448 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 238 TGAGAGCTGTGTTGAAGAAGATACGAAGGAGAGTTTTGGTTGGAGATAAGGTTCTTGTTG 297 Query 449 GATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTTTCATCGACGTTCGG 508 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 298 GATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTTTCATCGCCGCTCGG 357 Query 509 AGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTTGTTCTTTTCTCTTTGGATC 568 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 358 AGATTTTGGATCCACCGGTTGCGAACGTTGATCATTTGCTGGTTCTTTTCTCTTTGGATC 417 Query 569 AACCGAAACTTGAGCCGTTTACTCTTACTAGGTTCTTGGTGGAAGCTGAATCTACTCGTA 628 |||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 418 AACCGAAACTGGAGCTGTTCACTCTCACTAGGTTCTTGGTGGAAGCTGAATCTACTCGAA 477 Query 629 TTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGTGAAGAGGAATTGGAAACTT 688 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 478 TTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGCGAAGAGGAATTGGAATCTT 537 Query 689 GGAAGATAAGGTTGCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAG 748 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GGAAGATAAGATTGCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAG 597 Query 749 ATGGACTTGATGATATTGCGTTTGTTCTGAGAGA-TCAGACTTCTGTGATTGTTGGACCT 807 | |||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| Sbjct 598 ACGGACTTGATGCCATTGCGTTTGTTCTGCG-GAATCAGACTTCTGTGATTGTTGGACCT 656 Query 808 AGTGGTGTTGGAAAGTCGAGTTTAATCAACGTATTGAGGAGTAATCATGGTGGTGGTGTG 867 |||||||| ||||||||||| ||||||||| | ||||||||||| ||||||||||||||| Sbjct 657 AGTGGTGTAGGAAAGTCGAGCTTAATCAACATTTTGAGGAGTAACCATGGTGGTGGTGTG 716 Query 868 GTGGAAGATGAGAATTGGTTTGAGCCTATGTTAGGTAATAAGTGGTTTGATGATCAGCGA 927 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 GTGGAAGATGAGAATTGGTTTGAGCCTATGTTAGGTAATAAGTGGTTTGATGATCAGCGA 776 Query 928 GTAGGGGAAGTTTCGAGTAGAAGTGGTAGAGGTAAACATACAACACGAAATGTATCGCTA 987 ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 777 GTAGGGGAAGTGTCTAGTAGAAGTGGTCGAGGTAAACATACAACACGAAATGTATCGCTA 836 Query 988 CTGCCGGTTTCTGAAGGTGGTTACCTCGCTGATACTCCTGGCTTTAACCAGCCTAGTTTG 1047 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 837 CTGCCGATTTCTGAAGGTGGTTACCTCGCTGATACACCTGGCTTTAACCAGCCTAGTTTG 896 Query 1048 CTGAAAGTAACGAAGCATTCACTAGCTCACTGTTTTCCTGAGATACGGAACATGATTGAG 1107 ||||||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 897 CTGAAAGTAACAAAGCAATCACTTGCACACTGCTTTCCTGAGATACGGAACATGATTGAG 956 Query 1108 AGCGAAAAATGTGGATTCAGAGACTGCTTGCATATTGGGGAACCAGGATGTGTTGTGAAA 1167 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 957 GGCGAAAAATGTGGATTCAGAGATTGCTTGCATATTGGGGAACCAGGATGTGTTGTGAAA 1016 Query 1168 GGTGACTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAA 1227 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 GGTGATTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAA 1076 Query 1228 GAATTTCAGCTTAGGACTTTTGGAACCAAAAGGGAAGATGATGTTAGGTACAAGGTGGGA 1287 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1077 GAGTTTCAGCTTAGGACTTTTGGAACCAAAAAGGAAGATGATGTTAGGTACAAGGTGGGA 1136 Query 1288 GACATGGGTGTGAAACATGCTGAACCACGGTTAATGCCTAAGAAGCATAGGAGAGAGTCA 