BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67690.1 Length=2133 Score E Sequences producing significant alignments: (Bits) Value Ahg315784 jgi|Araly1|315784|fgenesh1_pm.C_scaffold_2000817 2433 0.0 > Ahg315784 jgi|Araly1|315784|fgenesh1_pm.C_scaffold_2000817 Length=2958 Score = 2433 bits (1317), Expect = 0.0 Identities = 1416/1464 (97%), Gaps = 6/1464 (0%) Strand=Plus/Plus Query 160 GGTCTTCCTGGTTGTGATACTGTTTGTGTGAACCTATCTGCGAAGGAGATTCTCGATTTA 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88 GGTCTTCCTGGTTGTGATACTGTTTGTGTGAACCTATCTGCGAAGGAGATTCTCGATTTA 147 Query 220 GCTGAAGAAATTATTCACAAGTCTACACGAGTTCATGATGCTGTTGCTTTGGTTTCTCTA 279 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148 GCTGACGAAATTATTCACAAGTCTACACGAGTTCATGATGCTGTTGCTTTGGTTTCTCTA 207 Query 280 GATAAGCTCTCTTATGAGAATGTTGTATTGCCGTTGGCTGAATTGGAAGCTAGACAACTC 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 208 GATAAGCTCTCTTATGAGAATGTTGTATTGCCGTTGGCTGAATTGGAAGCTAGACAACTC 267 Query 340 TCGCTTATACAATGTTGTGTGTTTCCTAAGATGTTATCGCCTCACGATAATGTTCGTAAA 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 TCGCTTATACAATGTTGTGTGTTTCCTAAGATGTTATCGCCTCACGATAATGTTCGTAAA 327 Query 400 GCTAGTACAGAAGCGGAGCAGAAAATCGACGCTCATATACTTTCCTGCAGAAAACGTGAA 459 |||||| | ||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 328 GCTAGTGCTGAAGCTGAGCAGAAAATCGACGCTCATATTCTCTCCTGCAGAAAACGTGAA 387 Query 460 GATGTTTACCGGATTATCAAAATTTATGCTGCAAAGGGAGAATCGATTTCTCCGGAAGCT 519 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 388 GATGTTTACCGGATTATCAAAATTTATGCTGCAAAGGGAGAATCGATTGCTCCTGAAGCT 447 Query 520 AAATGTTACCTACAGTGTCTGGTTAGAGACTTTGAGGACAATGGTCTGAACCTTACTGCA 579 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 AAATGCTACCTACAGTGTCTGGTTAGAGACTTTGAGGACAATGGTCTGAACCTTACTGCA 507 Query 580 ATAAAAAGAGAGGAAGTTGAGAGACTAA-AATATGAAATTGATGAGCTTAGCTTGCGATA 638 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 508 ATAAAAAGAGAGGAAGTTGAGAGACTAACAA-ATGAAATTGATGAGCTTAGCTTGCGATA 566 Query 639 CATTCAGAATTTAAATGAAGATAGTTCTTGTCTCTTTTTTACTGAGGATGAGCTTGCTGG 698 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 567 CATTCGGAATTTAAATGAAGATAGTTCTTGTCTCTTTTTTACTGAGGATGAGCTTGCTGG 626 Query 699 TTTGCCTCTAGAATTTCTTCAGAATTTAGAAAAAACTCAAAATAAAGAATTTAAGCTCAC 758 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 627 TTTGCCTCTAGAATTTCTTCAGAGTTTGGAAAAAACTCAAAATAAAGAATTTAAGCTCAC 686 Query 759 CTTGGAAAGTCGTCACGTCGCAGCTATTCTAGAGTTGTGCAAGATAGCCAAGACAAGGAA 818 ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 687 CTTGGGAAGTCGTAACGTCGCAGCTATTCTAGAGTTGTGTAAGATAGCCAAGACAAGGAA 746 Query 819 GACGGTGGCTATGGCATATGGAAAGAGATGTGGAGATACCAATATTCCTGTGTTACAAAG 878 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 747 GACGGTAGCTATGGCATATGGAAAGAGATGTGGAGATACCAATATTCCGGTGTTACAAAG 806 Query 879 ATTGGTTCAGTCACGCCATAGATTAGCAT-GCGTA-TGTGGTTATGCACACTTCGCAGAT 936 ||||||||| ||||||||||||||||| | |||| | ||||||| |||| ||||||||| Sbjct 807 ATTGGTTCATTCACGCCATAGATTAGC-TCGCGTCCT-TGGTTATTCACATTTCGCAGAT 864 Query 937 TATGCTCTTGATCGTAGGATGTCAAAGACATCAATGAGGGTGATCAGGTTCCTGGAGGAC 996 |||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 865 TATGCTCTTGATCGCAGAATGTCGAAGACATCAATGAGGGTGATTAGGTTCCTGGAGGAC 924 Query 997 ATTTCTTCCAGTTTAACTGACTTGGCTATTAGAGAGTTTTCCATTTTGGAAGACTTGAAG 1056 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 925 ATCTCTTCCAGTTTAACTGACTTGGCTATTAGAGAGTTTTCCATTTTGAAAGACTTGAAG 984 Query 1057 AGGAAAGAAGAAGGGGAGATTCCATTTGGCGTAGAAGATCTTTTATACTACATAAAGAGG 1116 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 985 AGGAAAGAAGAAGGGGAAATTCCATTTGGCGTAGAAGATCTTTTATATTACATAAAGAGG 1044 Query 1117 GTAGAGGAGTTGCAGTTTGATCTTGATTTTGGAGATATCCGGCAATATTTTCCTGTCAAC 1176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 GTAGAGGAGTTGCAGTTTGATCTTGATTTTGGAGATATCCGGCAATATTTTCCTGTCAGT 