BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67740.1 Length=1087 Score E Sequences producing significant alignments: (Bits) Value Ahg475878 jgi|Araly1|475878|fgenesh2_kg.2__1008__AT1G67740.1 1314 0.0 > Ahg475878 jgi|Araly1|475878|fgenesh2_kg.2__1008__AT1G67740.1 Length=841 Score = 1314 bits (711), Expect = 0.0 Identities = 803/847 (95%), Gaps = 8/847 (1%) Strand=Plus/Plus Query 1 CTCCAACTCACTTCTCATTGGATAAGACAACTATCAAGAAGCCTTCAATTTCCATTGGTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1 CTCCAACTCACTTCTCATTGGATAAGACAACTATCAAGAAGCCTTCAATTTCAATTGGCC 60 Query 61 CTCCTCTCTCCTTCTATAATCCCAAAAACcatctcacaaactcatcaaacctctttctca 120 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 61 CTCCTCTCTCCTTCTATAATCCCAAAAACCATCTCACAAACTCCTCAAACCTC--TCT-- 116 Query 121 tctcatcttcaagccatctccgatcatcatcaGACAATGGCAGCAGCTATGGCAACAGCA 180 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 117 TCTCATCTTCAAGCCATCTCCG---ATCATCAGACAATGGCAGCAACTATGGCAACAGCA 173 Query 181 ACCAAGTGCATGTCTCTAAACCCATCTCCTCCTaaactccaaaaccaaaccaaatccaaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 174 ACCAAGTGCATGTCTCTAAACCCATCTCCTCCTAAACTCCAAAACCAAACCAAACCCAAA 233 Query 241 ccattcatctccctaccaaccccaccaaaaccaaacGTCTCTCTCGCCGTCACAAGCACC 300 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 234 CCATTCATCTCCCTACCAACCCCACCAAAACCTAACGTCTCTCTCGCCGTCTCAAGCACC 293 Query 301 GCCCTAGCCGGAGCCGTCTTCTCTTCCCTCAGCTACTCTGAGCCAGCTTTAGCCATCCAA 360 || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 294 GCTCTAGCCGGAGCCGTCTTCTCTTCTCTCAGCTACTCCGAGCCAGCTTTAGCCATCCAA 353 Query 361 CAGATCGCTCAGCTCGCTGCAGCAAACGCCAGTAGCGACAACCGTGGCTTAGCTCTTCTC 420 |||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||| Sbjct 354 CAGATCGCCCAGCTCGCCGCAGCAGACGCCGGTAGCGACAACCGTGGCTTAGCTCTTCTC 413 Query 421 CTTCCCATCGTCCCAGCCATTGCATGGGTCCTTTACAACATCCTCCAGCCAGCTATTAAC 480 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 CTTCCTATTATCCCAGCCATTGCATGGGTCCTTTACAACATCCTCCAGCCAGCTATTAAC 473 Query 481 CAGGTCAACAAGATGCGTGAGAGTAAAGGTATCGTTGTTGGTCTAGGTATTGGTGGTGGT 540 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 CAGGTCAACAATATGCGTGAGAGTAAAGGTATCGTTGTTGGTCTAGGTATTGGTGGTGGT 533 Query 541 CTTGCAGCGTCAGGGCTTTTGACTCCACCTCCGGAGGCTTATGCTGCGGCAGAAGCGGCG 600 ||||||||||||||||||||||||||||| || |||||||| || |||||||||||||| Sbjct 534 CTTGCAGCGTCAGGGCTTTTGACTCCACCACCAGAGGCTTACGCGGCGGCAGAAGCGGCA 593 Query 601 GCTGCTAGTTCAGACAGCAGAGGACAGTTGTTGTTGATTGTTGTGACACCGGCACTACTT 660 || ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 594 GCAGCTGGTTCAGACAGCAGAGGACAGCTGTTGTTGATTGTTGTGACACCTGCACTACTT 653 Query 661 TGGGTTCTGTACAATATCTTGCAGCCAGCTTTGAACCAAATCAACAAGATGAGGTCTGGG 720 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 654 TGGGTTCTGTACAATATATTGCAGCCAGCTTTGAACCAACTCAACAAGATGAGGTCTGGG 713 Query 721 GATTAAAATCTtatatatata-taatattattataAATCATCTTTGGGATTCAAATGTAA 779 || |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| Sbjct 714 GACTAAAATCTTATATATATAATTATATTATTATTAATCATCTTTGGGATTCAAATGTAA 773 Query 780 AATTAATCCTTTGTTTTATGGACAGTTTTATGTTTACATTTTTGGACTAATATCGTTTCT 839 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 774 AATTAATCCTTTGTTTTATGGACAGTTCTATGTTTAAATTTTTGGACTAATATCATTTCT 833 Query 840 CTTATCG 846 |||||| Sbjct 834 TTTATCG 840 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40486537854 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5