1347 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 1137 GACATGGGTGTGAAACATGCTGAACCGCGGCTAATGCCTAAGAAGCATAGGAGAGAGTCA 1196 Query 1348 AGGAAGAAAACGAAACAGACAATGATCAGTGAGCTGGATGAGTTCGAAGATGAAGACAGT 1407 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1197 AGGAAGAAAACTAAACAGACAATGATCAGTGAGCTTGATGAGTTCGAAGATGAAGACAGT 1256 Query 1408 GATTTGTACATAGAGAACGACCCAATCGTCCAAGCCATTGAGAATGAGAATAAAAGACAA 1467 || ||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct 1257 GACTTGGACATAGAGAACGACCCAATCATCCGAGCCATTGAGAATGAGAATAAATGACAA 1316 Query 1468 TGAGAGAACTCAAGTTT 1484 |||||||| ||| |||| Sbjct 1317 TGAGAGAAATCATGTTT 1333 > Ahg908296 jgi|Araly1|908296|Al_scaffold_0002_1377 Length=1401 Score = 470 bits (254), Expect = 2e-131 Identities = 503/618 (81%), Gaps = 38/618 (6%) Strand=Plus/Plus Query 258 TCAAGCTATTGGTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGA 317 |||||| || ||||| |||| || ||||||||| ||| ||||||||||||||||||||| Sbjct 237 TCAAGCCATCGGTACAATCGCCACCGCTCAAGCGGACTATATGCGCGTCATTGTTCAAGA 296 Query 318 TGTAGCTAATTCTGTGACGAGTGATGAT-GATAATGATTCTTCAAAGACTGGTGTTGAAT 376 |||| | | ||| ||||||| || || |||| | | |||| ||| ||||| | Sbjct 297 TGTA-C-----C--TGA-GAGTGATTATGGA-GATGA-TGAT--AAGATTGGCGTTGAGT 343 Query 377 TGCTTTGTGTGGTGAG--AGCTGTGTTGAAGAAAATACGAAGGAGAGTT-TTAGTTGGAG 433 |||||||||||||||| || | ||||||| || || | |||| ||| || ||||| | Sbjct 344 TGCTTTGTGTGGTGAGAAAG-T-TGTTGAACAAGATTGGTAGGACTGTTCTT-GTTGGTG 400 Query 434 ATAAGGTTCTTGTTGGATCTA-TTGATTGGGTTGATAGAAGAG-GAATGATTGA-GAATG 490 |||| ||||||| ||||| | |||||||| ||||| | |||| || || | | |||| Sbjct 401 ATAAAGTTCTTG-TGGATAAAGTTGATTGGATTGATCGGAGAGCTAA-GA-TCATCAATG 457 Query 491 TGTTTCATCGACGT-TCGGAGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTT 549 ||||| ||||| || |||||||||||||| ||||| |||||||| |||||||| || | | Sbjct 458 TGTTTGATCGA-GTCTCGGAGATTTTGGAGCCACCGGTTGCGAATGTTGATCACTTAC-T 515 Query 550 G-TTCTTTTCTCT-TTGGATCAACCGAA-ACTTGAGCCGTTTACTCTTACTAGGTTCTTG 606 | |||| |||||| || |||||||| || | |||| || ||||| ||||||||||||||| Sbjct 516 GATTCTCTTCTCTCTT-GATCAACCTAAGA-TTGATCCATTTACACTTACTAGGTTCTTG 573 Query 607 GTGGAAGCTGAATCTACTCGTATTCCATTAACACTTGCTTTGAATAAAACTGAACTCATT 666 |||||||||||||||| | | |||| | | ||| |||||||||| ||| ||||||| | Sbjct 574 GTGGAAGCTGAATCTATTGGAATTCGAGTCACAATTGCTTTGAACAAATGTGAACTCGTC 633 Query 667 AGTGAAGAGGAATTGGAAACTTGGAAGATAAGGTTGCGTGGATGGAACTATGAACCATTG 726 | | |||||||| ||||| |||||||| |||| |||||| | |||||||||||||||||| Sbjct 634 ACTCAAGAGGAAGTGGAATCTTGGAAGGTAAGATTGCGTAGTTGGAACTATGAACCATTG 693 Query 727 TTTTGTAGTGTGGGAACTAAAGAT-GGACTTGATGATATTGCGTTTGTTCTGAGAGATCA 785 ||||| ||||||||||| |||| | ||||||||||| ||||||||| ||| || |||| Sbjct 694 TTTTGCAGTGTGGGAACAAAAG-TCGGACTTGATGAGATTGCGTTTAACCTGCGAAATCA 752 Query 786 GACTTCTGTGATTGTTGGACCTAGTGGTGTTGGAAAGTCGAGTTTAATCAACGTATTGAG 845 |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 753 GACTTCTGTGGTTGTTGGACCTAGTGGTGTTGGAAAGTCGAGCTTAATCAATATATTGAG 812 Query 846 GAGTAA-TCATGGTGGTG 862 |||| | ||||||||| Sbjct 813 AAGTAGCT-ATGGTGGTG 829 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58849428525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5