1104 Query 1177 TTGGTCCTTTCCGGGATCTTTAAAATATGTCAGGACCTTTTTGGAATAAAATTTGAGGAG 1236 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1105 TTGGTCCTTTCCGGGATATTTAAAATATGTCAGGACCTTTTTGGAATAAAAATTGAGGAG 1164 Query 1237 GTTACAGAAGTTGATGTCTGGTATCATGATATTCGAGCTTTTGCCGTCTTTGACTCAGGA 1296 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1165 GTTACAGAAGTTGATGTCTGGTATCATGATGTTCGAGCTTTTGCCGTCTTTGACTCCGGA 1224 Query 1297 TCTGGAAAGCTTTTGGGATATTTCTATCTTGACATGTTTACAAGGGAAGGAAAATGTAAT 1356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1225 TCTGGAAAGCTTTTGGGATATTTCTATCTTGACATGTTTACAAGGGAAGGAAAATGTAAT 1284 Query 1357 CACAGCTGTGTGGTGGCTCTTCAGAATAACGCACTGTTCTCCAATGGTGCATGTCAGATT 1416 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1285 CACAGCTGTGTGATGGCTCTTCAGAATAACGCACTGTTCTCCAATGGTGCATGTCAGATT 1344 Query 1417 CCTGTGGCGTTGCTTATTGCACAGTTTGCAAAGGATGGTAGTGGTGAAGCTGTGCCATTG 1476 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1345 CCTGTGGCGTTGCTTATTGCACAGTTTGCAAAGGATGGTAGTGGTGAATCTGTGCCATTG 1404 Query 1477 GGATTTTCTGACGTGGTTAATCTTTTTCATGAGTTTGGCCATGTGGTCCAACATATCTGC 1536 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1405 GGATTCTCTGAGGTGGTTAATCTTTTTCATGAGTTTGGCCATGTGGTCCAACATATCTGC 1464 Query 1537 AATCGTGCTTCATTTGCTAGATTCTCGGGCCTACGTGTTGACCCCGACTTTCGGGAGATT 1596 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1465 AATCGTGCTTCATTTGCTAGATTCTCAGGCCTACGTGTTGACCCTGACTTTCGGGAGATC 1524 Query 1597 CCTTCTCAGTTATTGGAAAACTGG 1620 |||||||||||||||||||||||| Sbjct 1525 CCTTCTCAGTTATTGGAAAACTGG 1548 Score = 795 bits (430), Expect = 0.0 Identities = 448/457 (98%), Gaps = 0/457 (0%) Strand=Plus/Plus Query 1666 GATATCACCAAGCCACTTGTGGATGAAGTCTGCAAAACACTCAAACGTTGGCGATATTCT 1725 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1552 GATATTACCAAGCCACTTGTGGATGAAGTCTGCAAAACACTCAAACGTTGGCGATATTCT 1611 Query 1726 TTCTCTGCACTAAAGTCGCTTCAGGAGATATTATACTGTCTATTTGATCAAATAATATAT 1785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1612 TTCTCTGCACTAAAGTCGCTTCAGGAGATATTATACTGTCTATTTGATCAAATAATATAT 1671 Query 1786 TCGGACGATGATGCTGACTTACTCCAGCTAATCAGGAGTCTTCATCCAAAGGTAATGATA 1845 ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1672 TCGGACGATGACGCTGACTTACTGCAGCTAATCAGGAGTCTTCACCCAAAGGTAATGATA 1731 Query 1846 GGGCTACCAGTGGTGGAAGGAACCAACCCTGCTTCATGTTTCCCACGTGCTGTAATTGGC 1905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1732 GGGCTACCAGTGGTGGAAGGAACCAACCCTGCTTCATGTTTCCCACGTGCTGTAATTGGC 1791 Query 1906 TCTGAAGCAACATGTTACAGTCGTTTATGGAGTGAGGTGTATGCTGCTGATATATTTGCT 1965 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1792 TCCGAAGCAACATGTTACAGTCGTTTATGGAGTGAGGTGTATGCTGCTGATATATTTGCC 1851 Query 1966 TCAAAATTTGGAGATGGGCATCCGAATCTATATGCCGGCTTGCAGTTCAGAGACAAAGTG 2025 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1852 TCAAAATTTGGGGATGGGCATCCGAATCTGTATGCCGGCTTGCAGTTCAGAGACAAAGTG 1911 Query 2026 TTGGCCCCAGGAGGAGGCAAAGAACCAATGGAACTTCTCACCAATTTTCTTGGAAGGGAA 2085 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1912 TTGGCCCCAGGAGGAGGCAAAGAACCAATGGAACTTCTCACCAATTTTCTTGGAAGGGAA 1971 Query 2086 CCATCAACACAAGCTTTCATCGCTAGCCGGACAAACT 2122 |||||||||||||||||||||| |||||||||||||| Sbjct 1972 CCATCAACACAAGCTTTCATCGATAGCCGGACAAACT 2008 Score = 167 bits (90), Expect = 3e-40 Identities = 90/90 (100%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1 ATGACGGAAAACGAAGGAAACGACAAGAAAATCGAAGGATCTAATCCTAAGAAGAAGCTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACGGAAAACGAAGGAAACGACAAGAAAATCGAAGGATCTAATCCTAAGAAGAAGCTC 60 Query 61 AACGTTGTAACCTTCACCGGAGCGGCGGGT 90 |||||||||||||||||||||||||||||| Sbjct 61 AACGTTGTAACCTTCACCGGAGCGGCGGGT 90 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80256146215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5